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- Salish Sea (18)
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Articles 1 - 30 of 40
Full-Text Articles in Physical Sciences and Mathematics
Life Cycle Progression Of Chlainomonas Sp.: A Field Study, Honu Pata, Robin Kodner, Ag Camara, Clare Hanneman, Maya Matsumoto, Dan Van Hees
Life Cycle Progression Of Chlainomonas Sp.: A Field Study, Honu Pata, Robin Kodner, Ag Camara, Clare Hanneman, Maya Matsumoto, Dan Van Hees
WWU Honors College Senior Projects
Every year, there are blooms of algae in snowy alpine environments during the summer snow melts. One environment in particular, the snow-on-lake habitat on Bagley Lake in Mt Baker, has been the subject of study by the Kodner lab for many years. In this habitat, we find the genus Chlainomonas which has bloomed in late spring and early summer annually. Our lab has proposed a life cycle for the genus (Matsumoto et al 2024), and there are many morphologically distinct cell stages found in field collected samples. This study has expanded our understanding the life cycle dynamics by examining the …
Vignette 12: The Blob, Nicholas Bond
Vignette 12: The Blob, Nicholas Bond
Institute Publications
A marine heat wave of unprecedented severity, areal extent and duration occurred in the Northeast Pacific Ocean during 2014-2016. This event, known as the “Blob,” had a wide variety of far- ranging effects on physical, chemical, and biological ocean properties. Because the Blob was such a massive perturbation, it represents an attractively large signal for inquiry in the Salish Sea. It represents a dress rehearsal for typical conditions in future decades due to global climate change.
Vignette 16: Vulnerability And Climate Change Adaptation, Northwest Indian Fisheries Commission, Jamestown S'Klallam Tribe
Vignette 16: Vulnerability And Climate Change Adaptation, Northwest Indian Fisheries Commission, Jamestown S'Klallam Tribe
Institute Publications
The 2013 Jamestown Climate Vulnerability Assessment and Adaptation Plan provides an assessment of vulnerabilities of tribal resources to the negative impacts of climate change. The plan also identifies adaptation measures that the tribe is working to complete. Sea level rise, ocean acidification and climate models show potential for increased risks to critical habitats, tribal infrastructure and tribal health. As one of the first tribes in western Washington to complete a climate adaptation plan and vulnerability assessment, the Jamestown S’Klallam Tribe has identified and prioritized areas where changing climate conditions will leave tribal resources, infrastructure, economy and health most vulnerable, Climate …
Vignette 23: Indigenous Management Systems Can Promote More Sustainable Salmon Fisheries In The Salish Sea, William I. Atlas, Natalie C. Ban, Jonathan W. Moore, Adrian M. Tuohy, Spencer Greening, Andrea J. Reid, Nicole Morven, Elroy White, William G. Housty, Jess A. Housty, Christina N. Service, Larry Greba, Sam Harrison, Katherine Ir Butts, Elissa Sweeney-Bergen, Donna Macintyre, Matthew R. Sloat, Katrina Connors
Vignette 23: Indigenous Management Systems Can Promote More Sustainable Salmon Fisheries In The Salish Sea, William I. Atlas, Natalie C. Ban, Jonathan W. Moore, Adrian M. Tuohy, Spencer Greening, Andrea J. Reid, Nicole Morven, Elroy White, William G. Housty, Jess A. Housty, Christina N. Service, Larry Greba, Sam Harrison, Katherine Ir Butts, Elissa Sweeney-Bergen, Donna Macintyre, Matthew R. Sloat, Katrina Connors
Institute Publications
Indigenous peoples of the Northern Pacific Rim have harvested salmon for more than 10,000 years, and Pacific salmon (Oncorhynchus spp.) form the foundation of social-ecological systems encompassing communities from California to Kamchatka and Northern Japan. Through continuous placed-based interdependence with salmon, Indigenous societies formed deliberate and well-honed systems of salmon management. These systems promoted the sustained productivity of salmon fisheries. In Canada and the United States, Indigenous sovereignty and resource stewardship were forcibly disrupted by colonial government authority. Despite the destructive impacts of colonization, Indigenous culture and knowledge are resurgent in Canada and the United States. Indigenous fishing technologies and …
Vignette 01: The Salish Sea Estuary System, Bert Webber
Vignette 01: The Salish Sea Estuary System, Bert Webber
Institute Publications
The Salish Sea is an estuarine ecosystem. Freshwater from land drainages mixes with the waters of the Pacific Ocean and results in water with a measurable, although sometimes small amount of freshwater. The Salish Sea is among the preeminent estuaries of North America. Estuarine circulation and flow are central to the high biological productivity in the Salish Sea.
Vignette 02: Lower Trophic Levels In The Salish Sea, Ian Perry
Vignette 02: Lower Trophic Levels In The Salish Sea, Ian Perry
Institute Publications
Plankton form the base of the pelagic marine food web in the Salish Sea, and are eaten by fishes, marine mammals, and seabirds. Plankton include microscopic plants (phytoplankton) and very small animals (zooplankton). This vignette presents an overview of monitoring observations of phytoplankton and zooplankton distribution and biomass in the Strait of Georgia. Climate change may lead to unusual and unexpected patterns of phytoplankton and zooplankton in the future.
Vignette 03: Birds Of The Salish Sea, Rob Butler
Vignette 03: Birds Of The Salish Sea, Rob Butler
Institute Publications
The significance of the Salish Sea comes into focus when we look at the diversity and abundance of its birds and mammals, some of which are globally, continentally, and nationally important. Of particular importance is the diversity and abundance of species on the Fraser River Delta. There are more species of birds on the delta than any comparable area in Canada, and nearly half of all 550 species of birds reported for British Columbia have been seen on the delta. Despite all that has been learned about marine birds and mammals, large areas of the Salish Sea in Canada have …
Vignette 06: Living Shorelines In Puget Sound, Jason Toft
Vignette 06: Living Shorelines In Puget Sound, Jason Toft
Institute Publications
Nearly one third of Puget Sound’s shorelines are armored (e.g., seawall, bulkhead, riprap). Armoring has documented negative impacts on the flora and fauna that benefit from healthy intertidal beaches. Although shoreline armor may be necessary in some cases to protect people and property, there are often promising “living shoreline” options to restore natural features, also referred to as soft or green shorelines. These options can be applied to situations where complete restoration is either impractical or not feasible given human constraints. Living shoreline techniques often include a mix of design options, including armor removal, sediment nourishment of beaches, log placement, …
Vignette 07: Stormwater Effluent Exerts A Key Pressure On The Salish Sea, Emily Howe
Vignette 07: Stormwater Effluent Exerts A Key Pressure On The Salish Sea, Emily Howe
Institute Publications
One of the primary terrestrial pressures on the Salish Sea estuarine and marine environment is urban stormwater runoff. When rainfall runs across hard, impervious surfaces, rather than soaking into the soil, it picks up and delivers toxic contaminants directly to nearby streams, rivers, and eventually the Salish Sea. In fact, for most toxic substances, surface runoff is the largest contributing source of loading to Puget Sound. Unfortunately, the Salish Sea’s relationship with stormwater effluent is no outlier; stormwater is the fastest growing cause of surface water impairment in the United States as urbanization transitions forested and other natural landscapes to …
Vignette 09: Derelict Fishing Gear, Jason Morgan
Vignette 09: Derelict Fishing Gear, Jason Morgan
Institute Publications
Derelict fishing gear—nets, pots, and other gear lost during fishing operations or vessel transit—has been implicated in several aspects of degradation in the Salish Sea. Derelict gear can degrade marine habitats by scouring or preventing habitat access through accumulation of gear or by fundamentally altering habitats by trapping fine sediments and changing the substrate. Derelict gear has also been implicated in the deaths of countless fish, marine mammals, seabirds, and invertebrates in the Salish Sea. The issue of derelict fishing gear affects all reaches of the Salish Sea, albeit on different scales, and the Northwest Straits Initiative has provided its …
Vignette 17: Salish Sea Jellyfish, Correigh Greene
Vignette 17: Salish Sea Jellyfish, Correigh Greene
Institute Publications
The Salish Sea is home to a diverse community of gelatinous zooplankton (or "jellies"). In their adult forms, jellies comprise a relatively large proportion of biomass in the Salish Sea. Questions regarding jellyfish abundance and climate variation in the Salish Sea have been difficult to address, in part because of a lack of consistent monitoring. Research presented in this vignette suggests that jellyfish are sensitive to climate signals like marine water temperatures, but do not appear to be systematically increasing in abundance over time. Due to advances in modeling, we may gain a better perspective on the roles jellies play …
Vignette 18: Bellingham Bay, Legacy Contamination Under Repair, Olivia Klein
Vignette 18: Bellingham Bay, Legacy Contamination Under Repair, Olivia Klein
Institute Publications
Bellingham Bay, home to twelve designated hazardous waste cleanup sites, illustrates the harm of past practices as well as the effectiveness of cleanup efforts. Since 2000, the Bellingham Bay cleanup has focused on the removal of contaminated sediment and soils introduced from a wide variety of sources, including construction and other industrial and municipal activities. Bellingham Bay cleanup is managed by the Washington State Department of Ecology (under the authority of Washington State’s Model Toxic Control Act) in coordination with a multi- agency Bellingham Bay Action Team.
Vignette 20: Fraser River Estuary In Need Of Urgent Intensive Care, Laura Kehoe, Tara G. Martin
Vignette 20: Fraser River Estuary In Need Of Urgent Intensive Care, Laura Kehoe, Tara G. Martin
Institute Publications
The Fraser River is the lifeline of the Salish Sea, influencing its stratification, circulation, and primary productivity. If we do not take strong action to conserve the Fraser River estuary, two-thirds of the species at risk in this region are predicted to have a less than 50% chance of survival. Many of the region's most iconic species could disappear. Conservation action combined with environmental governance is a pathway for a brighter future for the Fraser River and other highly contested regions.
Vignette 21: How Ecological Time-Series Inform Response To Stressors, Jackson W.F. Chu
Vignette 21: How Ecological Time-Series Inform Response To Stressors, Jackson W.F. Chu
Institute Publications
An important part of biodiversity monitoring includes assessing the differences in vulnerability across parts of an ecosystem. Hypoxia is one of the big three climate- related stressors causing biodiversity loss in the oceans. As the ocean warms, its capacity to hold oxygen becomes reduced. At the same time, concurrent shifts in circulation result in changes to how oxygen gets transported from the surface (where oxygen dissolves into the ocean) to the seafloor and from offshore to inshore areas. When a habitat experiences a substantial drop in oxygen, below the point needed to sustain everyday life, animals respond by migrating away, …
Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody
Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody
Institute Publications
Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …
Vignette 19: Invasive European Green Crab, Jeff Adams, Emily Grason, P. Sean Mcdonald, Allen Pleus, Jude Apple, Roger Fuller, Lucas Hart, Alexandra Simpson
Vignette 19: Invasive European Green Crab, Jeff Adams, Emily Grason, P. Sean Mcdonald, Allen Pleus, Jude Apple, Roger Fuller, Lucas Hart, Alexandra Simpson
Institute Publications
European green crab pose documented threats to cultured and wild shellfish, eelgrass, and shoreline habitats and ecosystems. Because they can prey on juvenile crabs and shellfish, dense populations of EGC in the Salish Sea region could put fisheries and aquaculture resources in peril. After Fisheries and Oceans Canada researchers reported an established EGC population in Sooke Basin, BC in 2012, the Washington Department of Fish and Wildlife (WDFW) worked with Washington Sea Grant (WSG) to secure Puget Sound Marine and Nearshore Grant Program funding and establish a volunteer-based early detection and monitoring program. WSG launched Crab Team in 2015 with …
Vignette 14: Eelgrass Wasting Disease, Olivia Graham, Morgan Eisenlord, Drew Harvell
Vignette 14: Eelgrass Wasting Disease, Olivia Graham, Morgan Eisenlord, Drew Harvell
Institute Publications
Rising seawater temperatures can increase the risk of disease outbreaks in many taxa. Pathogens are potentially the ultimate keystone species in that their small biomass can have massive impacts that ripple through ecosystems. Disease outbreaks can be particularly damaging when they affect ecosystem engineers, such as seagrasses. Outbreaks of wasting disease in seagrasses are one of a myriad of stressors associated with declining temperate and tropical seagrass meadows around the globe. Levels of eelgrass wasting disease are high in the San Juan Islands and Puget Sound. These increasing levels of disease are a threat to sustainability of eelgrass meadows, our …
Vignette 13: The Salish Sea Model, Tarang Khangaonkar P.E.
Vignette 13: The Salish Sea Model, Tarang Khangaonkar P.E.
Institute Publications
Given numerous concerns related to the health of the ecosystem and the possibility of anthropogenic impacts—from population growth to climate impacts, such as sea level rise—scientists, engineers, and planners seek an improved basic understanding of the biophysical behavior of the Salish Sea. The Salish Sea Model (SSM) development was motivated by this urgent need for a comprehensive predictive model that could diagnose water quality issues and concerns and serve as a planning tool in support of Puget Sound restoration efforts. The SSM was developed by the Pacific Northwest National Laboratory in collaboration with the Washington State Department of Ecology (Ecology) …
Vignette 15: Eelgrass Variations Ties To Sea Level Variations, Ronald Thom
Vignette 15: Eelgrass Variations Ties To Sea Level Variations, Ronald Thom
Institute Publications
This vignette shares an overview of the process and results of a long-term eelgrass monitoring effort at the mouth of Sequim Bay. Coupling these local long-term findings with research and monitoring across the Salish Sea and the globe will help better understand the longer-term effects of global warming and perhaps other human and natural-derived pressures on coastal ecosystems, and provide clues on how to make these systems more resilient to pressures.
Spike Protein Antibody Interactions Elicited By The Sars-Cov-2 Vaccine, Meghan Quinlan
Spike Protein Antibody Interactions Elicited By The Sars-Cov-2 Vaccine, Meghan Quinlan
WWU Honors College Senior Projects
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) arose as a novel virus in Wuhan China in December 2019. Then, as it rapidly spread across the world, it was declared a global health emergency by the World Health Organization in March 2020. SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), has dramatically disrupted both normal life and the economy. In the past year and a half, there have been over 175 million cases globally1 (as of June 15, 2021). High death rates, disruption to education, and widespread job loss has necessitated the desperate need for a vaccine against SARS-CoV-2. A …
The Graph Menagerie: An Exploration Of The Intersection Of Math, Biology, And Art, Maggie Barry
The Graph Menagerie: An Exploration Of The Intersection Of Math, Biology, And Art, Maggie Barry
WWU Honors College Senior Projects
This project explores interdisciplinarity with a focus on how math and biology can interact with art. My main objective was to create art by graphing the silhouettes of animals. I selected ten animals from a variety of classes and habitats and used a collection of equation types such as linear, quadratic, trigonometric, and circular to draw an outline of each animal. I performed stretches, compressions, and shifts to control the size and position of each equation and set domains and ranges to determine how much of each line was visible on the graph. In the first section of this paper, …
Can Arbuscular Mycorrhizal Fungi Protect Rubus Idaeus From The Effects Of Soil-Borne Disease And Parasitic Nematodes?, Erika J. Whitney
Can Arbuscular Mycorrhizal Fungi Protect Rubus Idaeus From The Effects Of Soil-Borne Disease And Parasitic Nematodes?, Erika J. Whitney
Institute of Environmental Toxicology & Chemistry Publications
Chemical controls for agricultural pests and diseases can have detrimental effects on human health and the environment. One alternative is to introduce soil microbes, such as arbuscular mycorrhizal fungi (AMF), that can improve crop resilience to pests and pathogens. While many plants form symbioses with AMF, not all crops benefit from inoculation. We conducted three studies that questioned the effect of AMF from various sources on R. idaeus growth and resilience to pests/pathogens. First, in a small observational study, we investigated whether AMF colonization of raspberry roots covaried with stand vigor. In two subsequent greenhouse experiments, we asked (1) if …
Occam's Razor Vol. 9 - Full (2019)
Why Georeferencing Matters: Introducing A Practical Protocol To Prepare Species Occurrence Records For Spatial Analysis, Trevor D.S. Bloom, Aquila Flower, Eric G. Dechaine
Why Georeferencing Matters: Introducing A Practical Protocol To Prepare Species Occurrence Records For Spatial Analysis, Trevor D.S. Bloom, Aquila Flower, Eric G. Dechaine
Environmental Sciences Faculty and Staff Publications
Species Distribution Models (SDMs) are widely used to understand environmental controls on species’ ranges and to forecast species range shifts in response to climatic changes. The quality of input data is crucial determinant of the model’s accuracy. While museum records can be useful sources of presence data for many species, they do not always include accurate geographic coordinates. Therefore, actual locations must be verified through the process of georeferencing. We present a practical, standardized manual georeferencing method (the Spatial Analysis Georeferencing Accuracy (SAGA) protocol) to classify the spatial resolution of museum records specifically for building improved SDMs. We used the …
Reduced Light Availability Diminishes Mycorrhizal Growth Response Of Invasive Forb, Regina O'Kelley
Reduced Light Availability Diminishes Mycorrhizal Growth Response Of Invasive Forb, Regina O'Kelley
WWU Honors College Senior Projects
Arbuscular mycorrhizal fungi (AMF) form mycorrhizae, a common, well-studied symbiotic relationship. Controls on the magnitude and direction of plant mycorrhizal growth response (MGR) remain obscured. Specifically, the influence of light availability in the MGR of an invasive forb, spotted knapweed Centaurea stoebe, has not been studied. Greenhouse studies exploring the growth response of knapweed to arbuscular mycorrhizae (AM) often fail to report light intensity levels, which could impact the quality of their data. I conducted a greenhouse experiment studying the MGR in spotted knapweed under shaded and unshaded conditions, designed to approximate light availability in ambient greenhouse and full-sun …
Constrained Sequence Alignment, Kyle Daling
Constrained Sequence Alignment, Kyle Daling
WWU Honors College Senior Projects
Constrained Sequence Alignment: A new algorithm designed to help biologists produce better alignment for protein sequences.
Occam's Razor Vol. 7 - Full (2017)
Nonalcoholic Fatty Liver Disease: Cause To Treatment, Tavleen Aulakh
Nonalcoholic Fatty Liver Disease: Cause To Treatment, Tavleen Aulakh
Occam's Razor
Imagine two individuals, both suffering from severe liver damage. With excess fat molecules concentrated in the hepatic cells, their livers are inflamed and scarred. These deteriorating livers are also supplementing the development of chronic obesity, diabetes, cardiovascular diseases, and hyperlipidemia. While one of these individuals is a middle-aged male with a long history of alcohol addiction and abuse, the other is only thirteen years old and has never consumed alcohol. This adolescent is suffering from nonalcoholic fatty liver disease (NAFLD).
Occam's Razor Vol. 6 - Full (2016)
Materials Collected By The Southern Branch Of The Uc Africa Expedition With A Report On Previously Unpublished Plio-Pleistocene Fossil Localities, Tesla A. Monson, Marianne F. Brasil, Leslea J. Hlusko
Materials Collected By The Southern Branch Of The Uc Africa Expedition With A Report On Previously Unpublished Plio-Pleistocene Fossil Localities, Tesla A. Monson, Marianne F. Brasil, Leslea J. Hlusko
Anthropology Faculty and Staff Publications
From 1947 to 1948, paleontologists from the University of California Museum of Paleontology (UCMP), Charles Camp and Frank Peabody, led the southern branch of the University of California’s Africa Expedition. While in South Africa, Camp and Peabody collected thousands of specimens excavated from more than 70 sites, 40 of which make up the Plio-Pleistocene South African assemblage at the UCMP. Materials collected by researchers accompanying the expedition are held at numerous repositories on the University of California Berkeley campus including the UCMP, the Museum of Vertebrate Zoology (MVZ), the Phoebe A. Hearst Museum of Anthropology and the University of California’s …