Physical Sciences and Mathematics Commons^™

Nutrient Dynamics Of Freshwater Estuarine Sediments Disturbed By Dredging, Ryan Allan John Roekle

Theses and Dissertations

This study examined the nutrient environment of sediments in the Milwaukee River estuary and the dynamics of those nutrients during simulated disturbance experiments within the context of large-scale dredging remediation. Surface sediments were collected from throughout the Milwaukee estuary (including river, harbor, and nearshore stations) by PONAR, centrifuged to separate porewater (interstitial water) from solid material, and filtered to further isolate and stabilize dissolved material. Porewaters were analyzed for dissolved nutrients including ammoniacal nitrogen (AN), nitrate, nitrite, and soluble reactive phosphorus (SRP). Surface sediment porewaters within the estuary were often highly enriched in AN and SRP, which were often 10-2000x …

Effect Of Elevated Temperature And Roundup Exposure On Oxidative Stress And Antioxidant Status In The American Oyster, Afsana Chowdhury

Theses and Dissertations

Aquatic organisms are frequently exposed to various environmental stressors. In this study, we observed the short-term (1-week) combined dose-dependent effect of Roundup, a glyphosate-based herbicide, and high temperature (30°C) on the morphology of gills and digestive glands, expression of heat shock protein-70 (HSP70), dinitrophenyl protein (DNP), nitrotyrosine protein (NTP), antioxidant enzymes such as catalase (CAT) and superoxidase dismutase (SOD) in tissues of American oyster (Crassostrea virginica). Histological analyses showed an increase in mucous production in the gills and digestive glands, hemocyte aggregation in the connective tissues as well as structural change of the lumen in the digestive glands …

Methods For Drone Trajectory Analysis Of Bottlenose Dolphins (Tursiops Truncatus), Jillian D. Bliss

Theses and Dissertations

With the increase in the use of UAS (Unmanned Aerial Systems) for marine mammal research, there is a need for the development of methods of analysis to transform UAS high resolution video into quantitative data. This study sought to develop a preliminary method of analysis that would quantify and present a way to visualize the dynamics and relative spatial distribution and changes in distribution of bottlenose dolphins (Tursiops truncatus) in the waters of Turneffe Atoll, Belize. This approach employs a previously developed video tracking program ‘Keypoint Tracking’ that enables manual tracking of individual dolphins and the creation of …

South Texas Wildlife Activity Across A Fragmented Landscape And Road Mitigation Corridor, Caitlin K. Brett

Theses and Dissertations

Wildlife crossing structures (WCS) and roadside fencing are commonly installed to mitigate habitat fragmentation, wildlife road mortalities, and other negative effects that roads can have on the surrounding landscape. Eight such WCS were constructed below Farm-to-Market (FM)106 in Cameron County, Texas, across a 16 km corridor transecting the Laguna Atascosa National Wildlife Refuge. These WCS, paired with adjacent roadside fencing, were intended to prevent road mortalities of the endangered ocelot (Leopardus pardalis) and to mitigate the barrier effect of FM106 on this and other meso-mammal species. This study will analyze camera trap data from roadside and habitat reference …

Assessing The Potential For Lightning-Induced Damage In Commercial Broiler Houses In Mississippi And Alabama, Matthew R. Rowland

Theses and Dissertations

Modern broiler houses are expensive to build, maintain, and insure. Protecting them from extreme weather events is a major concern to producers, integrators, and insurance companies. Lightning strikes can cause catastrophic fires and electrical damage and can lead to costly bird losses. A greater understanding of the impact of lightning on the commercial broiler industries of MS and AL is needed. The objectives of this research were collection of baseline resistance data for broiler houses and equipment in both states, and mapping lightning strike densities across MS and AL, evaluating annual, monthly, seasonal, and diurnal patterns. 63.5% of surveyed broiler …

Transcriptomics And Toxcast Data Identify Bioeffects In Zebrafish Embryos Exposed To Chemical Mixtures In An Effluent-Dominated Stream, Emma Meade

Theses and Dissertations

Wastewater treatment plant (WWTP) effluent-dominated streams provide critical habitat for aquatic organisms but also continually expose them to complex mixtures of pharmaceuticals and other contaminants of emerging concern (CECs) that can potentially impair growth, behavior, and reproduction. Limited toxicity data on the adverse biological impacts of in vivo exposure to these mixtures make it difficult to assess risk for aquatic organisms, particularly with respect to pharmaceuticals whose designed bioactivity often extends beyond conventionally monitored biological pathways. To address this knowledge gap, the goal of this thesis was to identify biomarkers of exposure to complex CEC mixtures relevant to specific chemicals …

Molecular Weight Distributions And Size-Dependent Composition Of Dissolved Organic Matter In The Aquatic Continuum, Hui Lin

Theses and Dissertations

Dissolved organic matter (DOM) in aquatic environments is one of the most important carbon reservoirs in global carbon cycling. The molecular weight of DOM is strongly related to a great number of biogeochemical reactions, influencing ecological functions and the fate of bioactive elements in aquatic ecosystems. A new technique coupling flow field-flow fractionation with fluorescence excitation-emission matrix (EEM) and parallel factor (PARAFAC) analysis was developed to elucidate the variations in DOM composition and optical properties with molecular weight in the individual samples and their changes along the aquatic continuum. Based on the novel coupling technique, variations in DOM characteristics were …

Health Goals For Perfluorinated Alkyl Substances (Pfas): A Review Of Branched Isomers, The Role Of Industrial Sources, And The Implications Of Pfas In Biosolids On End-Of-Life Disposal Methods, Katarina Schulz

Theses and Dissertations

Per- and polyfluorinated alkyl substances, or PFAS, have been used for over half a century, but have become an emerging contaminant of significant concern due to their newly found widespread occurrence and recalcitrance in the environment, their tendency to bioaccumulate, and the health effects now associated with a very low level of exposure. Many gaps in knowledge remain about the fate of these chemicals in the environment and the extent of their impacts on biota. This thesis aims to fill some of the recognized gaps in knowledge: differences between linear and branched isomers of PFAS, predicting the presence of PFAS …

Variation In Personality Among Semi-Wild Myanmar Timber Elephants, Sateesh Venkatesh

Theses and Dissertations

This study examines two personality traits: exploration and neophobia, which could influence human-elephant conflicts. Thirty-one semi-wild elephants were tested over two trials using a custom novel puzzle tube containing three tasks and three rewards. Our studies show that elephants do vary significantly between individuals in both exploration and neophobia.

Analysis Of Plant Biomass Production Comparing Decoupled Aquaponics Against Equivalent Single-Loop Aquaponic And Hydroponic Systems Growing Lactuca Sativa, Haley Luise Lucas

Theses and Dissertations

Aquaponics is an emerging method of agriculture in which fish and plants are grown in an enclosed and recirculating environment. The method mimics a relationship found in nature where fish waste provides nutrients for plants and plants cleanse the water for the benefit of the fish. This symbiotic relationship has proven to be a sustainable method of agriculture in which there is less water use, no need for pesticides or herbicides, recycling of nutrient waste and a smaller spatial footprint. However, the production of both plants and fish in a recirculating aquaponics system has produced less yield and profit when …

Influence Of Landscape Factors On Wildlife Presence And Road Mitigation Structure Performance, Taylor M. Hopkins

Theses and Dissertations

There are roughly 80 ocelots (Leopardus pardalis) remaining in the United States, with the entire population constrained to south Texas, with roadkill being a predominant source of mortality. To prevent additional roadkill and maintain wildlife movement, Texas Department of Transportation constructed 11.9 kilometers of wildlife exclusion fencing, 5 wildlife crossing structures (WCS), and 18 wildlife guards on State Highway 100. This thesis focused on determining the effort required for a control-impact monitoring study, the influence of biotic and abiotic factors around the roadway on wildlife presence, and the performance of mitigation structures and the road mitigation corridor. This …

The Influence Of Human Disturbance On Wildlife Use Of A Highway In South Texas, Thomas J. Yamashita

Theses and Dissertations

Roads can greatly impact wildlife. Wildlife vehicle collisions contribute to population declines while disturbance from human activity may prevent wildlife from using areas around roads. The construction of mitigation structures may lessen these effects through fine scale modification of animal use of roadside areas. In this thesis, how the construction of wildlife mitigation structures impacted the fine scale distribution of wildlife on State Highway 100 in Cameron County, Texas was examined. Spatial and temporal scale may also influence these relationships. The relationship between human activity and wildlife activity around the highway was explored and how the distribution of wildlife road …

Survival Of Off-Host Rhipicephalus (Boophilus) Annulatus (Acari: Ixodidae) Larvae In Study Arenas In Relation To Climatic Factors And Habitats In South Texas, Usa, Emily Jesselle Zamora

Theses and Dissertations

The cattle fever tick, Rhipicephalus (Boophilus) annulatus (Say), is an economically destructive arthropod because of its ability to vector bovine babesiosis. Cattle fever ticks can spend more than 90% of their life cycle as questing larvae, but the effect of climatic factors on their off-host behavior and survival is unclear. The goal of this study was to measure the effects of specific ecological factors on off-host larvae in nature. The study was conducted in a south Texas pasture over a 20-mo period, during which time larval populations were surveyed and ambient weather variables - relative humidity and temperatures – were …

Wildlife Use Of Road Mitigation Structures In Relation To Their Construction, Structural Characteristics, And Environmental Factors Along A South Texas Highway, Anna D. Rivera Roy

Theses and Dissertations

Roads are known to negatively impact wildlife by fragmenting habitat and mortality caused by wildlife-vehicle collisions. Road mitigation structures, such as wildlife crossing structures (WCS), wildlife guards (WG), and fencing are commonly used to address the issue of roads. In South Texas, such structures were built or modified along State Highway (SH) 100 in Cameron County as an effort to conserve the endangered ocelot (Leopardus pardalis). Camera traps were deployed to monitor these structures as a way to assess their effectiveness in restricting wildlife entry into the roadway with fencing and WG and conveying wildlife movement across roads …

A Landscape-Scaled And Community Ecology Approach To Wildlife Corridor Design In South Texas, James A. Stilley

Theses and Dissertations

A formidable challenge in landscape ecology is developing a sound resolution to mitigate the impacts of habitat fragmentation and restore connectivity to a degraded landscape. The problem is worldwide landscapes are becoming primarily anthropogenic and areas set aside for wildlife are small and isolated. Researchers’ have developed the concept of the wildlife corridor to mediate this situation but a proper methodology to implement this concept is still in its infancy. This study aims to uncover a quantitative and repeatable wildlife corridor design methodology based on the least cost analysis strategy with both a singular focal taxa approach and a comprehensive …

Effects Of Elevated Temperature On Gonadal Functions, Cellular Apoptosis, And Oxidative Stress In Atlantic Sea Urchin (Arbacia Punctulata), Jackson B. Johnstone

Theses and Dissertations

Increasing surface sea water temperatures effect on growth, reproduction and development in marine organisms. Sea urchins are excellent indicator species and ideal model organisms to focus on. In this study, I tested the effect of higher temperatures on reproductive functions, heat shock protein (HSP, a chaperone protein produced by cells in response to heat stress) and nitrotyrosine protein (NTP, an indicator of reactive nitrogen species, RNS) expressions, cellular apoptosis, and ceolomic fluid (CF, a body fluid which regulates important physiological processes) conditions in Atlantic sea urchin at three different temperatures. Ten sea urchins were placed in each of six aquariums …

Effects Of Global Warming On Gonadal Functions, Cellular Apoptosis, And Oxidative Stress In The American Oyster, Sarah B. Nash

Theses and Dissertations

Global warming due to climate change is predicted to intensify the heat stress in marine and coastal organisms, affecting their development, growth and reproductive functions. In this study. I analyzed gonadal development, heat shock protein 70 (HSP70), nitrotyrosine protein (NTP), dinitrophenyl (DNP) expressions, cellular apoptosis, and coelomic fluid (CF) conditions in American oyster. Oysters were placed in six aquariums and exposed to control (24°C), medium (28°C), and high (32°C) temperatures for one week. Higher temperature significantly decreased the number of eggs and sperm. CF protein concentrations also declined compared to control. In contrast, CF pH and HSP70 expression in gonad …

A Snapshot Of The Age, Growth, And Reproductive Status Of Gray Triggerfish (Balistes Capriscus, Gmelin 1789) On Three Artificial Reefs In The Northwest Gulf Of Mexico, Adam M. Lee

Theses and Dissertations

Age, growth, and reproductive status of gray triggerfish (Balistes capriscus) were identified from 2015-2016 on artificial reefs in the northwest Gulf of Mexico. Individuals ranged from 232-432 mm fork length with and a mean fork length of 319 mm. Individuals from age 0.2 to 5.2 yrs were observed with a weight to length relationship of Wg = 1.1 x -104 x FL2.7 (r2 = 0.94, n = 112), where FL = fork length (mm) and Wg = weight (g). A von Bertalanffy growth equation of Lt = 326(1 - e - 0.9 (t + 1.71)) was calculated irrespective …

Impacts Of Habitat Attributes And Community Gardens On Urban Bird Communities, Samuel Glenn Ortiz

Theses and Dissertations

The Rio Grande Valley of Southern Texas is a major agricultural region yet has some of the highest hunger rates in the USA. Urbanization and agriculture affect biodiversity, which is well studied, but little is known about how agriculture affects biodiversity in urban areas. We investigated how different urban attributes, including those related to urban farming, impact bird communities in Brownsville and Harlingen, TX, and compared sites that have community gardens to those that do not. To study three key urban habitat characteristics, we identified sites that exhibited all possible combinations of these factors, quantified land cover classes related to …

A Hemimysis Driven Novel Ecosystem At A Modified Boulder Breakwall, Eric John Geisthardt

Theses and Dissertations

The US Army Corps of Engineers (USACE) is mandated to maintain and repair aging breakwall structures in all commercial ports on the Great Lakes. In May of 2014, the construction of Milwaukee Harbor USACE “green” breakwall (GBW) reconciliation created complex rocky aquatic habitat by depositing cobble-sized stone as a veneer over standard 6-10 ton boulders, thus creating “control” (boulder) and “treatment” (cobble) habitats. The breakwall is home to a prolific population of Hemimysis anomala, the introduced Ponto-Caspian mysid, which is significantly more abundant on cobble versus boulders (p<0.05, using a novel trap for Hemimysis). Fish and forage communities were sampled in 2015 and 2016 using a combination of experimental and micromesh gill nets, night scuba diving surveys, and a novel Hemimysis trap. This nearshore lithophilic mysid appears to provide a significant new seasonal food resource in the Milwaukee Harbor for pelagic prey fishes during inshore spawning migrations and upwelling events. Alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) fed heavily on Hemimysis with some individuals consuming hundreds of mysids. Night scuba diving surveys and gill netting confirmed that rainbow smelt preferred to forage on the cobble section (p<0.05), and also consumed more Hemimysis there than they did at the control breakwall site (p<0.05). Hemimysis were also the primary food item consumed by nearshore game fishes such as YOY yellow perch (Perca flavescens), YOY largemouth bass (Micropterus salmoides), and juvenile rock bass (Ambloplites rupestris) caught at the breakwall. This study provides the first documented evidence that where abundant in the Laurentian Great Lakes, Hemimysis do have the ability to significantly impact local food webs and drive the feeding ecology of both pelagic transient and nearshore resident fishes.

Development Of An Automated Detection System For Nitrite In Aquatic Environments, Tim Schierenbeck

Theses and Dissertations

The main objective of the project is to develop an automated nitrite sensor for use in aquatic environments, and more specifically for use in recirculating aquaculture systems (RAS), where monitoring can help sustain a controlled environment, protect against nitrite intoxication, and promote fish health. Detecting nitrite manually with semi-quantitative colorimetric test kits, although inexpensive and simple, is prone to inter-user variability and poor sensitivity. An automated nitrite sensor has potential to provide higher resolution measurements at both concentration and time scales and can serve as a research tool for the study of filtration systems essential in maintaining a healthy RAS …

Using An Agent-Based Model To Study The Effect Of Reproductive Skew On Mongoose Populations, Stacy Lee Mowry

Theses and Dissertations

Reproductive skew is the name given to the unequal partitioning of breeding

within social groups. Within these groups a mating hierarchy emerges wherein one dominant mating pair holds an unproportional majority of the group's reproductive benefit, while other members mate infrequently, yet allocate energy and resources toward the offspring of the dominant group members. In this paper, we use an agent-based model, which mimics dwarf and banded mongoose populations, to investigate how reproductive skew aftects the speed natural selection, and thus how reproductive skew affects fitness. The results of the model show that due to the geometric structure of skewed …

Neurobehavioral And Gene Expression Effects Of Early Embryonic Methylmercury Exposure In Yellow Perch (Perca Flavescens) And Zebrafish (Danio Rerio) Larvae, Francisco Xavier Mora Zamorano

Theses and Dissertations

Methylmercury (MeHg) is a pervasive and persistent neurotoxic environmental pollutant known to affect the behavior of fish, birds and mammals. The present study addresses the neurobehavioral and gene expression effects of MeHg in yellow perch (Perca flavescens) and zebrafish (Danio rerio) embryos. The rationale for this study originated from an interest to understand the behavioral and molecular phenotypes of environmental MeHg exposure in the yellow perch, an ecologically and economically relevant species of the North American Great Lakes region. Both MeHg and the yellow perch coexist in a common ecosystem: the North American Great Lakes. However, the effects of this …

Phosphorus Recycling By Profunda Quagga Mussels In Lake Michigan, Caroline Mosley

Theses and Dissertations

Quagga mussels (Dreissena rostiformis bugensis) act as ecosystem engineers in the southern basin of Lake Michigan, altering physical habitats and biogeochemical processes. Adapted to cold and oligotrophic conditions, profunda quagga mussels thrive on the soft substrate of deeper depths. At a 55 m site (10,000 mussels m-2) offshore from Milwaukee, WI, profunda mussel biomass (g m-2) was 1/3 of biomass (g m-2) measured at a 10 m comparison site (5,000 mussels m-2). Higher densities but less biomass is due to profunda mussels having less tissue for a given length and the population per m2 comprising of mostly small mussels ( …

Plankton Trophic Structure Within Lake Michigan As Revealed By Stable Carbon And Nitrogen Isotopes, Zachery G. Driscoll

Theses and Dissertations

Zooplankton represent a critical component of aquatic food webs in that they transfer energy from primary producers to higher trophic positions. However, their small size makes the application of traditional trophic ecology techniques difficult. Fortunately, novel techniques have been developed that can be used to elucidate feeding information between zooplankton species. I used the analysis of stable carbon and nitrogen isotope ratios to estimate the trophic structure of Lake Michigan's zooplankton community. The major zooplankton species, three size classes of seston, and seston from specific water column depths were collected in 2011 and 2012 for stable isotope analysis. Trophic position …

"Mining" For A Reference Condition In Southern West Virginia Streams, Matthew Rouch

Theses and Dissertations

Quarterly samples were used to estimate assemblage-level (all species combined) fish production within three minimally-impacted, southern West Virginia streams. The total annual fish production estimate was highest in Slaunch Fork (37.52 kg∙ha^-1∙y^-1), a tributary of the Tug Fork River, and lowest in Cabin Creek (10.59 kg∙ha^-1∙y^-1), a Guyandotte River tributary. Creek Chub Semotilus atromaculatus, Mottled Sculpin Cottus bairdii and Blacknose Dace Rhinicthys atratulus were the most abundant species among sites, accounting for >90% of all sampled individuals. Reference condition criteria were also selected and metrics calculated for each of the three …

Nearshore Benthic Oxygen Dynamics In Lake Michigan, Emily H. Tyner

Theses and Dissertations

The intense colonization of the Laurentian Great Lakes by dreissenid mussels has profoundly changed ecosystem processes, particularly benthic oxygen dynamics. Dissolved oxygen concentrations in mussel beds, sloughed Cladophora mats, and sediment indicate that hypoxia forms and disappears in some substrata (ephemeral Cladophora mats), while occurring consistently in others (depositional areas of sloughed Cladophora). Dissolved organic carbon concentrations are high (mean: 143 ± ± 28 ppm) in depositional Cladophora mats but lower (˂ 10 ppm) in most other environments. Field sampling and laboratory experiments suggest that under conditions of low water velocity and thick Cladophora cover, hypoxia may develop atop …

Freshwater Phytoplankton Populations Detected Using High Pressure Liquid Chromatography (Hplc) Of Taxon-Specific Pigments, Lauren Jeanne Simmons

Theses and Dissertations

Phytoplankton are key primary producers in aquatic ecosystems, and the principle food source for primary consumers. Individual phytoplankton species respond to different physical, chemical and biological parameters, so monitoring taxonomic composition of the phytoplankton community is a means to monitor changes in environmental conditions. Phytoplankton community changes have frequently been monitored by estimating biomass (using chlorophyll a, measured fluorometrically), and taxonomic data obtained from cell counts. While such methods are useful, they are time-consuming. I hypothesized that high pressure liquid chromatography (HPLC) methods, which have been frequently used in marine systems, would allow separation and identification of key pigments. …

A System Dynamics Investigation Of Genetic Drift And Translocation In The Red-Cockaded Woodpecker Metapopulation, Jason E. Yates

Theses and Dissertations

The red-cockaded woodpecker (Picoides borealis) is classified under the Endangered Species Act of 1973 as an endangered species As such, the red-cockaded woodpecker (RCW) is afforded strict protection in an effort to return the RCW population to a self-sustainable level. Endemic to southeastern United States mature pine forests, the presence of the RCW impacts the operations of many Department of Defense (DoD) installations. A particular challenge in sustaining what are often small populations of RCW at these locations is the loss of genetic variation due to genetic drift. The optimal method for mitigating such loss is through the artificial immigration, …

Effects On The Red-Cockaded Woodpecker From Various Spatial And Temporal Applications Of Management Practices, Chad F. Schroeder

Theses and Dissertations

The Red-Cockaded Woodpecker (RCW) is an endangered species endemic to southeastern pine forests in the United States. RCWs are cooperative breeding birds that live together in clusters of old-growth pine trees in which they construct their nesting cavities. The cavities are constructed in living pines, which are predominantly longleaf pines. RCWs also forage upon older pines, preferably longleaf pine. The Endangered Species Act, along with other DoD regulations, requires DoD installations to protect the RCWs and restore their habitat. A popular management practice converts off-site (non-native) pines back to a region's indigenous pines. Conversion provides the best long term RCW …