Physical Sciences and Mathematics Commons^™

Predicting Flavonoid Ugt Regioselectivity With Graphical Residue Models And Machine Learning., Arthur Rhydon Jackson

Electronic Theses and Dissertations

Machine learning is applied to a challenging and biologically significant protein classification problem: the prediction of flavonoid UGT acceptor regioselectivity from primary protein sequence. Novel indices characterizing graphical models of protein residues are introduced. The indices are compared with existing amino acid indices and found to cluster residues appropriately. A variety of models employing the indices are then investigated by examining their performance when analyzed using nearest neighbor, support vector machine, and Bayesian neural network classifiers. Improvements over nearest neighbor classifications relying on standard alignment similarity scores are reported.

A Neural Network Approach To Border Gateway Protocol Peer Failure Detection And Prediction, Cory B. White

Master's Theses

The size and speed of computer networks continue to expand at a rapid pace, as do the corresponding errors, failures, and faults inherent within such extensive networks. This thesis introduces a novel approach to interface Border Gateway Protocol (BGP) computer networks with neural networks to learn the precursor connectivity patterns that emerge prior to a node failure. Details of the design and construction of a framework that utilizes neural networks to learn and monitor BGP connection states as a means of detecting and predicting BGP peer node failure are presented. Moreover, this framework is used to monitor a BGP network …

The Development Of Hierarchical Knowledge In Robot Systems, Stephen W. Hart

Open Access Dissertations

This dissertation investigates two complementary ideas in the literature on machine learning and robotics--those of embodiment and intrinsic motivation--to address a unified framework for skill learning and knowledge acquisition. "Embodied" systems make use of structure derived directly from sensory and motor configurations for learning behavior. Intrinsically motivated systems learn by searching for native, hedonic value through interaction with the world. Psychological theories of intrinsic motivation suggest that there exist internal drives favoring open-ended cognitive development and exploration. I argue that intrinsically motivated, embodied systems can learn generalizable skills, acquire control knowledge, and form an epistemological understanding of the world …

Energetic Path Finding Across Massive Terrain Data, Andrew N. Tsui

Master's Theses

Before there were airplanes, cars, trains, boats, or bicycles, the primary means of transportation was on foot. Unfortunately, many of the trails used by ancient travelers have long since been abandoned. We present a software tool which can help visualize and predict where these forgotten trails might lie through the use of a human-centered cost metric. By comparing the paths generated by our software with known historical trails, we demonstrate how the tool can indicate likely trails used by ancient travelers. In addition, this new tool provides novel visualizations to better help the user understand alternate paths, effect of terrain, …

Text Summarization Using Concept Hierarchy, Xiaomei Huang

Doctoral Dissertations

This dissertation aims to create new sentences to summarize text documents. In addition to generating new sentences, this project also generates new concepts and extracts key sentences to summarize documents. This project is the first research work that can generate new key concepts and can create new sentences to summarize documents.

Automatic document summarization is the process of creating a condensed version of the document. The condensed version extracts the key contents from the original document. Most related research uses statistical methods that generate a summary based on word distribution in the document. In this dissertation, we create a summary …

A Method For Introducing Artificial Perception (Ap) To Improve Human Behavior Representation (Hbr) Using Agents In Synthetic Environments, Randall Bartholomew Garrett

Computational Modeling & Simulation Engineering Theses & Dissertations

While psychology has shown that perception is very important for the human decision process, agent perception has not been covered in sufficient detail within the agent directed simulation field. To contribute to such a solution, an open challenge lies in capturing the knowledge of human sciences, such as psychology, and making this knowledge usable for engineers. This dissertation addresses perception by describing an experimental method where agent perception simulates human perception. In particular, it presents engineering methods based on accepted psychological approaches resulting in a proof of concept. To prove the feasibility, an Artificial Perception (AP) meta-model is presented using …

Tree-D-Seek: A Framework For Retrieving Three-Dimensional Scenes, Saurav Mazumdar

Electrical & Computer Engineering Theses & Dissertations

In this dissertation, a strategy and framework for retrieving 3D scenes is proposed. The strategy is to retrieve 3D scenes based on a unified approach for indexing content from disparate information sources and information levels. The TREE-D-SEEK framework implements the proposed strategy for retrieving 3D scenes and is capable of indexing content from a variety of corpora at distinct information levels. A semantic annotation model for indexing 3D scenes in the TREE-D-SEEK framework is also proposed. The semantic annotation model is based on an ontology for rapid prototyping of 3D virtual worlds.

With ongoing improvements in computer hardware and 3D …

Agent Interactions In Decentralized Environments, Martin William Allen

Doctoral Dissertations 1896 - February 2014

The decentralized Markov decision process (Dec-POMDP) is a powerful formal model for studying multiagent problems where cooperative, coordinated action is optimal, but each agent acts based on local data alone. Unfortunately, it is known that Dec-POMDPs are fundamentally intractable: they are NEXP-complete in the worst case, and have been empirically observed to be beyond feasible optimal solution.

To get around these obstacles, researchers have focused on special classes of the general Dec-POMDP problem, restricting the degree to which agent actions can interact with one another. In some cases, it has been proven that these sorts of structured forms of interaction …

Fable: Finite Automata Based Learning Engine, Ryan Michael Jackson

Theses Digitization Project

The purpose of this thesis will be to demostrate the feasibility of building a system that is capable of automatically learning how to increase performance at a task that is presented to it by means of modeling the problem with a finite automation and the learning engine of FABLE. Current work in the field of automatic learning of FA's (Finite Automation) is mostly focused on the building of the FA itself. This thesis will instead focus on the automated building of FA models to allow better decisions to be made in the future.

A Fuzzy Hierarchical Decision Model And Its Application In Networking Datacenters And In Infrastructure Acquisitions And Design, Michael Khader

Walden Dissertations and Doctoral Studies

According to several studies, an inordinate number of major business decisions to acquire, design, plan, and implement networking infrastructures fail. A networking infrastructure is a collaborative group of telecommunications systems providing services needed for a firm's operations and business growth. The analytical hierarchy process (AHP) is a well established decision-making process used to analyze decisions related to networking infrastructures. AHP is concerned with decomposing complex decisions into a set of factors and solutions. However, AHP has difficulties in handling uncertainty in decision information. This study addressed the research question of solutions to AHP deficiencies. The solutions were accomplished through the …

Machine Learned Melody Matching Using Strictly Relative Musical Abstractions, Michael Joseph Kolta

Legacy Theses & Dissertations (2009 - 2024)

We implement and evaluate a machine learning approach to improve systems for searching a database of music via melodic sample. We explore symbolic and aural input queries and test our prototypes with extensive user surveys. Our main contribution is to combine the following four elements. First is to create a unique musical abstraction that accounts for both pitch and rhythm in a relative manner. Second, our system allows for approximate matching of imperfect queries via the utilization of the Smith-Waterman algorithm that was originally designed for approximate matching of molecular subsequences, such as DNA samples. Third is to design our …