Life Sciences Commons^™

Applying Data Science And Machine Learning To Understand Health Care Transition For Adolescents And Emerging Adults With Special Health Care Needs, Lisamarie Turk

Nursing ETDs

A problem of classification places adolescents and emerging adults with special health care needs among the most at risk for poor or life-threatening health outcomes. This preliminary proof-of-concept study was conducted to determine if phenotypes of health care transition (HCT) for this vulnerable population could be established. Such phenotypes could support development of future studies that require data classifications as input. Mining of electronic health record data and cluster analysis were implemented to identify phenotypes. Subsequently, a machine learning concept model was developed for predicting acute care and medical condition severity. Three clusters were identified and described (Cluster 1, n …

Heat Stressed Exercise Elicits Shifts In Cooling Strategies Across Body Mass In Tropical Songbirds, Kristen Dee Oliver

Biology ETDs

In resting animals, water use positively correlates with metabolic rate, for example smaller animals using proportionally more water per gram of body mass. However, animals also must endure heat and exertion, and evaporative cooling requires additional water use that may not scale similarly with body size. How evaporative water loss allometrically scales with body mass during heat-stressed exercise is poorly resolved, particularly for birds, yet is critically important for understanding the consequences of climate warming on the fitness of bird populations. Here, we evaluated how air temperature (T_a) influenced evaporative water loss during exercise (EWL_exercise) across …

Inhibition Of Rad18 By Arsenic, Lindsay B. Volk

Biomedical Sciences ETDs

Arsenite exposure leads to the retention of UV-induced DNA damage, thus burdening translesion synthesis (TLS). Rad18 is an essential factor in initiating TLS through PCNA monoubiquitination and is implicated in homologous recombination. It contains two functionally and structurally distinct zinc fingers that are potential targets for arsenite binding. Results from this study reveal arsenite binding to both zinc fingers of Rad18 and a corresponding loss of domain function. Importantly, arsenite inhibited Rad18 RING-dependent PCNA monoubiquitination and polymerase eta recruitment to DNA damage. Further analysis demonstrated multiple effects of arsenite, including the reduction in the nuclear localization and UV-induced chromatin recruitment …

Effects Of Home-Based High-Intensity Interval Training Versus Continuous Walking On Cognition In Overweight And Obese Women, Kelsey C. Bourbeau

Health, Exercise, and Sports Sciences ETDs

Objective: The purpose of the present study was to determine whether six weeks of home-based high-intensity interval training versus six weeks of moderate-intensity walking improves cognition, depression, and anxiety in women that are overweight or obese. Design: A randomized control trial design. Subjects: Twelve sedentary women characterized as overweight or obese were randomized into either a six-week home-based high-intensity interval training (HIIT, n = 6, 26.6 ± 8.9 years, 37.4 ± 4.9% body fat) group or a six-week moderate-intensity walking (Walk, n = 6, 22.5 ± 3.7 years, 40.2 ± 4.1% body fat) group. Main Measures: Pre- and post-intervention, participants …

Combining Isotopic And Genetic Analyses To Quantify Microbial Facilitation Of Recalcitrant Resource Use By Terrestrial And Aquatic Consumers, Alexi Christina Besser

Biology ETDs

Quantifying the flow of energy and nutrients through food webs is foundational to understanding the structure and function of ecosystems. Here, I utilize the stable carbon and nitrogen isotope analysis of individual amino acids to trace the movement of essential amino acids through terrestrial and freshwater food webs in New Mexico, USA. I first explore isotopic patterns among co-occurring terrestrial plants and aquatic algae. I then combine this molecular isotopic approach with 16S and 18S rRNA sequencing to demonstrate the importance of gut microbiota as sources of essential amino acids to wild mammalian hosts. Next, I explore the roles of …

Science, Technology, Engineering, And Mathematics (Stem) Project-Based Learning (Pbl) Education: A New Mexico Case Study For Equity And Inclusion, Kimberly A. Scheerer

Teacher Education, Educational Leadership & Policy ETDs

This research addresses how student participation in Science, Technology, Engineering, and Mathematics (STEM) project-based learning (PBL) education activities encourages underrepresented minority student achievement in STEM career field trajectories. Seven New Mexico high school counselors and 12 STEM organization personnel were interviewed during this study. Their responses represent the nuanced professional voices where New Mexico public education intersects with STEM student interest and cultural influence.

For students, STEM PBL can foster deep integration across educational disciplines and enhance STEM career trajectory interest and readiness. STEM education converged with PBL methodologies has the ability to leverage community support while broadening student networks. …

Evaluating Microneedle Impedance For Monitoring Water Potential In Vitis Vinifera And Helianthus Annuus, Erica G. Pauer

Biology ETDs

Measurements of plant water potential provide fundamental insights into how plants are interacting with the environment to manage water needs. However, monitoring water potential is difficult, time consuming, and frequently destructive. Several methods have been in development that attempt to monitor the water status of plant tissues in a simple, continuous, and non-destructive manner. One of these methods, electrical impedance spectroscopy (EIS), is emerging as a particularly promising tool that has several applications in plant biology. I used a new microneedle system that applies small electrodes to a range of tissues. By utilizing this tool in conjunction with a standard …

Unraveling The Complex Interactions Between Members Of The Schistosoma Haematobium Group And Bulinus Snails In And Around Lake Victoria In West Kenya, Caitlin Raiselle Babbitt

Biology ETDs

Schistosoma haematobium, the agent of urogenital schistosomiasis, and
related schistosomes are transmitted by members of the genus Bulinus. Each of
the 38 Bulinus species vary in their ability to vector schistosome species and
non-schistosome trematodes resulting in a patchwork of snail-parasite
compatibilities. Accurately identifying snail intermediate hosts and the disease-
causing parasites they transmit is critical for snail control strategies and the
management of human schistosomiasis. Towards these ends, this thesis
identifies bulinid species and the parasites they transmit and implicates certain
species in the transmission of S. haematobium. The thesis also includes a
systematic review of …

Plant Responses To Drought In A Semiarid Grassland: An Isotopic Approach, Elizabeth V. Fain

Biology ETDs

Dryland ecosystems are facing unprecedented climate extremes as a result of global climate change. Water is the most limiting factor in dryland ecosystems, therefore plants in drylands have developed crucial water-use strategies for drought survival. It is important to understand plant physiological responses to water stress as drylands are projected to experience more frequent, severe droughts in the coming decades. To test how plants respond to drought in a semiarid grassland, we measured δ13C, δ15N, and C/N ratio of common C3 and C4 plants (Bouteloua gracilis, B. eriopoda, Pleuraphis jamesii, Salsola tragus, Machaeranthera pinnatifida, …

Above- And Belowground Responses To Environmental Change In The Northern Chihuahuan Desert, Renée F. Brown

Biology ETDs

Drylands cover 45% of the terrestrial surface and are expanding rapidly due to anthropogenic drivers. Altered precipitation regimes, atmospheric nitrogen deposition, and wildfire will likely have significant consequences in these regions where ecological processes are limited by water and nitrogen. In this dissertation, I explored temporal dynamics of net primary production (NPP) and related above- and belowground processes under several environmental change drivers in the Sevilleta National Wildlife Refuge, central New Mexico, USA. Located in the northern Chihuahuan Desert, this region experiences strong seasonal precipitation patterns driven by the North American Monsoon, historically characterized by frequent small rain events hypothesized …

Olfactory Detection Of Viruses Shapes Brain Immunity And Behavior, Aurora Kraus

Biology ETDs

Olfactory sensory neurons (OSNs) directly contact the environment and are

exposed to pathogens, such as viruses. When OSNs detect a virus, they coordinate antiviral immune responses locally to stop virus progression into the brain, termed the central nervous system (CNS). For example, in COVID-19 patients the SARS-CoV-2 virus replicates in the olfactory epithelium resulting in loss of olfaction, yet viral presence in the CNS is rare. However, neuronal detection of a virus by OSNs may send electrical signals to the CNS via the olfactory bulb (OB) and shape our CNS. Because the OB is the nexus between the pathogen exposed …

Relating Plant Community Structure To Carbon Dynamics In Semiarid Grasslands, Theodore D. Roper

Biology ETDs

Understanding how fine-scale changes in soil characteristics and plant community composition affect ecosystem functioning is key to predicting how biome shifts will affect regional and global carbon cycling. This is crucial in the dryland biomes of the US Southwest, projected to be one of the regions most affected by climate change. We examined fine-scale drivers of ecosystem function within two biomes – a Chihuahuan Desert grassland and Plains/Chihuahuan Desert ecotone – via long-term vegetation data, micrometeorological data, eddy covariance carbon flux measurements, and soil water and texture, finding that the ecotone site had over 30% higher soil water content, over …

Heat Stress And The Control Of Skeletal Muscle Mass, Zachary J. Fennel

Health, Exercise, and Sports Sciences ETDs

PURPOSE: 1) Compare the effects of whole-body heat stress (HS) and resistance exercise (RE) on thermoregulatory responses and skeletal muscle heat shock and hypertrophy related signaling. 2) Examine the effects of acute heat stress (HEAT) on myotube growth and fusion compared to controls (CON), hypertrophy (HYPER), and atrophy (RAPA) treatments in-vitro. METHODS: 1) Eight healthy, physically active and resistance trained individuals (18-45 years) completed RE and HS. 2) 48 hours following treatments, C2C12 myotubes were assessed for myotube area and nuclear fusion index. RESULTS: 1) RE and HS similarly increased muscle but not core temperatures. HS but not RE increased …

Heterogeneity Of Gene Trees, Jonathan Nenye Odumegwu Unm

Mathematics & Statistics ETDs

Multilocus phylogenetic studies often show a high degree of gene tree heterogeneity —gene trees that have different topologies from each other as well as from the species tree topology. In some cases, this can lead to studies with hundreds of loci having distinct gene tree topologies. The degree of heterogeneity is expected to increase when there is a high degree of incomplete lineage sorting due to short branches (as measured in coalescent units) in the species tree. Other potential sources of heterogeneity include other biological processes such as introgression, recombination within genes, ancestral population structure, gene duplication and loss, and …

Low Site-Specific Genomic Variability Is Consistent With The History(S) Of Fragmentation Of The Riparian Biota Of The Arid Southwest, Manuela Londono-Gaviria

Biology ETDs

Persistently low population sizes, when coupled with reduced interpopulation connectivity, can impede the long-term viability of species in fragmented landscapes. Riparian-associated species in the arid American Southwest now face a series of threats due to fragmented populations and changing environmental conditions. During the last century, riparian habitats have deteriorated due to the synergistic effects of livestock grazing, increasing incidence of fire, and other anthropogenic impacts potentially have made local populations smaller, less demographically stable, and susceptible to the negative impacts of genetic drift and stochastic events. We evaluated genomic variation within and across geographic areas (i.e., mountain ranges and river …

Transcriptional Analysis Of Maize Under Drought Stress And The Impact Of Plant Maturity, Oliver J. Oviedo

Biology ETDs

Climate change related drought is projected to harm maize production. Water use strategies can help mitigate the impact of drought on crop yield. However, little is known about maize metabolic response to drought at different developmental stages. To shed light on this, drought conditions were applied to maize at the six-leaf stage (V6), twelve leaf stage (V12), and tassel stage (VT). V6 and VT took eight days to achieve a low stomatal conductance threshold, but V12 took 16 days. Differential gene expression analysis of the transcriptome indicates that V6 showed the most response with 53 impacted metabolic pathways, many of …

Sierra Nevada Mixed-Conifer Regeneration Response To Repeated Burning Varies By Species, Carolina J. May

Biology ETDs

Fire-exclusion has acted as a major perturbation on dry conifer forests, increasing tree density and, in mixed-conifer forests, the dominance of shade-tolerant species. Restoration efforts aim to reverse these effects by reducing stand density, restoring relative proportions of tree species, and reintroducing recurrent fire, but the long-term effects of repeated burning on tree regeneration have not been quantified. We analyzed two decades of seedling and overstory data from the Teakettle Experimental Forest in the southern Sierra Nevada to determine how thinning and repeated burning affect seedling establishment and overstory recruitment. Across treatments, pine seedling densities remained much lower than shade-tolerant …

Fine-Mapping Of Human Antibody Specificity In Response To Natural Chlamydia Trachomatis Infection Utilized To Inform Vaccines Against Adhesion Factors, Amanda L. Collar

Biomedical Sciences ETDs

Chlamydia trachomatis (Ct) is the causative pathogen for the most common bacterial sexually transmitted infection worldwide and can cause serious medical consequences in women, including pelvic inflammatory disease, ectopic pregnancy, and infertility. For these reasons, a Ct vaccine is urgently needed, yet, its development remains a significant challenge. One barrier to producing a Ct vaccine is the gap in knowledge of protective immune responses for Ct infection, including the role that antibodies may play. Therefore, I aimed to characterize the human antibody response to natural urogenital Ct infection in women using Deep Sequence-Coupled Biopanning. Further, I leveraged these findings to …

Thermoregulation And Spatial Distribution Of Lizards In The Southwestern Usa: Adaptation To A Changing Climate, Caleb Lee Loughran

Biology ETDs

Lizards rely heavily on environmental temperatures to thermoregulate and maintain a body temperature (Tb) that optimizes physiological function and maximizes surface activity time. While early research noted the propensity for lizards to thermoregulate by shuttling between different thermal environments, it was long assumed that evaporative cooling via panting was an ineffective means of thermoregulation. However, evaporative cooling can potentially lower a lizard’s Tb significantly below air temperature, and thus allow lizards to extend activity periods during prolonged heat exposure. In this dissertation, I explore the varying abilities of lizards to thermoregulate while panting. I describe the metabolic and evaporative water …

Biodiversity And Global Change In Terrestrial Ecosystems, Timothy J. Ohlert

Biology ETDs

Terrestrial ecosystems are critical to human and ecological processes but many gaps in our knowledge remain regarding how terrestrial plant communities assemble and respond to global change. I used field experiments distributed around the world, including long-term experiments from the Sevilleta National Wildlife Refuge (SNWR) in New Mexico and deserts of the southwestern U.S., to evaluate the consequences of drought and other abiotic stressors on plant communities. Dominant grasses were particularly important for the productivity and structure of grasslands at SNWR. In general, the structure of desert plant communities had high resistance to extreme drought, though grasses and other perennial …

Traits And Functional Diversity Of A Hyperdiverse Bee Assemblage Are Linked To Aridity, Benjamin D. Turnley

Biology ETDs

Climate change in the American Southwest is altering the composition of species assemblages. However, the resulting patterns in mean trait values and functional diversity are poorly understood. Bees assemblages in Southwestern drylands are exceptionally diverse, and vary greatly in their morphologic traits. In this study we focused on two questions: Have community-weighted mean trait values shifted over time and/or with aridity, consistent with the hypothesis that aridification is driving bee assemblage change? Has the functional diversity of the Sevilleta bee assemblage declined over time and/or with aridity, consistent with the hypothesis that pollination services could be declining? To address these …

Ontogenetic Niche Shift As A Driver Of Community Structure And Diversity In Non-Avian Dinosaurs, Katlin Schroeder

Biology ETDs

As some of the most charismatic megafauna to ever walk the earth, the physiology, morphology, growth and evolution of non-avian theropods has been studied exhaustively, yet little is understood about their roles in ecosystems as juveniles. For carnivorous megatheropods, which exceed 1,000kg in mass yet hatched from eggs of limited size, the likelihood of utilizing different prey through ontogeny was high, simply by proxy of the immense difference in size between adults and juveniles. We found these ontogenetic niche shifts, evidenced by significantly different dental microwear in Tyrannosaurids, to have excluded dinosaurian mesocarnivores from Mesozoic communities. The few dinosaurian mesocarnivores …

Land Rich, Cash Poor: Hispanic Subsistence Agri-Culture On Acequia Farms Of Northern New Mexico, 1880-1950s, José A. Rivera Ph.D.

Faculty Publications

Acequia-based agriculture in Hispanic northern New Mexico originated with the arrival of settlers from the central valley of Mexico in the late sixteenth century and later following the Camino Real into the upper Río Grande and its tributaries. The high desert environment required irrigation for food production and survival. Land parcels in the rural villages of northern New Mexico were small, and crop yields were limited to home consumption on a subsistence basis, an economy that lasted well into the territorial period and statehood of New Mexico. Despite a wage economy introduced with the arrival of the railroad around 1880 …

The Consequences Of Climate Change For Native Bee Assemblages, Melanie R. Kazenel

Biology ETDs

Recent declines in terrestrial arthropod biodiversity highlight the need to pinpoint which taxa and ecosystem services are most threatened, and why. But, for most of the world’s ~20,000 bee species, we lack robust evidence of population trends, and the role of climate change remains surprisingly little studied. I used long-term bee monitoring data from the Sevilleta Long-Term Ecological Research Program (Socorro, NM, USA), along with complementary experimental and observational data, to examine how climate relates to bee abundance and diversity patterns over time and space, and to identify the traits that govern bees’ climate sensitivities.

Improving Photosynthetic Efficiency In Microalgae Through The Genetic Engineering Of Energy Sensors And Photoreceptors, Taylor L. Britton

Biology ETDs

Through photosynthesis microalgae can convert sunlight, water, and CO₂ into chemical energy that can be used to generate carbon neutral biofuels and biomass. With an ever-increasing demand and need for petroleum substitutes it is imperative that we improve the output of industrial-relevant crops such as microalgae. One important way of improving output in algae is by understanding the roles that stress and energy conversion is regulated in these organisms. Photosynthetic organisms fundamentally depend on light- and sugar-driven metabolic and signaling networks, which integrate environmental cues to govern and sustain growth and survival. SnRKs (SNF1-related protein kinases) and the photoreceptor …

A Diverse Flea (Shiponaptera) Assemblage From The Small Mammals Of Central New Mexico, Dianne Esther Peterson

Biology ETDs

The geographical ranges of many mammals and their associated parasites are dynamic. Comprehensive documentation of these communities over time provides a foundation for interpreting how changing environmental conditions, driven by accelerating climate change, other anthropogenic disturbances, and natural events may influence host-parasite interactions. Fleas (Order Siphonaptera) are obligate, hematophagous parasites of birds and mammals with medical interest due to their role in transmitting pathogens. From 2016 to 2019, we sampled the small mammal and associated flea communities in El Malpais National Conservation Area (El Malpais) in Cibola County, New Mexico. Among 898 mammalian specimens, 925 fleas representing 29 species were …

Investigation Of Iron Homeostasis In Colon Tumorigenesis, Hyeoncheol Kim Ph.D.

Chemistry and Chemical Biology ETDs

Iron is essential part of the human metabolism. It is a catalytic co-factor for many proteins, but it generates harmful reactive oxygen species in human body. Also, many irons metabolic genes are changes in human cancer cells compared to normal cells, leading to iron accumulation in cancer cells especially in colorectal cancer.

Due to iron’s significant role in colorectal cancer promotion, much research is focused on its role in colorectal cancer genesis. But some important metabolic aspects are not fully addressed and researched. One key aspect of iron on colorectal cancer cell progression is hemin iron. Much research warned hemin …

3d Library From Body Size From Unconventional Specimens: A 3d Geometric Morphometrics Approach To Fishes From Ancestral Pueblo Contexts, Jonathan Dombrosky, Thomas F. Turner, Alexandra Harris, Emily Lena Jones

Anthropology Faculty & Staff Publications

Animal body size estimation from zooarchaeological specimens often relies on specific, one-dimensional (i.e., conventional) measures from skeletal elements. Here, we introduce an animal body size estimation technique for archaeological fishes that relies on 3D reference scans and the calculation of centroid size, a standard 3D geometric morphometric proxy measure for organism size. Centroid size-based estimations on whole caudal vertebrae are strongly correlated with a widely accepted measure (i.e., centrum width), but the scalability and flexibility of the centroid size-based approach allows for use on a wide variety of fragmented remains. We use zooarchaeological fish remains (subfamily Ictiobinae) from late pre-Hispanic …

Keeping Your Cool: Thermoregulatory Performance And Plasticity In Desert Cricetid Rodents, Richard W. Ramirez, Eric A. Riddell, Steven R. Beissinger, Blair W. Wolf

Biology ETDs

Small mammals in hot deserts often avoid heat via nocturnality and fossoriality and are thought to have a limited capacity to dissipate heat using evaporative cooling. Research to date has focused on thermoregulatory responses to air temperatures (T_a) below body temperature (T_b). Consequently, the thermoregulatory performance of small mammals exposed to high air temperatures is poorly understood, particularly responses across geographic and seasonal scales. We quantified the seasonal thermoregulatory performance of four cricetid rodents (Neotoma albigula, N. lepida, Peromyscus eremicus, P. crinitus) exposed to high T_a, at four sites …

Collected Papers (On Various Scientific Topics), Volume Xiii, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This thirteenth volume of Collected Papers is an eclectic tome of 88 papers in various fields of sciences, such as astronomy, biology, calculus, economics, education and administration, game theory, geometry, graph theory, information fusion, decision making, instantaneous physics, quantum physics, neutrosophic logic and set, non-Euclidean geometry, number theory, paradoxes, philosophy of science, scientific research methods, statistics, and others, structured in 17 chapters (Neutrosophic Theory and Applications; Neutrosophic Algebra; Fuzzy Soft Sets; Neutrosophic Sets; Hypersoft Sets; Neutrosophic Semigroups; Neutrosophic Graphs; Superhypergraphs; Plithogeny; Information Fusion; Statistics; Decision Making; Extenics; Instantaneous Physics; Paradoxism; Mathematica; Miscellanea), comprising 965 pages, published between 2005-2022 in different …