Life Sciences Commons^™

Functional Investigations Of Proteins And Enzymatic Toxins From Full-Length-Enriched Cdna Of Timber Rattlesnake (Crotalus Horridus), Joshua Osula

Theses

Snake Venom is a highly modified form of saliva, contains hundreds of zootoxins, necrotoxins, cytotoxins, neurotoxins, and mytotoxins, all of which are primarily made up of mostly proteins, polypeptides, and other components such as enzymes, lipids, and carbohydrates. Although snake venom is known for its harmful effects, it has also had a positive impact in scientific discovery and medicine. Some toxins from snakes function to inhibit pain, and this means they can be very effective analgesics. For instance, crotalphine is considered a 14-amino-acid-peptide that has a disulfide bond and shows analgesic properties through TRPA1 desensitization. This …

Algal Wrack Community Composition And Succession On A Sandy Beach In San Diego, Ca, Marisol Palomares

Theses

Sandy beaches are high-energy impact zones that produce little to no organic material. Much of the organic matter on beaches is washed up on shore in the form of algal wrack, providing a vital source of nutrients, food, and habitat for a variety of organisms on the sandy beach. Over time wrack will decay and decompose, releasing nutrients including nitrogen and phosphorus, which are consumed by benthic microalgae and bacteria. The type of wrack and geomorphology of the beach environments affect decomposition, which in turn supports a variety of different wrack associated macrofaunal communities. Different species of algal wrack will …

Trilepisium (Moraceae): Four New Species From Madagascar, Shawn Kelley

Theses

Trilepisium is a genus of tree with two member species: T. madagascariense and T. gymnandrum. This genus shows diversity in habit and morphology greatly exceeding that expected of a genus with two member species. Concerted collection efforts since the last revision have suggested there are several unrecognized species within Trilepisium and a revision is needed. Chapter one of this thesis details the history of this taxanomically challenging genus and presents the results of our study of 600 Malagasy herbarium specimens. Trilepisium is more adequately circumscribed as containing 17 species, 11 of which are new to science. Chapter two contains …

New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger

Theses

Background: Much of the recent success in protein structure prediction has been a result of accurate protein contact prediction--a binary classification problem. Dozens of methods, built from various types of machine learning and deep learning algorithms, have been published over the last two decades for predicting contacts. Recently, many groups, including Google DeepMind, have demonstrated that reformulating the problem as a multi-class classification problem is a more promising direction to pursue. As an alternative approach, we recently proposed real-valued distance predictions, formulating the problem as a regression problem. The nuances of protein 3D structures make this formulation appropriate, allowing predictions …

Hyperspectral Properties Of Date Palm Trees (Phoenix Dactylifera L.), Mohamed Ali Saeed Ahmed Al Abdouli

Theses

The goal of this study is to classify the Date Palm varieties based on hyperspectral signature technology since it is difficult to identify the Date Palm cultivars without fruits. It will also help to obtain the hyperspectral signature for different types of date palm trees. Moreover, it also assists to determine the wavelength fingerprint of each cultivar and to recommend the best classification protocol differentiating among different cultivars based on spectral signature. Utilizing the Hyperspectral imaging technology precisely on the leaves of different Date Palm cultivars, thus facilitating identification of date palm cultivars without the fruits and make the spatial …

Prevalence Of Brca1 And Brca2 Mutations Among Breast And Ovarian Cancer Patients In Northern Emirates, Zahra Ahmed Mohammed Saeed

Theses

Breast Cancer (BC) is the most common cancer and the second most cause of death among women. Mutations in BRCA1 and BRCA2 genes confer high susceptibility to both breast and ovarian cancer. However, data on the prevalence of the BRCA1/2 mutations among breast and ovarian cancer patients is limited. The genetic component of breast cancer in the UAE is largely unknown and no study has evaluated the BRCA mutations status in breast and ovarian cancer patients in the UAE population. This retrospective study aimed to establish mutation frequencies of the BRCA genes in breast and ovarian cancer patients from the …

The Effect Of Phytoplankton Properties On The Ingestion Of Marine Snow By Calanus Pacificus, Grace Cawley

Theses

The aggregation of phytoplankton into marine snow provides a mechanism by which smaller particles can coagulate to form larger particles, which can be consumed at various depths or readily transported to the deep ocean and sequestered from the atmosphere on time scales of a thousand years or more. Zooplankton interacting with these large carbon-rich aggregates can obtain nutrition in environments where the phytoplankton size spectrum is small and not directly available, enhancing the possibility of obtaining adequate nutrition in environments dominated by small cells. In addition, interactions between zooplankton and marine snow can result in fragmentation, thus affecting the particle …

Comparison Of Longitudinal Changes In Resting State Functional Magnetic Resonance Imaging Between Alzheimer’S And Healthy Controls, Berk Can Yilmaz

Theses

Resting State Functional Magnetic Resonance Imaging (rs-fMRI) is a technique that is widely used for analyzing brain function using different approaches and methods. This study involves rs-fMRI analysis of Blood Oxygenation Level Dependent (BOLD) signals acquired from Alzheimer’s disease (AD) Patients and Healthy Controls (HC). Each subject in the study had both functional and anatomical images with at least one rs-fMRI scan with their Anatomical (T1) scans. Previous rs-fMRI studies have demonstrated that AD shows differences in Amplitude of Low Frequency (<0.1 Hz) Fluctuations (ALFF), and Regional Homogeneity (ReHo) measures according to HCs.

The aim of the study is to investigate individual and group level differences using ReHo and mALFF related …

Influences Of Salvinorin A And Sex Differences On Depressive- And Anxiety-Like Behaviors In A Chronic Mild Stress Paradigm, Sarah Mitchell

Theses

Kappa opioid receptors are colocalized with dopamine receptors and are frequently associated with depression, anxiety, stress, and drug use and abuse. KOR antagonism has widely been considered anti-depressive and anxiolytic in animal models while agonism is pro-depressive and anxiogenic. However, recent findings suggest that SalvA, a natural kappa agonist derived from a plant in the mint family, can reduce depressive- and anxiety-like behavior in rats. The current study investigated the effects of chronic mild stress on behavior, attenuation by SalvA, and sex differences. 52 Long-Evans rats, 26 males and 26 females, were exposed to six weeks of CMS. Animals received …

Nearshore Vertical Distribution Of Barnacle Cyprids: Temporal Patterns And Hydrographic Variability, Gabriela Yamhure

Theses

Most benthic organisms living in the intertidal zone have planktonic larvae that reside temporarily in the water column before settling in their adult habitats. Larvae aggregate in offshore larval pools, and transport horizontally and vertically in the water to remain in the nearshore and during their pelagic life. While some horizontal transport of larvae can be attributed to advection, behavioral responses, like vertical swimming and buoyancy control, allow larvae to position themselves at depths where flow direction can be exploited. Thus, knowledge on how vertical larval distribution relates to physical processes can be fundamental to better understand larval transport. These …

Prevalence, Antibiotic-Resistance And Growth Profile Of Vibrio Spp., Isolated From Imported Shellfish In The Local Markets, Hind Obaid Mohammed Al Rumaithi

Theses

Seafood-related human illness caused by Vibrio species is a major problem. Seafood is prone to contamination by pathogenic Vibrio bacteria especially, Vibrio mimicus, Vibrio parahaemolyticus, and Vibrio vulnificus. The study on the prevalence of this microorganism in seafood of the United Arab Emirates is vital due to the cultural background of the Emiratis as a coastal heritage. A study was conducted to assess the prevalence of Vibrio spp. in imported shellfish from local markets and to identify the Vibrio spp. examine the antimicrobial resistance and profile growth conditions of the isolated Vibrio. In the present study, …

Sinorhizobium Meliloti Changes Motility Phenotypes In The Presence Of Serum, Eris K. Bisal

Theses

Sinorhizobium meliloti is a nitrogen-fixing flagellated soil bacterium that engages in a mutual symbiotic relationship with the legume Medicago sativa. Using its flagella, S. meliloti is chemotactic in response to varying environmental cues thereby directed to a target, which is typically the root hairs of M. sativa. Lu et al, 2012 suggested that a signal from the plant can switch S. meliloti from a free-living flagellated microbe to a host-invading non-flagellated microbe, although this signal has not been identified. This switch is thought to occur inside curled root hairs of the plant, and after becoming non-flagellated, S. …

Bioenergetic Modulation Of Retinal Progenitor Cell Glycolysis To Drive Invasion For Photoreceptor Replacement, Jei Espinal

Theses

Given the limited regenerative capacity of the mammalian retina, cell-replacement strategies are necessary. To replace photoreceptors lost to disease or trauma and restore visual function, laboratories throughout the world are researching photoreceptors replacement strategies using subretinal transplantation of retinal progenitor cells (RPCs). A major obstacle to the advancement of photoreceptor cell-replacement strategies includes low rates of invasion and integration of transplanted cells into the host retina. Currently, there is a limited understanding of how RPC glycolysis may facilitate invasion. To further understand RPC glycolysis-driven invasion, the current investigation involved the bioenergetic modulation RPCs for glycolysis analysis and invasion modeling. The …

The Use Of Mycobacteriophages As A Novel Therapeutic Option To Control And Treat Johne's Disease, Gillian Catherine Crowley

Theses

The incidences of Johne’s disease (JD) in farms worldwide have increased significantly over the last 80 years. The increase in JD is owing to the lack of diagnostic tests available and the long incubation period of the disease causing pathogen, Mycobacterium avium paratuberculosis (MAP). In addition, treatment of JD with antibiotics has proven difficult due to the emergence of antibiotic resistance MAP strains and the presence of the thick lipid rich mycobacterial cell wall. An alternative diagnostic and treatment method for JD involves the use of mycobacteriophages. As part of this research, individual mycobacteriophages (TM4) and a mycobacteriophage cocktail (LE1 …

Investigating The Synergistic Bioactive Effects Of Fruit, Vegetable And Protein Combinations In A Market-Ready Food Product For Young Adults, Jessica Eivers

Theses

Diets high in fruits and vegetables (FV), are widely recommended for their health-promoting properties. A low intake of FV among young adults, is associated with the risk of developing chronic diseases such as cardiovascular disease (CVD), hypertension, osteoporosis, obesity, type 2 diabetes, dental caries, hypercholesterolemia and certain cancers in later life. According to the World Health Organisation (WHO), despite an increasing awareness of the health benefits of FV, consumption by young adult’s remains below the recommended intake of 400g per day. This project aims to develop innovative, FV products for young adults with demonstrated bioactivity and high nutrient density. Initially, …

Group B Streptococcus: Molecular Epidemiology, Pathogenic Profiling And Control Strategies, Katherine Mary Hayes

Theses

Group B Streptococcus (GBS) are frequent colonisers of the gastrointestinal tract of healthy adults with worldwide rates of 18% colonisation; however, they are also opportunistic pathogens capable of causing invasive disease, particularly in neonates and adults with underlying conditions. Indeed, GBS is the leading cause of invasive neonatal disease worldwide with a global incidence of 0.49 per 1000 live births and GBS disease in adults is increasing globally, with estimated rates of 10.9 cases per 100,000 people. While GBS remain largely susceptible to penicillin, there have been reports of reduced beta-lactam susceptibility in certain countries and resistance to other antibiotic …

Effect Of Mptp On Α-Synuclein Spreading, Accumulation And Toxicity In Mice With Intrastriatal Innoculation Of Human Α-Synuclein Preformed Fibril, Madiha Mohieldin Merghani

Theses

Parkinson’s disease (PD) is the second most common progressive neurodegenerative disorder, characterized by abnormal accumulation of interneuronal inclusions of α-synuclein (α-syn) known as Lewy bodies (LBs) and Lewy neurites (LNs), and significant loss of dopamine neurons in the substantia nigra pars compacta (SNc) region of the brain. Recent evidence suggests that intrastriatal inoculation of α-syn Preformed Fibril (PFF) into mice induces PD-like LBs and LNs pathology formed by aggregated α-syn in anatomically interconnected brain regions which needs several months of incubation to develop the pathology. In the present study, we have evaluated the effect of different doses of 1-methyl, 4-phenyl, …