Physical Sciences and Mathematics Commons^™

Determining Domain Similarity And Domain-Protein Similarity Using Functional Similarity Measurements Of Gene Ontology Terms, Lisa Michelle Guntly, Jennifer Leopold, Anne M. Maglia

Computer Science Faculty Research & Creative Works

Protein domains typically correspond to major functional sites of a protein. Therefore, determining similarity between domains can aid in the comparison of protein functions, and can provide a basis for grouping domains based on function. One strategy for comparing domain similarity and domain-protein similarity is to use similarity measurements of annotation terms from the Gene Ontology (GO). In this paper five methods are analyzed in terms of their usefulness for comparing domains, and comparing domains to proteins based on GO terms.

Land Cover Types Of The Las Vegas Wash, Nevada, Seth A. Shanahan, Dave Silverman, Art Ehrenberg

Publications (WR)

Vegetation type, extent, continuity, and structure are some of the most important factors that determine wildlife diversity and distribution. Other contributing factors that shape wildlife communities include disturbance, competition, climate, and water availability. Because vegetation communities in the southwestern U.S. gradate sharply along zones of soil moisture, wildlife are often restricted to specific vegetation types. Along the Las Vegas Wash (Wash), Nevada, more than 250 wildlife species have been documented to occur in distinct wetland, riparian, and upland vegetation types. Recent studies have investigated the diversity and distribution of amphibians, birds, fishes, mammals, and reptiles (Shanahan 2005, 2005a, Van Dooremolen …

Depleted Carbon Monoxide In Fragment C Of The Jupiter-Family Comet 73p/Schwassmann-Wachmann 3, M. Disanti, W. Anderson, G. Villanueva, B. Bonev, K. Magee-Sauer, E. Gibb, M. Mumma

Physics Faculty Works

Carbon monoxide emission was targeted in fragment C of the recently split Jupiter-family comet 73P/Schwassmann-Wachmann 3 during its 2006 apparition, using the Cryogenic Echelle Spectrograph (CSHELL) at the NASA IRTF on Mauna Kea, Hawaii. Simultaneous sounding with H2O near 4.65 μm revealed highly depleted CO, consistent with a mixing ratio of 0.5% ± 0.13%. Along with depleted CH3OH but nearly normal HCN, this may indicate that this comet formed in the inner giant planets' region or, alternatively, that it formed relatively late, after significant clearing of the protosolar nebula.

Agenda: The Future Of Federal Wetlands Regulation After Rapanos, University Of Colorado Boulder. Natural Resources Law Center

The Future of Federal Wetlands Regulation After Rapanos (May 10)

Hot-Topic Discussion held at Brownstein Hyatt Farber Schreck in Denver, Colorado on May 10, 2007 from 12:00 p.m. to 1:15 p.m.

Speaker: Mark Squillace, Director of the Natural Resources Law Center, University of Colorado School of Law.

Commentators: Wayne Forman and Michelle Kales, attorneys, Brownstein Hyatt Farber Schreck

"Rapanos v. United States, 547 U.S. 715 (2006), was a United States Supreme Court case challenging federal jurisdiction to regulate isolated wetlands under the Clean Water Act. It was the first major environmental case heard by the newly appointed Chief Justice, John Roberts and Associate Justice, Samuel Alito. The Supreme Court …

Slides: The Future Of Federal Wetlands Regulation, Mark Squillace

The Future of Federal Wetlands Regulation After Rapanos (May 10)

Presenter: Professor Mark Squillace, Director, Natural Resources Law Center, University of Colorado School of Law

35 slides

Ua66 2007 Student Awards Ceremony, Wku Ogden College Of Science & Engineering

WKU Archives Records

Program recognizing Ogden College students with brief list of activities for each student.

Spatial Variation In Sea Urchins, Fish Predators, And Bioerosion Rates On Coral Reefs Of Belize, Jocelyn Brown-Saracino, Paulette Peckol, H. Allen Curran, Martha L. Robbart

Biological Sciences: Faculty Publications

Although sea urchins are critical for controlling macroalgae on heavily fished coral reefs, high densities threaten reefs, as urchins are also prodigous bioeroders. This study examined urchin population characteristics, bioerosion rates, their fish predators (Labridae), and potential competitors (Scaridae) on unprotected reefs and a reef within a marine protected area (MPA) in the lagoonal regions off Belize. Urchin density (<1 >m-2) and bioerosion rates (∼0.2 kg CaCO3m-2year-1) were lowest and members of the Labridae were the highest (∼20 fish 200 m-3) within the MPA, while several unprotected reefs had higher (∼18-40 m-2) urchin densities, lower Labridae abundances (1-3 fish 200 …

The Evolution Of Zinjanthropus Boisei, Paul J. Constantino, Bernard A. Wood

Biological Sciences Faculty Research

Many people assume that OH 5, the type specimen of Paranthropus boisei, collected in 1959, was the first evidence of that taxon to be found, but OH 3, recovered in 1955, predated the discovery of OH 5 by four years. Thus, Paranthropus boisei recently celebrated the equivalent of its fiftieth birthday. This review marks that milestone by examining the way our understanding of this taxon has changed during its fifty, or so, year history.

Sedimentology Of Acid Saline Lakes In Southern Western Australia: Newly Described Processes And Products Of An Extreme Environment, Kathleen Counter Benison, Brenda Beitler Bowen, Francisca Oboh-Ikuenobe, Elliot A. Jagniecki, Deidre A. Laclair, Stacy L. Story, Melanie R. Mormile, Boyoung Hong

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Naturally acid saline systems with pH values between 1.7 and 4 are common on the Yilgarn Craton of southern Western Australia. a combination of physical and chemical processes here yield a previously undescribed type of modern sedimentary environment. Flooding, evapoconcentration, desiccation, and eolian transport at the surface, as well as influx of acid saline groundwaters, strongly influence these lakes. Halite, gypsum, kaolinite, and iron oxides precipitate from acid hypersaline lake waters. Shallow acid saline groundwaters affect the sediments of the lakes and associated mudflats, sandflats, channels, and dunes by precipitating early diagenetic halite, gypsum, iron oxides, clays, jarosite, and alunite. …

Management Of The Houtman Abrohlos System. A Draft Review 2007 - 2017, Department Of Fisheries (Western Australia) On Advice From The Abrolhos Islands Management Advisory Committee

Fisheries management papers

This review contains a brief description of the Abrolhos System and its special values. It also states the goal and principal objectives for management during the next ten years (2006-2016), along with updated strategies to achieve these objectives. The document succinctly outlines the direction for multiple use management of the Houtman Abrolhos Islands as determined by the Abrolhos Islands Management Advisory Committee (AIMAC). The Committee’s role is to advise the Minister for Fisheries on management of the Abrolhos Islands and the Abrolhos Islands Fish Habitat Protection Area.

Integrated Fisheries Management Allocation Report Western Rock Lobster Resource, Integrated Fisheries Allocation Advisory Committee

Fisheries management papers

This report, prepared by the Integrated Fisheries Allocation Advisory Committee (IFAAC), contains the committee’s advice and recommendations to the Minister for Fisheries on allocations for the western rock lobster resource. The setting of explicit allocations to sectors (Customary, recreational and commercial) is integral to Integrated Fisheries Management (IFM) in Western Australia.

Review: A Creationist Review And Preliminary Analysis Of The History, Geology, Climate, And Biology Of The Galápagos Islands, Timothy R. Brophy

Faculty Publications and Presentations

No abstract provided.

The Origin Of 2 Sexes Through Optimization Of Recombination Entropy Against Time And Energy, Bo Deng

Department of Mathematics: Faculty Publications

Sexual reproduction in nature requires two sexes, which raises the question why the reproductive scheme did not evolve to have three or more sexes. Here we construct a constrained optimization model based on the communication theory to analyze trade-offs among reproductive schemes with arbitrary number of sexes. More sexes on one hand lead to higher reproductive diversity, but on the other hand incur greater cost in time and energy for reproductive success. Our model shows that the two-sexes reproduction scheme maximizes the recombination entropy-to-cost ratio, and hence is the optimal solution to the problem.

Spatial And Temporal Expression Of Vegetation And Atmospheric Variability From Stable Carbon And Nitrogen Isotope Analysis Of Bat Guano In The Southern United States, Christopher M. Wurster, Donald A. Mcfarlane, Michael I. Bird

WM Keck Science Faculty Papers

Stable isotopes of faeces contain information related to the animals feeding ecology. The use of stable isotope values from subfossil faeces as a palaeoenvironmental indicator depends on how faithfully the animal records their local environment. Here we present insectivorous bat guano δ¹³C and δ¹⁵N values from a precipitation gradient across the southern United States and northern Mexico to compare with local vegetation and climate. We find δ¹³C values to be an excellent predictor of expected C₄/CAM vegetation, indicating that the bats are non-selective in their diet. Moreover, we find bat guano δ …

An Epidemiological Model Of Rift Valley Fever, Holly D. Gaff, David M. Hartley, Nicole P. Leahy

Biological Sciences Faculty Publications

We present and explore a novel mathematical model of the epidemiology of Rift Valley Fever (RVF). RVF is an Old World, mosquito-borne disease affecting both livestock and humans. The model is an ordinary differential equation model for two populations of mosquito species, those that can transmit vertically and those that cannot, and for one livestock population. We analyze the model to find the stability of the disease-free equlibrium and test which model parameters affect this stability most significantly. This model is the basis for future research into the predication of future outbreaks in the Old World and the assessment of …

Motion-Sensitive 3-D Optical Coherence Microscope Operating At 1300 Nm For The Visualization Of Early Frog Development, Barbara M. Hoeling, Stephanie S. Feldman, Daniel T. Strenge, Aaron Bernard, Emily R. Hogan, Daniel C. Petersen, Scott E. Fraser, Yun Kee, J. Michael Tyszka, Richard C. Haskell

All HMC Faculty Publications and Research

We present 3-dimensional volume-rendered in vivo images of developing embryos of the African clawed frog Xenopus laevis taken with our new en-face-scanning, focus-tracking OCM system at 1300 nm wavelength. Compared to our older instrument which operates at 850 nm, we measure a decrease in the attenuation coefficient by 33%, leading to a substantial improvement in depth penetration. Both instruments have motion-sensitivity capability. By evaluating the fast Fourier transform of the fringe signal, we can produce simultaneously images displaying the fringe amplitude of the backscattered light and images showing the random Brownian motion of the scatterers. We present time-lapse movies of …

Is A Basketball Free-Throw Sequence Nonrandom? A Group Exercise For Undergraduate Statistics Students, Stephen C. Adolph

All HMC Faculty Publications and Research

I describe a group exercise that I give to my undergraduate biostatistics class. The exercise involves analyzing a series of 200 consecutive basketball free-throw attempts to determine whether there is any evidence for sequential dependence in the probability of making a free-throw. The students are given the exercise before they have learned the appropriate statistical tests, so that they can come up with ideas on their own. Students spend a full class period working on the problem, with my guidance and hints. In the next class period, we discuss how each student group approached the problem. I then present several …

In Vivo Imaging Of Transport And Biocompatibility Of Single Silver Nanoparticles In Early Development Of Zebrafish Embryos, Kerry J. Lee, Prakash D. Nallathamby, Lauren M. Browning, Christopher J. Osgood, Xiao-Hong Nancy Xu

Chemistry & Biochemistry Faculty Publications

Real-time study of the transport and biocompatibility of nanomaterials in early embryonic development at single-nanoparticle resolution can offer new knowledge about the delivery and effects of nanomaterials in vivo, and provide new insights into molecular transport mechanisms in developing embryos. In this study, we directly characterized the transport of single silver nanoparticles into an in vivo model system (zebrafish embryos) and investigated their effects on early embryonic development at single-nanoparticle resolution in real time. We designed highly purified and stable (not aggregated and no photodecomposition) nanoparticles and developed single-nanoparticle optics and in vivo assays to enable the study. We …

Redox Potential Measurement In Aqueous Solutions And Biological Media, Mark M. Goldin, G. J. Blanchard, A. K. Evseev, V. A. Kolesnikov, Yu S. Goldfarb, A. G. Volkov, Mikhail M. Goldin

Faculty Publications and Presentations

No abstract provided.

Response Of Eelgrass Zostera Marina To Co2 Enrichment: Possible Impacts Of Climate Change And Potential For Remediation Of Coastal Habitats, Sherry L. Palacios, Richard C. Zimmerman

OES Faculty Publications

Projected increases in dissolved aqueous concentrations of carbon dioxide [CO_2(aq)] may have significant impacts on photosynthesis Of CO₂-limited organisms such as seagrasses. Short-term CO_2(aq) enrichment increases photosynthetic rates and reduces light requirements for growth and survival of individual eelgrass Zostera marina L. shoots growing in the laboratory under artificial light regimes for at least 45 d. This study examined the effects of long-term CO_2(aq) enrichment on the performance of eelgrass growing under natural light-replete (33% surface irradiance) and light-limited (5% surface irradiance) conditions for a period of 1 yr. Eelgrass shoots were grown at …