Plant Sciences Commons^™

Tree Biomass – A Fragile Carbon Storage In Old-Growth Birch And Aspen Stands In Hemiboreal Latvia, Laura Ķēniņa, Didzis Elferts, Ieva Jaunslaviete, Endijs Bāders, Guntars Šņepsts, Āris Jansons

Aspen Bibliography

Birch (Betula pendula Roth, Betula pubescens Ehrh.) and European aspen (Populus tremula L.) stands dominate the deciduous forests of Northern Europe. Due to increasing forest protections, more deciduous stands will reach the old-growth stage. Thus, data on the carbon storage potential in such areas are essential. We aimed to establish a benchmark for carbon stocks of the main carbon pools in old-growth deciduous hemiboreal stands. Carbon pools were calculated from measurements in forty old-growth (104–148 years-old) deciduous stands in forests on fertile mineral soil. The carbon stock in these stands is distributed across tree biomass (~ 60%), mineral soil (~ …

Temporal Changes In The Nutrient Content Of Cattle Dung In The Nebraska Sandhills Ecosystem, Amanda Shine, Martha Mamo, Gandura O. Abagandura, Walter Schacht, Jerry Volesky

Department of Agronomy and Horticulture: Faculty Publications

Dung excreted by cattle composes a significant portion of the nutrient inputs in a grazed ecosystem and can have wide-ranging effects on soil properties and vegetation. However, little research has been conducted on the nutrient dynamics of excreted dung in situ that has not been disturbed prior to field sampling. In this study, we analyzed 294 dung pats (1–24 days old) collected from a Nebraska Sandhills meadow to determine water-extractable organic carbon (WEOC), water-extractable nitrogen (WEN), water-extractable phosphorus (WEP), and percent dry matter (DM) changes over time. In addition, we investigated if sample handling - frozen storage – and the …

Biochar: Properties And Potential Benefits For Agricultural Soil In Rwanda, Andromede Uwase

Honors Theses

Physical and chemical soil degradation is becoming a major challenge for agricultural productivity in Rwanda, which is the most important part of the country’s economy. The wide spreading soil degradation in Rwanda is mainly a result of naturally poor soils coupled with unsustainable soil management leading to, for example, accelerated soil erosion, acidification, nutrient loss, compaction, and to decreasing yields. Biochar, as an end product of pyrolysis of biomass in the absence of oxygen, has been proposed as a soil amendment in remediation strategies because of its positive effects on soil productivity relevant parameters such as soil pH, structure, nutrient …

A Method For Visualizing Water Flow Through Modified Root Zones, Dallas M. Williams

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

As the number of impervious surfaces in urban environments increases, the ability of modified root zones to infiltrate water is becoming more important. Current methods of tracing water flow through soil profiles include excavating large pits in situ or analyzing soil cores in the laboratory with computed tomography or magnetic resonance imaging. While useful, these methods may not be suitable for urban settings or practical in every laboratory. We propose a new method that is less invasive, does not require extensive technical equipment and can reliably trace water movement through the soil profile in order to calculate flow rate based …

Does Integrating Crops With Livestock Production Impact Soil Properties And Crop Production?, Lindsey Anderson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Re-integrating crop and livestock production through cover crop (CC) and corn residue grazing could efficiently utilize resources and ensure profitability while improving environmental quality, but how this integration affects soils and crops is not well understood. We conducted two studies to address this. In the first study, we evaluated the impact of cattle (1.3-3.7 head ha^-1) grazing an oat (Avena sativa L.) CC on soil and crop yields in two adjacent irrigated no-till corn (Zea mays L.)-soybean (Glycine max L.) fields on silt loam soils in eastern Nebraska. Field I was grazed twice, while Field …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2020, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Shotgun Metagenomic Sequencing Data Of Sunflower Rhizosphere Microbial Community In South Africa, Olubukola Oluranti Babalola, Temitayo Tosin Alawiye, Carlos M. Rodriguez Lopez, Ayansina Segun Ayangbenro

Horticulture Faculty Publications

This dataset presents shotgun metagenomic sequencing of sunflower rhizosphere microbiome in Bloemhof, South Africa. Data were collected to decipher the structure and function in the sunflower microbial community. Illumina HiSeq platform using next generation sequencing of the DNA was carried out. The metagenome comprised 8,991,566 sequences totaling 1,607,022,279 bp size and 66% GC content. The metagenome was deposited into the NCBI database and can be accessed with the SRA accession number SRR10418054. An online metagenome server (MG RAST) using the subsystem database revealed bacteria had the highest taxonomical representation with 98.47%, eukaryote at 1.23%, and archaea at 0.20%. The most …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2019, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Remediating Soil For Successful Vegetation Establishment Along Nebraska Highways, Shad Mills, Martha Mamo, Walt Schacht, Humberto Blanco-Canqui

Nebraska Department of Transportation: Research Reports

Vegetation along roadsides is important to prevent soil erosion, provide habitat, and filter water running off the road. Vegetation close to the pavement along highways in Nebraska does not readily establish and persist. It is thought that the sodium and bulk density are the driving factors behind the lack of vegetation. After a construction project the shoulder is seeded into the compacted soil, and during winter salts can accumulate in the soil because of deicing agents being used. The purpose of our study was to determine if the sodium and bulk density are the driving factors of the vegetation cover. …

Soil Net Nitrogen Mineralisation Across Global Grasslands, A. C. Risch, S. Zimmerman, R. Ochoa-Hueso, M. Schütz, B. Frey, J. L. Firn, P. A. Fay, F. Hagedorn, E. T. Borer, E. W. Seabloom, W. S. Harpole, J. M. H. Knops, Rebecca L. Mcculley, A. A. D. Broadbent, C. J. Stevens, M. L. Silveria, P. B. Adler, S. Báez, L. A. Biederman, J. M. Blair

Plant and Soil Sciences Faculty Publications

Soil nitrogen mineralisation (N_min), the conversion of organic into inorganic N, is important for productivity and nutrient cycling. The balance between mineralisation and immobilisation (net N_min) varies with soil properties and climate. However, because most global-scale assessments of net N_min are laboratory-based, its regulation under field-conditions and implications for real-world soil functioning remain uncertain. Here, we explore the drivers of realised (field) and potential (laboratory) soil net N_min across 30 grasslands worldwide. We find that realised N_min is largely explained by temperature of the wettest quarter, microbial biomass, clay content and bulk density. …

Green Club After School Program Curriculum, Megan Willburn

Honors Expanded Learning Clubs

Green Club is an after school program which encourages students to develop environmental empathy, passions for environmental sustainability, and knowledge about the workings of environmental systems.

Seedling Emergence Patterns Of Six Restoration Species In Soils From Two Big Sagebrush Plant Communities, Lacey E. Wilder, Kari E. Veblen, Eugene W. Schupp, Thomas A. Monaco

Ecology Center Publications

Despite the critical need to improve degraded herbaceous understory conditions in many semiarid ecosystems, the influence of soil properties on seedling emergence of species seeded in shrubland plant communities is largely unexplored. We evaluated emergence patterns of 6 restoration species in soils from wyomingensis (i.e., Wyoming big sagebrush, Artemisia tridentata ssp. wyomingensis [Beetle & A. Young] S.L. Welsh) and vaseyana (i.e., mountain big sagebrush, A. t. ssp. vaseyana [Rydb.] Beetle) plant communities that differed in soil texture, soil organic matter content, and soil water-holding capacity. We conducted 2 separate experiments that regularly wetted soils to standardized soil water potentials (i.e., …

Statistical And Machine Learning Methods Evaluated For Incorporating Soil And Weather Into Corn Nitrogen Recommendations, Curtis J. Ransom, Newell R. Kitchen, James J. Camberato, Paul R. Carter, Richard B. Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A. M. Laboski, D. Brenton Myers, Emerson D. Nafziger, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen (N) fertilizer recommendation tools could be improved for estimating corn (Zea mays L.) N needs by incorporating site-specific soil and weather information. However, an evaluation of analytical methods is needed to determine the success of incorporating this information. The objectives of this research were to evaluate statistical and machine learning (ML) algorithms for utilizing soil and weather information for improving corn N recommendation tools. Eight algorithms [stepwise, ridge regression, least absolute shrinkage and selection operator (Lasso), elastic net regression, principal component regression (PCR), partial least squares regression (PLSR), decision tree, and random forest] were evaluated using a dataset …

Tetracycline And Sulfonamide Antibiotic Resistance Genes In Soils From Nebraska Organic Farming Operations, Marylynn Cadena, Lisa M. Durso, Daniel N. Miller, Heidi M. Waldrip, B. L. Castleberry, Rhae A. Drijber, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

There is widespread agreement that agricultural antibiotic resistance should be reduced, however, it is unclear from the available literature what an appropriate target for reduction would be. Organic farms provide a unique opportunity to disentangle questions of agricultural antibiotic drug use from questions of antibiotic resistance in the soil. In this study, soil was collected from 12 certified organic farms in Nebraska, evaluated for the presence of tetracycline and sulfonamide resistance genes (n = 15 targets), and correlated to soil physical, chemical, and biological parameters. Tetracycline and sulfonamide antibiotic resistance genes (ARGs) were found in soils from all 12 …

Isolation And Analysis Of Microbial Communities In Soil, Rhizosphere, And Roots In Perennial Grass Experiments, Morgan R. Mcpherson, Peng Wang, Robert B. Mitchell, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Plant and soil microbiome studies are becoming increasingly important for understanding the roles microorganisms play in agricultural productivity. The purpose of this manuscript is to provide detail on how to rapidly sample soil, rhizosphere, and endosphere of replicated field trials and analyze changes that may occur in the microbial communities due to sample type, treatment, and plant genotype. The experiment used to demonstrate these methods consists of replicated field plots containing two, pure, warm-season grasses (Panicum virgatum and Andropogon gerardii) and a low-diversity grass mixture (A. gerardii, Sorghastrum nutans, and Bouteloua curtipendula). Briefly, plants …

Maize Genomes To Fields: 2014 And 2015 Field Season Genotype, Phenotype, Environment, And Inbred Ear Image Datasets, Naser Alkhalifah, Darwin A. Campbell, Celeste M. Falcon, Jack M. Gardiner, Nathan D. Miller, Maria Cinta Romay, Ramona Walls, Renee Walton, Cheng-Ting Yeh, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice Hirsch, James B. Holland, David Hooker, Shawn Kaeppler, Joseph Knoll, Nick Lauter, Elizabeth C. Lee, Aaron Lorenz, Jonathan P. Lynch, Stephen P. Moose, Seth C. Murray, Rebecca Nelson, Torbert Rocheford, Oscar Rodriguez, James C. Schnable, Brian Scully, Margaret Smith, Nathan Springer, Peter Thomison, Mitchell Tuinstra, Randall J. Wisser, Wenwei Xu, David Ertl, Patrick S. Schnable, Natalia De Leon, Edgar P. Spalding, Jode Edwards, Carolyn J. Lawrence-Dill

Department of Agronomy and Horticulture: Faculty Publications

Objectives: Crop improvement relies on analysis of phenotypic, genotypic, and environmental data. Given large, well-integrated, multi-year datasets, diverse queries can be made: Which lines perform best in hot, dry environments? Which alleles of specific genes are required for optimal performance in each environment? Such datasets also can be leveraged to predict cultivar performance, even in uncharacterized environments. The maize Genomes to Fields (G2F) Initiative is a multi-institutional organization of scientists working to generate and analyze such datasets from existing, publicly available inbred lines and hybrids. G2F’s genotype by environment project has released 2014 and 2015 datasets to the public, with …

Assessing Explanatory Factors For Variation In On-Farm Irrigation In Us Maize-Soybean Systems, Katherine E.B. Gibson, Haishun S. Yang, Trenton E. Franz, Dean E. Eisenhauer, John B. Gates, Paolo Nasta, Bhupinder S. Farmaha, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Irrigation exhibits large variation across producer fields, even within same region and year. A knowledge gap exists relative to factors that explain this variation, in part due to lack of availability of high-quality irrigation data from multiple field-years. This study assessed sources of variation in irrigation using a large database collected during 9 years (2005–2013) from ca. 1400 maize and soybean producer fields in Nebraska, central USA (total of 12,750 field-year observations). The study area is representative of ca. 4.5 million ha of irrigated land sown with maize and soybean. Influence of biophysical (weather, soil, and crop type) and behavioral …

Managing Nitrous Oxide Emissions In Agricultural Fields, Mark S. Coyne, Wei Ren

Plant and Soil Sciences Research Report

Agriculture is a major contributor to atmospheric nitrous oxide (N₂O) (Smith et al., 2014; Tian et al., 2015). Unfortunately, nitrous oxide destroys stratospheric ozone (O₃) which protects us from ultraviolet radiation (Cicerone, 1989) and it increases ground level O_3, whichis an air pollutant threatening human health and food production. Nitrous oxide is also 298 times more potent than an equivalent amount of carbon dioxide (CO₂) in terms of trapping and absorbing reflected solar radiation (Forster et al., 2007). Basic chemistry and physics assure us that increased levels of N₂O in the …

Effects Of Habitat Restoration On Soil Retention On Santa Rosa Island, Michael Perez, Kathryn Mceachern, Ken Niessen

STAR Program Research Presentations

Ranching began on Santa Rosa Island in the 1840’s, consequently introducing nonnative megafauna that put novel selective grazing pressures on endemic plant species. Their movement patterns also altered substrate integrity as the land became denuded of any stabilizing vegetation. Dense groves of island oak (Q. tomentella) are known to aid in sediment deposition and retention. The groves also function to collect water during periods of intense fog common to the island. This experiment sought to determine whether sediment is being lost or deposited on a ridge in the middle of the island containing a grove of Q. tomentella …

Linking Nutrient Transport To Soil Physical Processes During Freeze/Thaw Events To Promote Wintertime Manure Management, Nutrient Use Efficiency, And Surface Water Quality., Melanie N. Stock, Francisco J. Arriaga, Peter A. Vadas, Laura Ward Good, K. G. Karthikeyan

Plants, Soils, and Climate Faculty Publications

The application of dairy manure to the landscape during winter is a longstanding practice for farms in the Midwestern United States and other temperate regions. Practical motivations behind winter spreading include affordability, availability of time, and the reduced risk of compaction from farm equipment on frozen soils. Wintertime manure applications, however, coincide with environmental conditions that are prone to runoff and accelerate nutrient losses from agricultural fields. Understanding the nutrient dynamics in response to winter-applied manure is especially important to Wisconsin, a leading state in dairy production, where up to 75% of annual runoff volumes occur on frozen and thawing …

Identifying And Addressing Soil Property Issues Affecting Roadside Vegetation Establishment, Xu Li, Martha Mamo, Walter H. Schacht, Tala Awada, Humberto Blanco-Canqui

Nebraska Department of Transportation: Research Reports

Attaining adequate vegetation cover along highways is important for NDOR to comply with EPA’s stormwater regulations. However, low plant cover is a common problem on shoulders (first 16 feet off the pavement) of many highways in Nebraska. The ultimate goal of this study is to identify cost-effective engineering solutions that assure adequate seed beds (i.e., soil conditions) for establishment of selected seeding mixtures. The objectives of this study are to (1) characterize the soil properties along roadsides where vegetation stands have not developed well, and (2) verify the effects of select soil property parameters on plant germination and establishment.

Sampling …

07. The Effects Of Seed Mix Diversity On Soil Conditions And Nesting Of Bees In Prairie Restorations, Nicholas Anderson, Alexandrea Harmon-Threatt

North American Prairie Conference Proceedings

With the goal of conserving native bees, current recommendations for improving habitats include increasing available floral resources by planting diverse seed mixes. However, these recommendations only account for the nutritional needs of bees while the availability of equally important nesting resources is often ignored. Here we used a novel system to investigate the effects of seed mix diversity on abiotic factors previously associated with nest sites of ground-nesting bees—available bare ground and soil temperature, moisture, and compaction—and on the occurrence of nests. We used standard bee-collecting techniques and a newer method using soil emergence tents (E-tents) to assess how seed …

Comparison Of Pea Seed Germination Due To Manipulation Of Soil Conditions, Ariel M. Kershner

Faculty Curated Undergraduate Works

This experiment was done with the intent to understand optimal soil conditions for pea seed germination. We investigated this using three soil conditions – 100% potting soil, 50% potting soil/50% sand, and 100% sand. Seemingly healthy pea seeds were planted and observed over five weeks. We measured both the total number of sprouts per week and the combined weight of the plants and seeds per condition before planting and after uprooting. We expected to find that the 100% potting soil condition would germinate the best, resulting in the most sprouts and heaviest weight of the condition’s seeds and plants. This …

Evaluation Of Concrete Grinding Residue (Cgr) Slurry Application On Vegetation And Soil Responses Along Nebraska State Highway 31, Martha Mamo, Dennis L. Mccallister, Walter H. Schacht

Nebraska Department of Transportation: Research Reports

No abstract provided.

Soil Analysis Information Sheet, Utah State University

All Current Publications

No abstract provided.

Inter- And Intra-Specific Interactions In Germination And Seedling Establishment Of Cheatgrass And Russian Wildrye, Erin K. Espeland

The Prairie Naturalist

Cheatgrass (Bromus tectorum) is an invasive species in the arid and semi-arid west of the USA, and is weedy in disturbed prairie landscapes. Perennial Russian wildrye (Psathyrostachys juncea) limits population growth of cheatgrass, but the mechanism is unclear. I conducted glasshouse and greenhouse experiments to test if intra- and interspecific competitive interactions of seeds and seedlings of cheatgrass and Russian wildrye were different across a geographic soil gradient with different cultivation legacies in eastern Montana, USA. Seed-seed interactions occurred in both species. Cheatgrass and Russian wildrye inhibited one another’s emergence in one edaphic condition in one experiment. Cheatgrass growth was …

A Response Regulator From A Soil Metagenome Enhances Resistance To The Β-Lactam Antibiotic Carbenicillin In Escherichia Coli, Heather K. Allen, Ran An, Jo Handelsman, Luke A. Moe

Plant and Soil Sciences Faculty Publications

Functional metagenomic analysis of soil metagenomes is a method for uncovering as-yet unidentified mechanisms for antibiotic resistance. Here we report an unconventional mode by which a response regulator derived from a soil metagenome confers resistance to the β-lactam antibiotic carbenicillin in Escherichia coli. A recombinant clone (βlr16) harboring a 5,169 bp DNA insert was selected from a metagenomic library previously constructed from a remote Alaskan soil. The βlr16 clone conferred specific resistance to carbenicillin, with limited increases in resistance to other tested antibiotics, including other β-lactams (penicillins and cephalosporins), rifampin, ciprofloxacin, erythromycin, chloramphenicol, nalidixic acid, fusidic acid, and gentamicin. Resistance …

Changes Of Soil Biogeochemistry Under Native And Exotic Plants Species, Yujie Hua

FIU Electronic Theses and Dissertations

Invasive plant species are major threats to the biodiversity and ecosystem stability. The purpose of this study is to understand the impacts of invasive plants on soil nutrient cycling and ecological functions. Soil samples were collected from rhizosphere and non-rhizosphere of both native and exotic plants from three genera, Lantana, Ficus and Schinus, at Tree Tops Park in South Florida, USA. Experimental results showed that the cultivable bacterial population in the soil under Brazilian pepper (invasive Schinus) was approximately ten times greater than all other plants. Also, Brazilian pepper lived under conditions of significantly lower available phosphorus …

Fragipan Horizon Fragmentation In Slaking Experiments With Amendment Materials And Ryegrass Root Tissue Extracts, Anastasios D. Karathanasis, Lloyd W. Murdock, Christopher J. Matocha, John H. Grove, Yvonne L. Thompson

Plant and Soil Sciences Faculty Publications

Slaking experiments were conducted of fragipan clods immersed in solutions of poultry manure, aerobically digested biosolid waste (ADB), fluidized bed combustion byproduct (FBC), D-H₂O, CaCO₃, NaF, Na-hexa-metaphosphate, and ryegrass root biomass. The fragipan clods were sampled from the Btx horizon of an Oxyaquic Fragiudalf in Kentucky. Wet sieving aggregate analysis showed significantly better fragmentation in the NaF, Na-hexa-metaphosphate, and ryegrass root solutions with a mean weight diameter range of 15.5-18.8 mm compared to the 44.2-47.9 mm of the poultry manure, ADB, and FBC treatments. Dissolved Si, Al, Fe, and Mn levels released in solution were ambiguous. …

Association Of Soil Conditions And Grass Species With Variable Cover Of Leafy Spurge, Terence P. Mcgonigle, Jeremy L. Timmer

The Prairie Naturalist

Variation in soil conditions and grass cover was assessed across a range of leafy spurge (Euphorbia esula L.) cover values on a sandy rangeland in Manitoba, Canada. Soil conditions varied by site but not in relation to cover of leafy spurge. We observed a significant negative relationship between total grass cover and increasing cover of leafy spurge. Only porcupine grass (Hesperostipa spartea [Trin.] Barkworth) had a negative relationship with leafy spurge, falling from high cover at low weed occurrence to only trace levels at the highest leafy spurge abundance. Neither prairie Junegrass (Koeleria macrantha [Ledeb.] Schult.), rough …