Open Access. Powered by Scholars. Published by Universities.®
- Discipline
- Publication Year
Articles 1 - 15 of 15
Full-Text Articles in Life Sciences
Bioactive Trace Metals And Their Isotopes As Paleoproductivity Proxies: An Assessment Using Geotraces-Era Data, T. J. Horner, S. H. Little, T. M. Conway, J. R. Farmer, J. E. Hertzberg, D. J. Janssen, A. J. M. Lough, J. L. Mckay, A. Tessin, S. J. G. Galer, S. L. Jaccard, F. Lacan, A. Paytan, K. Wuttig, Geotraces–Pages Biological Productivity Working Group Members
Bioactive Trace Metals And Their Isotopes As Paleoproductivity Proxies: An Assessment Using Geotraces-Era Data, T. J. Horner, S. H. Little, T. M. Conway, J. R. Farmer, J. E. Hertzberg, D. J. Janssen, A. J. M. Lough, J. L. Mckay, A. Tessin, S. J. G. Galer, S. L. Jaccard, F. Lacan, A. Paytan, K. Wuttig, Geotraces–Pages Biological Productivity Working Group Members
Marine Science Faculty Publications
Phytoplankton productivity and export sequester climatically significant quantities of atmospheric carbon dioxide as particulate organic carbon through a suite of processes termed the biological pump. Constraining how the biological pump operated in the past is important for understanding past atmospheric carbon dioxide concentrations and Earth's climate history. However, reconstructing the history of the biological pump requires proxies. Due to their intimate association with biological processes, several bioactive trace metals and their isotopes are potential proxies for past phytoplankton productivity, including iron, zinc, copper, cadmium, molybdenum, barium, nickel, chromium, and silver. Here, we review the oceanic distributions, driving processes, and depositional …
Shadowed Image Particle Profiling Evaluation Recorder (Sipper) Plankton And Marine Snow Abundance And Distribution Data Collected Aboard Multiple Research Cruises In The Northeastern Gulf Of Mexico From 2010-05-12 To 2010-09-16, Kendra L. Daly, Andrew W. Remsen, Kurt Kramer
Shadowed Image Particle Profiling Evaluation Recorder (Sipper) Plankton And Marine Snow Abundance And Distribution Data Collected Aboard Multiple Research Cruises In The Northeastern Gulf Of Mexico From 2010-05-12 To 2010-09-16, Kendra L. Daly, Andrew W. Remsen, Kurt Kramer
C-IMAGE data
This dataset contains the abundance and distribution of marine snow, phytoplankton, zooplankton, and larval fish, along with environmental parameters, collected aboard several research vessels (RV Weatherbird II, MV Specialty Diver, RV Gordon Gunter) in the northeastern Gulf of Mexico from 2010-05-12 to 2010-09-16. A high speed Dalsa Piranha-2 line-scan camera and a pseudo-collimated LED generated light sheet was used to image the shadows and outlines of resolvable particles that passed through a 100 cm2 field of view. The operational optical resolution of the system was ~65 um. The camera was towed at speeds between 2-3 knots in an oblique profile …
An Ocean-Colour Time Series For Use In Climate Studies: The Experience Of The Ocean-Colour Climate Change Initiative (Oc-Cci), Shubha Sathyendranath, Robert J.W. Brewin, Carsten Brockmann, Vanda Brotas, Ben Calton, Andrei Chuprin, Paolo Cipollini, André B. Couto, James Dingle, Roland Doerffer, Craig Donlon, Mark Dowell, Alex Farman, Mike Grant, Steve Groom, Andrew Horseman, Thomas Jackson, Hajo Krasemann, Samantha Lavender, Victor Martinez-Vicente, Constant Mazeran, Frédéric Mélin, Timothy S. Moore, Dagmar Müller, Peter Regner, Shovonlal Roy, Chris J. Steele, François Steinmetz, John Swinton, Malcolm Taberner, Adam Thompson, André Valente, Marco Zühlke, Vittorio E. Brando, Hui Feng, Gene Feldman, Bryan A. Franz, Robert Frouin, Richard W. Gould, Stanford B. Hooker, Mati Kahru, Susanne Kratzer, B. Greg Mitchell, Frank E. Muller-Karger, Heidi M. Sosik, Kenneth J. Voss, Jeremy Werdell, Trevor Platt
An Ocean-Colour Time Series For Use In Climate Studies: The Experience Of The Ocean-Colour Climate Change Initiative (Oc-Cci), Shubha Sathyendranath, Robert J.W. Brewin, Carsten Brockmann, Vanda Brotas, Ben Calton, Andrei Chuprin, Paolo Cipollini, André B. Couto, James Dingle, Roland Doerffer, Craig Donlon, Mark Dowell, Alex Farman, Mike Grant, Steve Groom, Andrew Horseman, Thomas Jackson, Hajo Krasemann, Samantha Lavender, Victor Martinez-Vicente, Constant Mazeran, Frédéric Mélin, Timothy S. Moore, Dagmar Müller, Peter Regner, Shovonlal Roy, Chris J. Steele, François Steinmetz, John Swinton, Malcolm Taberner, Adam Thompson, André Valente, Marco Zühlke, Vittorio E. Brando, Hui Feng, Gene Feldman, Bryan A. Franz, Robert Frouin, Richard W. Gould, Stanford B. Hooker, Mati Kahru, Susanne Kratzer, B. Greg Mitchell, Frank E. Muller-Karger, Heidi M. Sosik, Kenneth J. Voss, Jeremy Werdell, Trevor Platt
Marine Science Faculty Publications
Ocean colour is recognised as an Essential Climate Variable (ECV) by the Global Climate Observing System (GCOS); and spectrally-resolved water-leaving radiances (or remote-sensing reflectances) in the visible domain, and chlorophyll-a concentration are identified as required ECV products. Time series of the products at the global scale and at high spatial resolution, derived from ocean-colour data, are key to studying the dynamics of phytoplankton at seasonal and inter-annual scales; their role in marine biogeochemistry; the global carbon cycle; the modulation of how phytoplankton distribute solar-induced heat in the upper layers of the ocean; and the response of the marine ecosystem to …
Evaluation Of Filtration And Dna Extraction Methods For Environmental Dna Biodiversity Assessments Across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, Francisco Chavez
Evaluation Of Filtration And Dna Extraction Methods For Environmental Dna Biodiversity Assessments Across Multiple Trophic Levels, Anni Djurhuus, Jesse Port, Collin Closek, Kevan Yamahara, Ofelia Romero-Maraccini, Kristine Walz, Dawn Goldsmith, Reiko Michisaki, Mya Breitbart, Alexandria Boehm, Francisco Chavez
Marine Science Faculty Publications
Metabarcoding of marine environmental DNA (eDNA), originating from tissue, cells, or extracellular DNA, offers the opportunity to survey the biological composition of communities across multiple trophic levels from a non-invasive seawater sample. Here we compare results of eDNA metabarcoding of multiple trophic levels from individual seawater samples collected from a kelp forest in Monterey Bay, California in order to establish methods for future cross-trophic level eDNA analysis. Triplicate 1 L water samples were filtered using five different 47 mm diameter membrane filters (PVDF, PES, GFF, PCTE, and NC) and DNA was extracted from triplicates of each filter-type using three widely-used …
The Growth Response Of Two Diatom Species To Atmospheric Dust From The Last Glacial Maximum, Tim M. Conway, Linn J. Hoffmann, Eike Breitbarth, Robert F. Strzepek, Eric W. Wolff
The Growth Response Of Two Diatom Species To Atmospheric Dust From The Last Glacial Maximum, Tim M. Conway, Linn J. Hoffmann, Eike Breitbarth, Robert F. Strzepek, Eric W. Wolff
Marine Science Faculty Publications
Relief of iron (Fe) limitation in the surface Southern Ocean has been suggested as one driver of the regular glacial-interglacial cycles in atmospheric carbon dioxide (CO2). The proposed cause is enhanced deposition of Fe-bearing atmospheric dust to the oceans during glacial intervals, with consequent effects on export production and the carbon cycle. However, understanding the role of enhanced atmospheric Fe supply in biogeochemical cycles is limited by knowledge of the fluxes and 'bioavailability' of atmospheric Fe during glacial intervals. Here, we assess the effect of Fe fertilization by dust, dry-extracted from the Last Glacial Maximum portion of the EPICA Dome …
Seascapes As A New Vernacular For Pelagic Ocean Monitoring, Management And Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, Scott C. Doney
Seascapes As A New Vernacular For Pelagic Ocean Monitoring, Management And Conservation, Maria T. Kavanaugh, Matthew J. Oliver, Francisco P. Chavez, Ricardo M. Letelier, Frank E. Muller-Karger, Scott C. Doney
Marine Science Faculty Publications
For terrestrial and marine benthic ecologists, landscape ecology provides a framework to address issues of complexity, patchiness, and scale—providing theory and context for ecosystem based management in a changing climate. Marine pelagic ecosystems are likewise changing in response to warming, changing chemistry, and resource exploitation. However, unlike spatial landscapes that migrate slowly with time, pelagic seascapes are embedded in a turbulent, advective ocean. Adaptations from landscape ecology to marine pelagic ecosystem management must consider the nature and scale of biophysical interactions associated with organisms ranging from microbes to whales, a hierarchical organization shaped by physical processes, and our limited capacity …
Sipper Plankton And Marine Snow Abundance And Distribution Data For The Northeastern Gulf Of Mexico: June 2012 – August 2014, Kendra L. Daly
Sipper Plankton And Marine Snow Abundance And Distribution Data For The Northeastern Gulf Of Mexico: June 2012 – August 2014, Kendra L. Daly
C-IMAGE data
This dataset contains seasonal and interannual marine snow, phytoplankton, zooplankton, and larval fish abundance and distributions collected from the northeastern Gulf of Mexico using the Shadowed Image Particle Profiling Evaluation Recorder (SIPPER). The purpose of the dataset is to assess the seasonal and interannual zooplankton abundance and distribution after the Deepwater Horizon oil spill.
Synchronicity Between Ice Retreat And Phytoplankton Bloom In Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, Julienne Stroeve
Synchronicity Between Ice Retreat And Phytoplankton Bloom In Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, Julienne Stroeve
Marine Science Faculty Publications
Phytoplankton in Antarctic coastal polynyas has a temporally short yet spatially variant growth window constrained by ice cover and day length. Using 18‐year satellite measurements (1997–2015) of sea ice and chlorophyll concentrations, we assessed the synchronicity between the spring phytoplankton bloom and light availability, taking into account the ice cover and the incident solar irradiance, for 50 circum‐Antarctic coastal polynyas. The synchronicity was strong (i.e., earlier ice‐adjusted light onset leads to earlier bloom and vice versa) in most of the western Antarctic polynyas but weak in a majority of the eastern Antarctic polynyas. The west‐east asymmetry is related to sea …
World’S Largest Macroalgal Blooms Altered Phytoplankton Biomass In Summer In The Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, Xuelu Gao
World’S Largest Macroalgal Blooms Altered Phytoplankton Biomass In Summer In The Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, Xuelu Gao
Marine Science Faculty Publications
Since 2008, the world’s largest blooms of the green macroalgae, Ulva prolifera, have occurred every summer in the Yellow Sea, posing the question of whether these macroalgal blooms (MABs) have changed the phytoplankton biomass due to their perturbations of nutrient dynamics. We have attempted to address this question using long-term Moderate Resolution Imaging Spectroradiometer (MODIS) observations. A new MODIS monthly time-series of chlorophyll-a concentrations (Chl-a, an index of phytoplankton biomass) was generated after removing the macroalgae-contaminated pixels that were characterized by unexpectedly high values in the daily Chl-a products. Compared with Chl-a during July of 2002–2006 (the pre-MAB period), Chl-a …
Form Ia Rbcl Transcripts Associated With A Low Salinity/High Chlorophyll Plume ('Green River') In The Eastern Gulf Of Mexico, John H. Paul, Albin Alfreider, Jordan B. Kang, Roger A. Stokes, Dale Griffin, Lisa Campbell, Erla Ornolfsdottir
Form Ia Rbcl Transcripts Associated With A Low Salinity/High Chlorophyll Plume ('Green River') In The Eastern Gulf Of Mexico, John H. Paul, Albin Alfreider, Jordan B. Kang, Roger A. Stokes, Dale Griffin, Lisa Campbell, Erla Ornolfsdottir
Marine Science Faculty Publications
Coastal plumes of low salinity water that extend hundreds of kilometers offshore into oligotrophic waters are often found in the Gulf of Mexico. To characterize one such feature, a series of photoautotrophic activity and biomass parameters were measured at 2 stations in the eastern Gulf of Mexico, including pigments by high performance liquid chromatography (HPLC), autotrophic picoplankton abundance by flow cytometry, photoautotrophic 14C-HCO3- fixation, and Ribulose-1,5-diphosphate carboxylase large subunit gene (rbcL) transcriptional activity. One sampling site (Stn 4) was in a 15 m deep, low salinity (29.8 ppt) plume 242 km west of Tampa Bay. …
Simulation Of Carbon-Nitrogen Cycling During Spring Upwelling In The Cariaco Basin, John J. Walsh, Dwight A. Dieterle, Frank E. Muller-Karger, Richard Bohrer, W. Paul Bissett, Ramon J. Varela, Ruben Aparicio, Rafael Diaz, Robert Thunell, Gordon T. Taylor, Mary I. Scranton, Kent A. Fanning, Edward T. Peltzer
Simulation Of Carbon-Nitrogen Cycling During Spring Upwelling In The Cariaco Basin, John J. Walsh, Dwight A. Dieterle, Frank E. Muller-Karger, Richard Bohrer, W. Paul Bissett, Ramon J. Varela, Ruben Aparicio, Rafael Diaz, Robert Thunell, Gordon T. Taylor, Mary I. Scranton, Kent A. Fanning, Edward T. Peltzer
Marine Science Faculty Publications
Coupled biological-physical models of carbon-nitrogen cycling by phytoplankton, zooplankton, and bacteria assess the impacts of nitrogen fixation and upwelled nitrate during new production within the shelf environs of the Cariaco Basin. During spring upwelling in response to a mean wind forcing of 8 m s(-1), the physical model matches remote-sensing and hydrographic estimates of surface temperature. Within the three-dimensional flow field, the steady solutions of the biological model of a simple food web of diatoms, adult calanoid copepods, and ammonifying/nitrifying bacteria approximate within similar to 9% the mean spring observations of settling fluxes caught by a sediment trap at similar …
An Empirical Algorithm For Light Absorption By Ocean Water Based On Color, Zhongping Lee, Kendall L. Carder, R. G. Steward, T. G. Peacock, C. O. Davis, J. S. Patch
An Empirical Algorithm For Light Absorption By Ocean Water Based On Color, Zhongping Lee, Kendall L. Carder, R. G. Steward, T. G. Peacock, C. O. Davis, J. S. Patch
Marine Science Faculty Publications
Empirical algorithms for the total absorption coefficient and absorption coefficient by pigments for surface waters at 440 nm were developed by applying a quadratic formula that combines two spectral ratios of remote-sensing reflectance. For total absorption coefficients ranging from 0.02 to 2.0 m(-1), a goodness of fit was achieved between the measured and modeled data with a root-mean-square difference between the measured and modeled values for log10 scale (RMSDlog10) of 0.062 (15.3% for linear scale, number of samples N = 63), while RMSDlog10 is 0.111 (29.1% for linear scale, N = 126) for pigment absorption (ranging from 0.01 to 1.0 …
Ocean Color Chlorophyll Algorithms For Seawifs, John E. O'Reilly, Stephane Maritorena, B. Greg Mitchell, David A. Siegel, Kendall L. Carder, Sara A. Garver, Mati Kahru, Charles Mcclain
Ocean Color Chlorophyll Algorithms For Seawifs, John E. O'Reilly, Stephane Maritorena, B. Greg Mitchell, David A. Siegel, Kendall L. Carder, Sara A. Garver, Mati Kahru, Charles Mcclain
Marine Science Faculty Publications
A large data set containing coincident in situ chlorophyll and remote sensing reflectance measurements was used to evaluate the accuracy, precision, and suitability of a wide variety of ocean color chlorophyll algorithms for use by SeaWiFS (Sea-viewing Wide Field-of-view Sensor). The radiance-chlorophyll data were assembled from various sources during the SeaWiFS Bio-optical Algorithm Mini-Workshop (SeaBAM) and is composed of 919 stations encompassing chlorophyll concentrations between 0.019 and 32.79 mu g L-1. Most of the observations are from Case I nonpolar waters, and similar to 20 observations are from more turbid coastal waters. A variety of statistical and graphical criteria were …
Ribulose-Bisphosphate Carboxylase Gene Expression In Subtropical Marine Phytoplankton Populations, Scott L. Pichard, Marc E. Frischer, John H Paul
Ribulose-Bisphosphate Carboxylase Gene Expression In Subtropical Marine Phytoplankton Populations, Scott L. Pichard, Marc E. Frischer, John H Paul
Marine Science Faculty Publications
Oceanic phytoplankton are known to fix CO2 primarily through the action of the enzyme ribulose-1,5-bisphosphate carboxylase (RuBPCase). The amino acid and nucleotide sequence of the large subunit of this enzyme have been conserved across the evolution of the chlorophytic plants (from cyanobacteria to higher plants via green algae) with approximately 80 and 70 % homology at the amino acid and nucleotide levels respectively. To understand the molecular regulation of this enzyme in phytoplankton, we have measured levels of the RuBPCase large subunit (rbcL) mRNA and DNA, in combination with rates of photosynthetic CO2 fixation, autofluorescent cell counts, and chlorophyll a …
The Phytoplankton Bloom In The Northwestern Arabian Sea During The Southwest Monsoon Of 1979, John C. Brock, Charles R. Mcclain, Mark E. Luther, William W. Hay
The Phytoplankton Bloom In The Northwestern Arabian Sea During The Southwest Monsoon Of 1979, John C. Brock, Charles R. Mcclain, Mark E. Luther, William W. Hay
Marine Science Faculty Publications
The biological variability of the northwestern Arabian Sea during the 1979 southwest monsoon has been investigated by the synthesis of satellite ocean color remote sensing with analysis of in situ hydrographic and meteorological data sets and the results of wind-driven modeling of upper ocean circulation. The phytoplankton bloom in the northwestern Arabian Sea peaked during August-September, extended from the Oman coast to about 65-degrees-E, and lagged the development of open-sea upwelling by at least 1 month. In total, the pigment distributions, hydrographic data, and model results all suggest that the bloom was driven by spatially distinct upward nutrient fluxes to …