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Physical Sciences and Mathematics Commons

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Chemistry

Clemson University

Theses/Dissertations

2011

CHARMM

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Full-Text Articles in Physical Sciences and Mathematics

A Theoretical Investigation Examining Dna Conformational Changes And Their Effects On Glycosylase Function, Allyn Brice Aug 2011

A Theoretical Investigation Examining Dna Conformational Changes And Their Effects On Glycosylase Function, Allyn Brice

All Dissertations

Glycosylase enzymes initiate the process of base excision repair (BER) in order to prevent the irreversible modification of the genome. In the BER process a damaged DNA base is recognized, removed from the DNA sequence, and then the remaining abasic site is repaired. Glycosylase enzymes are responsible for the base recognition mechanism and catalysis of the base excision. One of the most studied glycosylase superfamilies is uracil DNA glycosylase (UDG). The UDG superfamily has demonstrated specificity for excising uracil, which is the deamination product of cytosine, from DNA sequences of prokaryotes and eukaryotes. Mismatch-specific uracil DNA glycosylase (MUG) is a …