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Articles 241 - 243 of 243
Full-Text Articles in Medicine and Health Sciences
Biomart: A Research Data Management Tool For The Biomedical Sciences, Rolando Garcia-Milian
Biomart: A Research Data Management Tool For The Biomedical Sciences, Rolando Garcia-Milian
Rolando Garcia-Milian
BioMart (www.biomart.org) is a freely available open source system that allows complex queries across more than 40 different biological data sets through a single web interface. Originally developed for the Ensembl genome browser, BioMart has been integrated into widely used software such as Galaxy, BioConductor, and Cytoskape. The BioMart interface is also used by data portals such as Ensembl, Wormbase, Gramene, and Reactome. In this workshop we will use simple examples to demonstrate how to navigate, build queries, and save and export the results on BioMart such as: - how to retrieve the Ensembl mouse genes and genomic locations in …
Introduction To Genome Browsers, Rolando Garcia-Milian
Introduction To Genome Browsers, Rolando Garcia-Milian
Rolando Garcia-Milian
In this workshop we will learn how to navigate the genome browsers from NCBI's Genome Workbench, UCSC Genome Browser, and Ensembl. These browsers are valuable tools when identifying, localizing genes, and looking at their information in the genomic context. By using concrete examples, it will be shown how to locate a human gene, download a gene sequence and its upstream sequence, locate Single Nucleotide Polymorphisms (SNPs) and conserved regions, and use the browsers to download results in a batch.
Validation Of A Previous Day Recall For Measuring The Location And Purpose Of Active And Sedentary Behaviors Compared To Direct Observation, Sarah Kozey Keadle, Kate Lyden, Amanda Hickey, Evan L. Ray, Jay H. Fowke, Patty S. Freedson, Charles E. Matthews
Validation Of A Previous Day Recall For Measuring The Location And Purpose Of Active And Sedentary Behaviors Compared To Direct Observation, Sarah Kozey Keadle, Kate Lyden, Amanda Hickey, Evan L. Ray, Jay H. Fowke, Patty S. Freedson, Charles E. Matthews
Patty S. Freedson
Purpose Gathering contextual information (i.e., location and purpose) about active and sedentary behaviors is an advantage of self-report tools such as previous day recalls (PDR). However, the validity of PDR’s for measuring context has not been empirically tested. The purpose of this paper was to compare PDR estimates of location and purpose to direct observation (DO). Methods Fifteen adult (18–75 y) and 15 adolescent (12–17 y) participants were directly observed during at least one segment of the day (i.e., morning, afternoon or evening). Participants completed their normal daily routine while trained observers recorded the location (i.e., home, community, work/school), purpose …