Physical Sciences and Mathematics Commons^™

Computational Simulation Of Mass Transport And Energy Transfer In The Microbial Fuel Cell System, Shiqi Ou

Doctoral Dissertations

This doctoral dissertation introduces the research in the computational modeling and simulation for the microbial fuel cell (MFC) system which is a bio-electrochemical system that drives a current by using bacteria and mimicking bacterial interactions found in nature. The numerical methods, research approaches and simulation comparison with the experiments in the microbial fuel cells are described; the analysis and evaluation for the model methods and results that I have achieved are presented in this dissertation.

The development of the renewable energy has been a hot topic, and scientists have been focusing on the microbial fuel cell, which is an environmentally-friendly …

Nonlinear Partial Differential Equations, Their Solutions, And Properties, Prasanna Bandara

Boise State University Theses and Dissertations

Although valuable understanding of real-world phenomena can be gained experimentally, it is often the case that experimental investigations can be found to be limited by financial, ethical or other constraints making such an approach impractical or, in some cases, even impossible. To nevertheless understand and make predictions of the natural world around us, countless processes encountered in the physical and biological sciences, engineering, economics and medicine can be efficiently described by means of mathematical models written in terms of ordinary or/and partial differential equations or their systems. Fundamental questions that arise in the modeling process need care that relies on …

Spreading Speeds And Traveling Waves In Some Population Models., Quancheng Meng

Electronic Theses and Dissertations

Virtually every ecosystem has been invaded by exotic organisms with potentially drastic consequences for the native fauna or flora. Studying the forms and rates of invading species has been an important topic in spatial ecology. We investigate two two-species competition models with Allee effects in the forms of reaction-diffusion equations and integro-difference equations. We discuss the spatial transitions from a mono-culture equilibrium to a coexistence equilibrium or a different mono-culture equilibrium in these models. We provide formulas for the spreading speeds based on the linear determinacy and show the results on the existence of traveling waves. We also study a …

A Physiologically-Based Pharmacokinetic Model For Vancomycin, Rebekah White

Undergraduate Honors Theses

Vancomycin is an antibiotic used for the treatment of systemic infections. It is given

intravenously usually every twelve or twenty-four hours. This particular drug has a

medium level of boundedness, with approximately fty percent of the drug being free

and thus physiologically eective. A physiologically-based pharmacokinetic (PBPK)

model was used to better understand the absorption, distribution, and elimination of

the drug. Using optimal parameters, the model could be used in the future to test

how various factors, such as BMI or excretion levels, might aect the concentration

of the antibiotic.

Computational Analysis Of The Sir Mathematical Model For The Dengue Fever, Joseph Phillip Diaz

Theses and Dissertations

Dengue fever is a disease affecting people in more than 100 countries. Here we consider a host and vector model for the transmission of dengue fever. This SIR model consists of three compartments of susceptible, infective and removed for host (human) and two compartments of susceptible and infective for vector (dengue mosquitos). These five compartments yield five coupled nonlinear ordinary differential equations (ODEs). After non-dimensionalization, we have a system of three nonlinear ODEs. Reproductive number and two equilibrium points are calculated for various cases. Simulation is carried out for susceptible, infective and removed and the results are presented in graphical …

Border-Collision Bifurcations Of Cardiac Calcium Cycling, Jacob Michael Kahle

Masters Theses

In this thesis, we study the nonlinear dynamics of calcium cycling within a cardiac cell. We develop piecewise smooth mapping models to describe intracellular calcium cycling in cardiac myocyte. Then, border-collision bifurcations that arise in these piecewise maps are investigated. These studies are carried out using both one-dimensional and two-dimensional models. Studies in this work lead to interesting insights on the stability of cardiac dynamics, suggesting possible mechanisms for cardiac alternans. Alternans is the precursor of sudden cardiac arrests, a leading cause of death in the United States.

Investigating Advection Control In Competitive Pde Systems And Environmental Transmission In Johne's Disease Ode Models, Kokum Rekha De Silva

Doctoral Dissertations

We extend the work on optimal control of advective direction in a reaction-diffusion population model to a system representing two competing populations. We investigate the choice of movement direction to benefit a population. First, the advective direction in one of the populations in a competition model is the control. Next, we extend the work by taking the advective directions of both populations as controls. In both these cases the objective is to maximize a weighted combination of the two populations while minimizing the cost involved in the species movement. Mathematical analysis is completed to derive the optimality system and numerical …

Studies Of Contingent Capital Bonds, Jingya Li

Electronic Thesis and Dissertation Repository

A contingent capital bond (CCB) is a subordinated security that converts to common shares when a predetermined trigger is breached. The 2008 financial crisis and the Basel III motivate the issuance of CCBs, aiming to mitigate the too-big-to-fail problem in financial distress and to resolve financial institutions by bailing in with the firm’s own capital rather than a bailing out using the taxpayers’ money.

Within the structural modelling framework, we consider the pricing of CCBs with an affine geometric Brownian motion by assuming that coupon payments have impact on the asset value dynamics. We extend the capital structure into four …

Using An Agent-Based Model To Study The Effect Of Reproductive Skew On Mongoose Populations, Stacy Lee Mowry

Theses and Dissertations

Reproductive skew is the name given to the unequal partitioning of breeding

within social groups. Within these groups a mating hierarchy emerges wherein one dominant mating pair holds an unproportional majority of the group's reproductive benefit, while other members mate infrequently, yet allocate energy and resources toward the offspring of the dominant group members. In this paper, we use an agent-based model, which mimics dwarf and banded mongoose populations, to investigate how reproductive skew aftects the speed natural selection, and thus how reproductive skew affects fitness. The results of the model show that due to the geometric structure of skewed …

Evolution Of Mobile Promoters In Prokaryotic Genomes., Mahnaz Rabbani

Electronic Thesis and Dissertation Repository

Mobile genetic elements are important factors in evolution, and greatly influence the structure of genomes, facilitating the development of new adaptive characteristics. The dynamics of these mobile elements can be described using various mathematical and statistical models. In this thesis, we focus on a specific category of mobile genetic elements, i.e. mobile promoters, which are mobile regions of DNA that initiate the transcription of genes. We present a class of mathematical models for the evolution of mobile promoters in prokaryotic genomes, based on data obtained from available sequenced genomes. Our novel location-based model incorporates two biologically meaningful regions of the …

Testing The Adequacy Of A Semi-Markov Process, Richard S. Seymour

Theses and Dissertations

Due to the versatility of its structure, the semi-Markov process is a powerful modeling tool used to describe complex systems. Though similar in structure to continuous time Markov chains, semi-Markov processes allow for any transition time distribution which enables these processes to t a wider range of problems than the continuous time Markov chain. While semi-Markov processes have been applied in fields as varied as biostatistics and finance, there does not exist a theoretically-based, systematic method to determine if a semi-Markov process accurately fits the underlying data used to create the model. In fields such as regression and analysis of …

Modeling Radiation Effectiveness For Inactivation Of Bacillus Spores, Emily A. Knight

Theses and Dissertations

This research models and analyzes the inactivation of Bacillus spores following a radiation exposure and the process enacted by the Bacillus spore to repair the resulting damage. Irradiation of a spore and the medium surrounding the spore induces chemical reactions that produce reactive oxygen species (ROS). This research will consider the reaction- diffusion of these ROS throughout the spore. These ROS can react with the spore's DNA and enzymes to degrade them to such an extent that the DNA cannot be repaired or replicated, thus causing spore death. In order to survive a dose of radiation, a spore must repair …

Secondary Electrohydrodynamic Flow Generated By Corona And Dielectric Barrier Discharges, Mohammadreza Ghazanchaei

Electronic Thesis and Dissertation Repository

One of the main goals of applied electrostatics engineering is to discover new perspectives in a wide range of research areas. Controlling the fluid media through electrostatic forces has brought new important scientific and industrial applications. Electric field induced flows, or electrohydrodynamics (EHD), have shown promise in the field of fluid dynamics. Although numerous EHD applications have been explored and extensively studied so far, most of the works are either experimental studies, which are not capable to explain the in depth physics of the phenomena, or detailed analytical studies, which are not time effective. The focus of this study is …

Per-Contact Infectivity Of Hcv Associated With Injection Exposures In A Prospective Cohort Of Young Injection Drug Users In San Francisco, Ca (Ufo Study), Yuridia Leyva

Mathematics & Statistics ETDs

Sharing needles and ancillary injection drug equipment places injection drug users (IDU) at risk for Hepatitis C Virus (HCV), a highly infectious blood-borne virus. A limited number of studies have analyzed the per-contact infectivity of HCV associated with the use of previously-used needles, but per-contact infectivity of ancillary injecting equipment has not been previously investigated. Our goal is to estimate the per-contact infectivity of HCV associated with (1) injecting with another person's previously-used needle, classified as receptive needle sharing (RNS), and (2) using another person's previously-used ancillary injecting equipment, such as cookers to melt drugs and cottons to strain impurities …

Tropical Cyclone Wind Hazard Assessment For Southeast Part Of Coastal Region Of China, Sihan Li

Electronic Thesis and Dissertation Repository

Tropical cyclone (TC) or typhoon wind hazard and risk are significant for China. The return period value of the maximum typhoon wind speed is used to characterize the typhoon wind hazard and assign wind load in building design code. Since the historical surface observations of typhoon wind speed are often scarce and of short period, the typhoon wind hazard assessment is often carried out using the wind field model and TC track model. For a few major cities in the coastal region of mainland China, simple or approximated wind field models and a circular subregion method (CSM) have been used …

Topographic Signatures Of Geodynamics, Samuel G. Roy

Electronic Theses and Dissertations

The surface of the Earth retains an imperfect memory of the diverse geodynamic, climatic, and surface transport processes that cooperatively drive the evolution of Earth. In this thesis I explore the potential of using topographic analysis and landscape evolution models to unlock past and/or present evidence for geodynamic activity. I explore the potential isolated effects of geodynamics on landscape evolution, particularly focusing on two byproducts of tectonic strain: rock displacement and damage. Field evidence supports a strong correlation between rock damage and erodibility, and a numerical sensitivity analysis supports the hypothesis that an order of magnitude weakening in rock, well …

Numerical Solutions Of Generalized Burgers' Equations For Some Incompressible Non-Newtonian Fluids, Yupeng Shu

University of New Orleans Theses and Dissertations

The author presents some generalized Burgers' equations for incompressible and isothermal flow of viscous non-Newtonian fluids based on the Cross model, the Carreau model, and the Power-Law model and some simple assumptions on the flows. The author numerically solves the traveling wave equations for the Cross model, the Carreau model, the Power-Law model by using industrial data. The author proves existence and uniqueness of solutions to the traveling wave equations of each of the three models. The author also provides numerical estimates of the shock thickness as well as maximum strain $\varepsilon_{11}$ for each of the fluids.

Comparison Of Two Parameter Estimation Techniques For Stochastic Models, Thomas C. Robacker

Electronic Theses and Dissertations

Parameter estimation techniques have been successfully and extensively applied to deterministic models based on ordinary differential equations but are in early development for stochastic models. In this thesis, we first investigate using parameter estimation techniques for a deterministic model to approximate parameters in a corresponding stochastic model. The basis behind this approach lies in the Kurtz limit theorem which implies that for large populations, the realizations of the stochastic model converge to the deterministic model. We show for two example models that this approach often fails to estimate parameters well when the population size is small. We then develop a …

Mathematical Studies Of The Glucose-Insulin Regulatory System Models., Minghu Wang

Electronic Theses and Dissertations

Three dynamic models are proposed to study the mechanism of glucose-insulin regulatory system and the possible causes of diabetes mellitus. The progression of diabetes comes along with the apoptosis of pancreatic beta-cells. A dynamical system model is formulated based on physiology and studied by geometric singular perturbation theory. The analytical studies reveal rich analytical features, such as persistence of solutions, Hopf bifurcation and backward bifurcation, while numerical studies successfully fit available longitudinal T2DM data of Pima Indian tribe. These studies together not only validate our model, but also point out key intrinsic factors leading to the development of T2DM. We …

The Pc-Tree Algorithm, Kuratowski Subdivisions, And The Torus., Charles J. Suer

Electronic Theses and Dissertations

The PC-Tree algorithm of Shih and Hsu (1999) is a practical linear-time planarity algorithm that provides a plane embedding of the given graph if it is planar and a Kuratowski subdivision otherwise. Remarkably, there is no known linear-time algorithm for embedding graphs on the torus. We extend the PC-Tree algorithm to a practical, linear-time toroidality test for K3;3-free graphs called the PCK-Tree algorithm. We also prove that it is NP-complete to decide whether the edges of a graph can be covered with two Kuratowski subdivisions. This greatly reduces the possibility of a polynomial-time toroidality testing algorithm based solely on edge-coverings …

Chaos In Semiflows., Chad Money

Electronic Theses and Dissertations

All the common notions about dynamics in cascades - topological transitivity, periodic points, sensitive dependence, and so forth - can be formulated in the context of a general abelian semiflow. Many intricate results, such as the redundancy of Devaney chaos, remain true (with very minor qualifications) in this wider context. However, when we examine general monoid actions on a product space, it turns out that the topological and algebraic structure of N0 plays a large role in the preservation of chaotic properties. In order to obtain meaningful results in that arena, new ideas such as “directional” and “synnrec” are introduced, …

Strong Quota Pair Systems And May's Theorem On Median Semilattices., Lucas Hoots

Electronic Theses and Dissertations

Kenneth May [16], in 1952, characterized simple majority rule in terms of three conditions: anonymity, neutrality, and positive responsiveness. In this thesis, we remove the condition of neutrality and obtain a characterization of the class of voting rules that satisfy anonymity and positive responsiveness. The key concept in this characterization is the notion of a strong quota pair system. The situation with two alternatives studied by May can be thought of as a very simple example of a finite median semilattice. The main result of this thesis is an extension of May’s theorem to the domain of all finite median …

Order Automorphisms On The Lattice Of Residuated Maps Of Some Special Nondistributive Lattices., Erika D. Foreman

Electronic Theses and Dissertations

The residuated maps from a lattice L to itself form their own lattice, which we denote Res(L). In this dissertation, we explore the order automorphisms on the lattice Res(L) where L is a finite nondistributive lattice. It is known that left and right composition of f ∈ Res(L) with automorphisms of L yields an order automorphism of Res(L). It begs the question, then, if all order automorphisms of Res(L) can be classified as such.

On The Selection Of A Good Shape Parameter For Rbf Approximation And Its Application For Solving Pdes, Lei-Hsin Kuo

Dissertations

Meshless methods utilizing Radial Basis Functions~(RBFs) are a numerical method that require no mesh connections within the computational domain. They are useful for solving numerous real-world engineering problems. Over the past decades, after the 1970s, several RBFs have been developed and successfully applied to recover unknown functions and to solve Partial Differential Equations (PDEs).
However, some RBFs, such as Multiquadratic (MQ), Gaussian (GA), and Matern functions, contain a free variable, the shape parameter, c. Because c exerts a strong influence on the accuracy of numerical solutions, much effort has been devoted to developing methods for determining shape parameters which provide …

Solution Of Nonlinear Time-Dependent Pde Through Componentwise Approximation Of Matrix Functions, Alexandru Cibotarica

Dissertations

Exponential propagation iterative (EPI) methods provide an efficient approach to the solution of large stiff systems of ODE, compared to standard integrators. However, the bulk of the computational effort in these methods is due to products of matrix functions and vectors, which can become very costly at high resolution due to an increase in the number of Krylov projection steps needed to maintain accuracy. In this dissertation, it is proposed to modify EPI methods by using Krylov subspace spectral (KSS) methods, instead of standard Krylov projection methods, to compute products of matrix functions and vectors. This improvement allowed the benefits …

Mechanisms For Social Influence, Jeremy David Auerbach

Masters Theses

Throughout the thesis, I study mathematical models that can help explain the dependency of social phenomena in animals and humans on individual traits. The first chapter investigates consensus building in human groups through communication of individual preferences for a course of action. Individuals share and modify these preferences through speaker listener interactions. Personality traits, reputations, and social networks structures effect these modifications and eventually the group will reach a consensus. If there is variation in personality traits, the time to reach consensus is delayed. Reputation models are introduced and explored, finding that those who can best estimate the average initial …

Population Modeling For Resource Allocation And Antimicrobial Stewardship, Jason Bintz

Doctoral Dissertations

This dissertation contains two types of population models with applications in conservation biology and epidemiology. In particular, it considers models for resource allocation and antimicrobial stewardship.

In a population model with a parabolic differential equation and density dependent growth, we study the problem of allocating resources to maximize the net benefit in the conservation of a single species while the cost of the resource allocation is minimized. The net benefit is measured in terms of maximizing population abundance and the goal of maximizing abundance is divided between the goal of maximizing the overall abundance across space and time and the …

Domain Decomposition Methods For Discontinuous Galerkin Approximations Of Elliptic Problems, Craig Dwain Collins

Doctoral Dissertations

The application of the techniques of domain decomposition to construct effective preconditioners for systems generated by standard methods such as finite difference or finite element methods has been well-researched in the past few decades. However, results concerning the application of these techniques to systems created by the discontinuous Galerkin method (DG) are much more rare.

This dissertation represents the effort to extend the study of two-level nonoverlapping and overlapping additive Schwarz methods for DG discretizations of second- and fourth-order elliptic partial differential equations. In particular, the general Schwarz framework is used to find theoretical bounds for the condition numbers of …

Numerical Methods For Deterministic And Stochastic Phase Field Models Of Phase Transition And Related Geometric Flows, Yukun Li

Doctoral Dissertations

This dissertation consists of three integral parts with each part focusing on numerical approximations of several partial differential equations (PDEs). The goals of each part are to design, to analyze and to implement continuous or discontinuous Galerkin finite element methods for the underlying PDE problem.

Part One studies discontinuous Galerkin (DG) approximations of two phase field models, namely, the Allen-Cahn and Cahn-Hilliard equations, and their related curvature-driven geometric problems, namely, the mean curvature flow and the Hele-Shaw flow. We derive two discrete spectrum estimates, which play an important role in proving the sharper error estimates which only depend on a …

The Effect Of Diversification On The Dynamics Of Mobile Genetic Elements In Prokaryotes: The Birth-Death-Diversification Model, Nicole E. Drakos

Electronic Thesis and Dissertation Repository

Mobile genetic elements (MGEs) are ubiquitous among prokaryotes, and have important implications to many areas, such as the evolution of certain genes, bioengineering and the spread of antibiotic resistance. In order to understand the complex dynamics of MGEs, mathematical models are often used. One model that has been used to describe the dynamics of mobile promoters (a class of MGEs) is the birth-death-diversification model. This model is unique in that it allows MGEs to diversify to create new families. In this thesis, I analyze the dynamics of this model; in particular, I examine equilibrium distributions, extinction probabilities and mean time …