Life Sciences Commons^™

Comparison Of Methods For Detection Of Listeria On Wooden Shelves Used For Cheese Aging: Challenges Associated With Sampling Porous Surfaces, Gina Christine Frontino

Graduate College Dissertations and Theses

This thesis examined the efficacy of various sampling and detection methods used for environmental monitoring of Listeria species on wooden surfaces used for cheese aging. Government agencies including the Food and Drug Administration (FDA) and United States Department of Agriculture (USDA) recommend enrichment methods coupled with use of environmental sponges and swabs. Our study compared efficacy of sponge swabs manufactured by 3M™ and World Bioproducts. There is a lack of research validating the best performing swab type and enrichment method combination that is sensitive when used on rough, porous surfaces. The sensitivity of these environmental sampling tools and methods are …

Local Farmer Knowledge Of Adaptive Management On Diversified Vegetable And Berry Farms In The Northeastern Us, Alissa White

Graduate College Dissertations and Theses

Agricultural adaptation to climate change is notoriously context specific. Recently updated projections for the Northeastern US forecast increasingly severe and erratic precipitation events which pose significant risks to every sector of agricultural production in the region. Vegetable and berry farmers are among the most vulnerable to the risks of severe precipitation and drought due to the intensive soil and crop management strategies which characterize of this kind of production. To successfully adapt to a changing climate, these farmers need information which is tailored for the unique challenges of vegetable and berry production, framed at the level of climate impacts, and …

The Metabotropic Glutamate Receptor Mglur1 Regulates The Voltage-Gated Potassium Channel Kv1.2 Through Agonist-Dependent And Agonist-Independent Mechanisms, Sharath Chandra Madasu

Graduate College Dissertations and Theses

The voltage gated potassium channel Kv1.2 plays a key role in the central nervous system and mutations in Kv1.2 cause neurological disorders such as epilepsies and ataxias. In the cerebellum, regulation of Kv1.2 is coupled to learning and memory. We have previously shown that blocking Kv1.2 by infusing its specific inhibitor tityustoxin-kα (TsTX) into the lobulus simplex of the cerebellum facilitates eyeblink conditioning (EBC) and that EBC itself modulates Kv1.2 surface expression in cerebellar interneurons. The metabotropic glutamate receptor mGluR1 is required for EBC although the molecular mechanisms are not fully understood. Here we show that infusion of the mGluR1 …

Maintenance Of Mammary Epithelial Phenotype By Transcription Factor Runx1 Through Mitotic Gene Bookmarking, Joshua Rose

Graduate College Dissertations and Theses

Breast cancer arises from a series of acquired mutations that disrupt normal mammary epithelial homeostasis and create multi-potent cancer stem cells that can differentiate into clinically distinct breast cancer subtypes. Despite improved therapies and advances in early detection, breast cancer remains the leading diagnosed cancer in women.

A predominant mechanism initiating invasion and migration for a variety of cancers including breast, is epithelial-to-mesenchymal transition (EMT). EMT— a trans-differentiation process through which mammary epithelial cells acquire a more aggressive mesenchymal phenotype—is a regulated process during early mammary gland development and involves many transcription factors involved in cell lineage commitment, proliferation, and …

Male Weight Control: Crowdsourcing And An Intervention To Discover More, Tiffany Rounds

Graduate College Dissertations and Theses

Men and women have similar rates of obesity but the combined prevalence of overweight and obesity is higher among men. Men who are overweight are a high-risk group for many obesity-related chronic diseases, as they are more likely to carry excess weight in the abdomen, which is generally more harmful than weight stored in the lower body. Men are also less likely than women to perceive themselves as overweight, and thus are less likely to initiate weight loss through organized weight loss programs. On average, less than 27% of weight loss trial participants have been men.

Internet-based research is a …

An Environmental Approach To Food Safety Assessment Using Artisan Cheese And Fresh Produce As Model Systems, Marie Limoges

Graduate College Dissertations and Theses

This dissertation examined recently issued regulatory standards using cheese and produce as model systems. FDA's 2015 Domestic and Imported Cheese and Cheese Products Compliance Program Guidelines (CPG) E. coli standards on cheese safety, and the extent to which these standards affect domestic and imported cheese commerce, was assessed. Results from FDA's Domestic and Imported Cheese Compliance Program for samples collected between January 1, 2004 and December 31, 2006 were analyzed. Of 3,007 cheese samples tested for non-toxigenic E. coli, 76% (2,300) of samples exceeded 10/g, FDA's target for regulatory activity. In cheese samples containing E. coli levels of 10/g and …

Modeling Agricultural Outcomes In A Warmer, Wetter Vermont, Rachel Mason

Graduate College Dissertations and Theses

This thesis aimed to model agricultural outcomes that are important to Vermont dairy farms and their surrounding communities -- runoff, erosion, nitrogen and phosphorus losses, crop yields, and timeliness of farm operations -- under a set of possible future climates. The Agricultural Policy/Environmental eXtender (APEX) model was used for this work, and the models were calibrated using data from a project that measured most of these outcomes on a set of local farms. The model setup and calibration methodology is thoroughly documented and may be a useful starting point for others who are new to agricultural modeling.

Applied to two …

Effects Of Tumor-Related Factors And Chemotherapy On Skeletal Muscle And The Protective Effects Of Exercise, Blas Anselmo Guigni

Graduate College Dissertations and Theses

Cancer patients often experience cachexia, a form of weight loss consisting mostly of skeletal muscle wasting. Muscle wasting leads to physical disability, poor quality of life, reduced tolerance to treatments and shorter survival. Although the causes of cancer-related muscle atrophy have been studied for decades, the exact mechanisms through which cancer and its treatments promote muscle wasting have yet to be defined.

The overall aim of this dissertation is to examine the mediators of muscle wasting in cancer patients during their treatment and examine the modulatory role of exercise to maintain muscle size and function. To address these aims, we …

Protein Mass Spectrometry Aids In Chagas Vector Blood Meal Identification And Offers An Innovative Approach To Battling Vector-Borne Diseases, Judith Ina Keller

Graduate College Dissertations and Theses

Vector borne-diseases make up a significant portion of morbidity and mortality worldwide, being responsible for around 700,000 deaths annually according to the World Health Organization. Neglected, tropical diseases such as Chagas disease have a significant impact on people in Latin America, affecting millions, and especially those residing in rural areas. Chagas disease is the number one cause for heart disease in Latin America, and is caused by the Trypanosoma cruzi parasite, carried by Triatominae insect vectors. The intricate life cycle of the parasite, ecology and behavior of the vector, and lack of disease treatment options, make Chagas disease challenging to …

Characterization Of Epigenetic Plasticity And Chromatin Dynamics In Cancer Cell Models, Diana Lea Gerrard

Graduate College Dissertations and Theses

Cancer progression is driven by cumulative changes that promote and maintain the malignant phenotype. Epigenetic alterations are central to malignant transformation and to the development of therapy resistance. Changes in DNA methylation, histone acetylation and methylation, noncoding RNA expression and higher-order chromatin structures are epigenetic features of cancer, which are independent of changes in the DNA sequence. Despite the knowledge that these epigenetic alterations disrupt essential pathways that protect cells from uncontrolled growth, how these modifications collectively coordinate cancer gene expression programs remains poorly understood. In this dissertation, I utilize molecular and informatic approaches to define and characterize the genome-wide …

Association Of Sickle Cell Trait With Exertional Rhabdomyolysis And Atrial Fibrillation., Daniel R. Douce

Graduate College Dissertations and Theses

Sickle cell trait (SCT), sickle cell disease’s carrier status, is a common genetic variant found in many people of African, South Asian, Middle Eastern and Mediterranean descent. While overall considered a benign carrier status, it has been associated with an increased risk of several diseases, including exertional rhabdomyolysis (ER), and chronic kidney disease. While epidemiological evidence links SCT with ER, the actual pathophysiological mechanism less understood. Additionally, while there is an increased prevalence of atrial fibrillation (AF) documented in people with sickle cell disease, studies in individuals with SCT are lacking.

The objectives of this thesis are twofold: The first …

Understanding The Role Of Androgen Receptor Signaling In Modulating P38-Alpha Mitogen-Activated Protein Kinase In Experimental Autoimmune Encephalomyelitis, Grace Kathryn Voorhees

Graduate College Dissertations and Theses

Multiple Sclerosis (MS) is an inflammatory autoimmune disease of the central nervous system, characterized by axonal demyelination and multifocal inflammation. Like many autoimmune diseases, it is a sexually dimorphic disease, being 3-4 times more common in females than in males. p38α MAP kinase (MAPK) has an integral role in modulating inflammatory processes in autoimmunity. Conditionally ablating p38α MAPK in myeloid cells in B6 mice shows a sex difference in the animal model of MS, experimental autoimmune encephalomyelitis (EAE). In the absence of sex hormones, this sex difference was reversed, suggesting a role for sex hormones in modulating p38α MAPK signaling …

Endotoxin Increases Oxidative Stress And Oxygen Tension While Reducing Milk Protein Gene Expression In The Mammary Gland, Alexander Jonathan Spitzer

Graduate College Dissertations and Theses

Mastitis, the inflammation of the mammary gland by bacterial infection, is one of the costliest diseases to the dairy industry primarily due to a loss in milk production. The aim of this study was to investigate the mechanisms underlying reduced milk production during mastitis. We hypothesized that bacterial endotoxin induces cell apoptosis, oxidative stress and increases hypoxia while inhibiting milk gene expression in the mammary gland. To test this hypothesis, mice were bred to pregnancy, and 3 days post-partum the left and right sides of the 4th pair of mammary glands were alternately injected with either the endotoxin liposaccharide (LPS, …

Biobehavioral Predictors Of Cannabis Use In Adolescence, Philip Aaron Spechler

Graduate College Dissertations and Theses

Cannabis use initiated during adolescence may precipitate lasting consequences on the brain and behavioral health of the individual. However, research on the risk factors for cannabis use during adolescence has been largely cross-sectional in design. Despite the few prospective studies, even less is known about the neurobiological predictors. This dissertation improves on the extant literature by leveraging a large longitudinal study to uncover the predictors of cannabis use in adolescent samples collected prior to exposure. All data were drawn from the IMAGEN study and contained a large sample of adolescents studied at age 14 (N=2,224), and followed up at age …

Cisco Science: Using Omics To Answer A Range Of Key Questions, Hannah Lachance

Graduate College Dissertations and Theses

Coregonines, including cisco (Coregonus artedi), kiyi (Coregonus kiyi), and bloater (Coregonus hoyi), are a focus for prey fish conservation and restoration efforts throughout the Laurentian Great Lakes. However, fundamental questions about coregonine ecology and genetics remain. For example, we know little about how the early life stages of coregonines respond to environmental change at either the genotypic or phenotypic level. We also have limited knowledge about how to identify different species at the larval stage and the genetic relationships among species, which makes the different species difficult to study at the larval stage. To increase the probability for success in …

Investigation Of Transforming Growth Factor-Alpha And Its Potential Role In Promoting Ovarian Follicular Dominance, Allie Lynn Lundberg

Graduate College Dissertations and Theses

Intraovarian growth factors play a vital role in influencing the fate of ovarian follicles. They affect proliferation versus apoptosis of granulosa cells (GCs), and can influence whether small antral follicles continue their growth or undergo atresia. Transforming Growth Factor-alpha (TGFα), an oocyte-derived growth factor, is thought to regulate granulosa cell function, yet has been largely overshadowed by current interest in TGF-beta superfamily members, such as bone morphogenetic proteins (BMPs) and anti-Mullerian hormone (AMH). In the current study, effects of TGFα on bovine GC proliferation, intracellular signaling and cytokine-induced apoptosis were evaluated. Briefly, all small antral follicles (3-5mm) from bovine ovaries …

Future Forest Composition Under A Changing Climate And Adaptive Forest Management In Southeastern Vermont, Usa, Matthias Taylor Nevins

Graduate College Dissertations and Theses

Global environmental change represents one of the greatest challenges facing forest resource managers today. The uncertainty and variability of potential future impacts related to shifting climatic and disturbance regimes on forest systems has led resource managers to seek out alternative management approaches to sustain the long-term delivery of forest ecosystem services. To this end, forest managers have begun incorporating adaptation strategies into resource planning and are increasingly utilizing the outcomes of forest landscape simulation and climate envelope models to guide decisions regarding potential strategies to employ. These tools can be used alongside traditional methods to assist managers in understanding the …

Evolutionary History Of The Angiosperm Npf1 Gene Subfamily: Duplications, Retention And Functional Implications For Root Symbioses And Development, Giovanna Sassi

Graduate College Dissertations and Theses

ABSTRACT

The success of land plants can be attributed to the evolution of beneficial associations between plant roots and soil microbes. Root-microbe mutualisms extend the range of plant nutrient acquisition delivered through the hyphal network of mycorrhiza, an ancient and widespread plant symbiosis, or by the more recent adaptive innovation of nitrogen-fixing nodule symbioses. A plant’s genetic toolkit governs its selection of beneficial symbionts and the developmental extent of these intimate interactions. However, the evolutionary origins and function for only a few symbiotic signaling components have been explored. The central aim of this dissertation is to resolve the evolutionary events …

Residual Soil Phosphorus In Tropical Oxisols: An Opportunity To Enhance Fertilizer Use Efficiency?, Lauren Bomeisl

Graduate College Dissertations and Theses

Phosphorus (P) is essential to life on Earth and often the limiting nutrient in agricultural systems. P fertilizer is thus an essential resource to maintain food security. In the last half century, agricultural intensification has led to an increase in P fertilizer consumption from 4.6 to 17.5 Tg of P/year to meet rising global food demand. Mineral P (i.e., phosphate rock) is a non-renewable resource in the context of the Anthropocene, and its price is vulnerable to global market fluctuations. Increased efficiency of P use on farms is considered the most effective strategy to conserve P. The soybean industry demands …

Investigating The Role Of Histidyl-Trna Synthetase In Zebrafish Nervous System Development, Ashley Waldron

Graduate College Dissertations and Theses

Histidyl-tRNA Synthetase (HARS) is a member of the family of enzymes that are responsible for attaching specific amino acids to their corresponding tRNA molecules. This function is critical for accurate and efficient protein synthesis and therefore is required in every cell of an organism. Interestingly, there are a growing number of tissue-specific disorders associated with mutations in genes for this family. For example, mutations in HARS have been associated with three different genetic disorders. The tissue most commonly affected in these disorders is nervous tissue and symptoms range from peripheral neuropathy to severe cognitive impairment. The bias towards nervous system …

Caught In Motion: Structural Studies Of Nucleic Acid Repair Enzymes, Brittany Carroll

Graduate College Dissertations and Theses

Cells synthesize proteins, the molecular instruments of all cellular processes, via

intermediate biomolecules that are susceptible to damage at every step. Known as the

central dogma of molecular biology, genes encoded in deoxyribonucleic acid (DNA) are

transcribed, spliced, and matured into messenger ribonucleic acid (mRNA). These

nucleic acids direct protein synthesis by the pairing of nucleotide triplets with transfer

RNA (tRNA). tRNAs concomitantly decode the so-called codon, as they escort the

correct amino acid to the ribosome for extension of the nascent polypeptide chain.

Damage to any of these intermediate biomolecules can be highly damaging to protein

synthesis, leading to …

Mitigating Gaseous Nitrogen And Carbon Losses From Northeastern Agricultural Soils Via Alternative Soil Management Practices, Kyle Michael Dittmer

Graduate College Dissertations and Theses

Traditional agricultural practices often result in gaseous losses of nitrous oxide (N2O), ammonia (NH3), and carbon dioxide (CO2), representing a net loss of nutrients from agricultural soils, which negatively impacts crop yield and requires farmers to increase nutrient inputs. By adopting best management practices (BMPs; i.e., no-tillage, cover crops, sub-surface manure application, and proper manure application timing), there is great potential to reduce these losses. Because N2O and CO2 are also greenhouse gases (GHGs), climate change mitigation via BMP adoption and emissions reductions would be an important co-benefit. However, adopting a no-tillage and cover cropping system has had setbacks within …

Natural Selection For Disease Resistance In Hybrid Poplars Targets Stomatal Patterning Traits And Regulatory Genes., Karl Christian Fetter

Graduate College Dissertations and Theses

The evolution of disease resistance in plants occurs within a framework of interacting

phenotypes, balancing natural selection for life-history traits along a continuum of

fast-growing and poorly defended, or slow-growing and well-defended lifestyles. Plant

populations connected by gene flow are physiologically limited to evolving along a

single axis of the spectrum of the growth-defense trade-off, and strong local selection

can purge phenotypic variance from a population or species, making it difficult to

detect variation linked to the trade-off. Hybridization between two species that have

evolved different growth-defense trade-off optima can reveal trade-offs hidden in either

species by introducing phenotypic and …

Examination Of Bovine Rumen Fluid And Milk Fat Globule Membrane Proteome Dynamics, Mallory Cate Honan

Graduate College Dissertations and Theses

Proteomic technology has been increasingly incorporated into agricultural research, as characterization of proteomes can provide valuable information for potential biomarkers of health and physiological status of an animal. As dairy cattle are a dominant production animal in the USA, their biofluids such as milk, blood, urine, and rumen fluid have been examined by proteomic analysis. The research outlined herein was performed to further characterize the dynamics of specific proteomes and relate them to dairy cattle physiology.

The first experiment evaluated the diurnal dynamicity of the rumen metaproteome in Holstein dairy cattle. Rumen fluid was collected from three mid to late …

Risk Profiles For Adolescent Internalizing Problems, Kelsey Elizabeth Hudson

Graduate College Dissertations and Theses

Objective: Internalizing problems are commonly diagnosed during adolescence, and are associated with distress, impairment, and negative mental health outcomes in adulthood. Thus, there is a critical need to characterize adolescents who are at the highest risk for escalating to clinical levels of internalizing problems while extending current literature and incorporating both biological and environmental predictors. This study aimed to characterized risk profiles for fourteen-year-old adolescents who developed clinical levels of internalizing (High Internalizing [HI]) problems by age nineteen, using brain, genetic, personality, cognitive, life history, psychopathology, and demographic measures. The study also examined whether there were functional and structural brain …

Inflammation Of The Taste Sensory System: Cyclophosphamide And Amifostine, Anish Ali Sarkar

Graduate College Dissertations and Theses

Chemotherapeutics are used extensively to treat cancer patients and often induce adverse effects, including taste dysfunctions. Disturbances in taste are detrimental to the overall well-being of cancer patients, causing malnutrition and weight loss that aggravate their condition even further. Inflammation due to an infection of the taste sensory system as previously shown, has detrimental effects on the taste sensation. Our study focused on if chemotherapy induced an inflammatory response in the taste buds using cyclophosphamide (CYP), a pro-drug. Once metabolized by the P450 enzyme complex, its primary metabolite functions as an alkylating agent, involved in inhibiting cell replication cycle and …

Evaluating Climate And Environmental Drivers Of Tree Species’ Growth Within The Northern Forest, Rebecca Stern

Graduate College Dissertations and Theses

Northeastern forests are in a period of immense change. While forests are inherently dynamic ecosystems, a range of environmental challenges may cause unique and uncertain transformations within forests moving forward. How trees in northern forests respond to these environmental and anthropogenic changes remains uncertain; reductions and increases in the growth of various species and shifts in current species’ ranges may take place.

I analyzed associations between tree growth (assessed using xylem increment cores) and a range of site, climate, and pollution deposition variables for seven major tree species in Vermont. First, I looked at red oak (Quercus rubra L.), a …

An Analysis Of Beverage Consumption In The United States Using The National Health And Examination Survey 2007-2017, Sean Morris

Graduate College Dissertations and Theses

Sugar-Sweetened Beverages (SSBs) are liquids sweetened with various forms of added sugar. They are the leading source of calories and added sugar in the American diet (Drewnowski & Rehm, 2014; National Cancer Institute, 2016; Powell, Chriqui, Khan, Wada, & Chaloupka, 2013). The health and nutrition literature has increasingly identified added sugars and SSBs as a key potential contributor to a host of public health issues including obesity, type 2 diabetes, hypertension, and cardiovascular disease (Johnson et al., 2009; Malik, Popkin, Bray, Despres, & Hu, 2010; Vartanian, Schwartz, & Brownell, 2007). Concern about these public health crises has recently animated regional …

Regulation Of Natural Killer T Cell Subset Development And Function By Slam Family Receptors, Victoria Devault

Graduate College Dissertations and Theses

Semi-invariant natural killer T (iNKT) cells are critical components of the host immune response in peripheral tissues such as the lung, liver, and gut, and they play important roles in cancer, bacterial infections, autoimmunity, wound repair, and atherosclerosis. Tissue-resident iNKT cells exert their effects early in the developing immune response by rapidly producing a wide variety of cytokines and chemokines, and it was recently discovered that different tissues possess iNKT cell subsets that preferentially produce IFN-γ (NKT1), IL-4 (NKT2), or IL-17 (NKT17). Despite their critical role in the immune response, the mechanisms that regulate iNKT cell function in the periphery …

The Contribution Of Metabolism To The Regulation Of Caspase Activity And Cell Death In T Lymphocytes, Michael Anthony Secinaro

Graduate College Dissertations and Theses

During an immune response, T cell activation is mirrored by a dramatic metabolic shift from oxidative phosphorylation to glycolysis. The upregulation of glycolysis allows the cell to generate the molecules needed to rapidly proliferate and to synthesize effector molecules. The resolution of the T cell response is characterized by equally fast death of most effector T cells. The remaining T cells shift back to oxidative phosphorylation, allowing the cell to survive as a memory T cell. The upregulation of glycolysis and proliferation during the effector phase is paralleled by an increased sensitivity to T cell receptor restimulation-induced cell death (RICD). …