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Full-Text Articles in Physical Sciences and Mathematics

Conformational Dynamics And Free Energy Studies Of Dna And Other Biomolecules, Paul B. Orndorff Mar 2023

Conformational Dynamics And Free Energy Studies Of Dna And Other Biomolecules, Paul B. Orndorff

USF Tampa Graduate Theses and Dissertations

This work uses molecular dynamics simulations and enhanced sampling methods to investigate both the qualitative and quantitative properties of biomolecular systems. Conformational dynamics are critical in the study of biomolecular systems. Application of computer simulations to study dynamics of biomolecular systems allows for motions to be readily investigated at a resolution not possible in experimental techniques. In this work, the dynamics of uracil damaged and undamaged DNA is studied via molecular dynamics simulations. Uracil results in DNA from either misincorporation in the replication process or through spontaneous deamination of cytosine, and its presence in DNA can lead to mutations in …


Enhancement Of Supercapacitor Energy Storage By Leakage Reduction And Electrode Modification, Tete Tevi Mar 2016

Enhancement Of Supercapacitor Energy Storage By Leakage Reduction And Electrode Modification, Tete Tevi

USF Tampa Graduate Theses and Dissertations

Supercapacitors have emerged in recent years as a promising energy storage technology. The main mechanism of energy storage is based on electrostatic separation of charges in a region at the electrode-electrolyte interface called double layer. Various electrode materials including carbon and conducting polymers have been used in supercapacitors. Also, supercapacitors offer high life cycle and high power density among electrochemical energy storage devices. Despite their interesting features, supercapacitors present some disadvantages that limit their competitivity with other storage devices in some applications. One of those drawbacks is high self-discharge or leakage. The leakage occurs when electrons cross the double layer …