Life Sciences Commons^™

Prediction Of Breeding Values For Unmeasured Traits From Measured Traits, Kristin L. Barkhouse, L. Dale Van Vleck

Conference on Applied Statistics in Agriculture

Henderson (1977, 1984) described a method for prediction of breeding values for traits not in the model for records. This method may be practical for animal or sire models for the case when no measurements can be obtained on any animals for some traits to be evaluated. The least squares equations are augmented with A^-1⊗G_N^-1 rather than with A^-1⊗G₀^-1 where A is the numerator relationship and G₀and G_N are the genetic covariance matrices for measured and for all traits. This method can be used for each unmeasured trait or …

Applications Of Estimable Functions In Agricultural Research With Special Emphasis On The Glm Procedure Of Sas., L. Munyakazi, R. L. Hintz, B. D. Selby

Conference on Applied Statistics in Agriculture

An understanding of estimable functions is essential when using an overparameterized linear model. The most attractive features of these functions are their invariance property to the solution vector and their wide range of practical applications in agricultural research. This study reviews some of the ways that estimable functions can be used by the agricultural scientist.

Extrapolating Intra-Cluster Correlation To Optimize The Size Of Segments In An Area Frame., E. Carfagna, F. J. Gallego

Conference on Applied Statistics in Agriculture

In the frame of the "Rapid Crop Area Estimates in the European Community" we use a sample of squared segments (pieces of land) of 49 ha. each; estimates are made for difference of crop areas between years. The optimum size seems to be larger than the current one, and much larger if ground survey data are obtained by photo-interpretation. The main purpose of this paper is to assess a method, based on splitting the segments into pieces of 1/4 ha., to forecast the precision of estimates with larger segments. The tests made for France confirm the belief that better estimates …

Modelling Within-Plant Spatial Dependencies Of Cotton Yield, E. B. Moser, R. E. Macchiavelli, D. J. Boquet

Conference on Applied Statistics in Agriculture

In field experiments during 1987-1990, cotton plants were grown under 8 different levels of nitrogen application to assess the impact of nitrogen fertilization on the fruiting and yield distribution of cotton within the plant (Boquet et al. 1993).lr.dividual boll weights and average seedcotton yield were determined at each fruiting site fur each main-stem node along the plant. Various models of dependence and independence are possible to explain and account for the dependencies of the yields among the sites and nodes of the plant. Here we investigate models of total yield per node and yield per node adjusted for the number …

Fitting Bole-Volume Equations To Spatially Correlated Within-Tree Data, Timothy G. Gregoire, Oliver Schabenberger

Conference on Applied Statistics in Agriculture

Equations to predict the volume of an individual tree bole between stump height and the height at which its diameter has tapered to a specified minimum are common in forestry. When fitting such a regression equation, a sample of trees which span the range of sizes needed for eventual application of the equation is selected. Bole diameter is measured at ascending heights on the bole. Each tree, therefore, contributes multiple measurements to the data fitted to the equation. In contrast to past practice, we model these data in a manner which accounts for the likely spatial correlation among measurements within …

A Bootstrap Analysis Of Temperature Effects On Bean Leaf Beetle Egg Hatch Times, Kenneth J. Koehler

Conference on Applied Statistics in Agriculture

The bean leaf beetle (Cerotoma trifurcata) is a significant soybean pest in the Midwest. The possibility of reducing crop damage by disrupting the synchrony between emergence of F2 adults and the availability of young green pods requires an increased understanding of bean leaf beetle (BLB) phenology. An important consideration in predicting emergence of F2 adults is the influence of temperature on the rates of egg and larval development. In this article we concentrate on the analysis of data from a controlled study of the effects of temperature on both the hatch time distribution and the viability of BLB …

Nonlinear Regression Functions For Forage Nutrient Disappearance From Bags Incubated In The Rumen, W. J. E. Potts, B. P. Glenn, J. B. Reeves, R. A. Erdman

Conference on Applied Statistics in Agriculture

Seven nonlinear regression functions are compared for fitting rumen in situ disappearance data. The standard function is based on a simple one-compartment model. In addition, we consider a time lag modification, a two-compartment model, and functions based on underlying probability models for degradation time. The empirical suitability of the seven regression functions are assessed using two in situ experiments involving forages fed to dairy cows. A function based on the loglogistic distribution is shown to have empirical and theoretical advantages.

Obtaining Models For Alfalfa, Sorghum, And Wheat Residue Decomposition, H. H. Schomberg, T. W. Popham

Conference on Applied Statistics in Agriculture

Crop residues provide an economical means for controlling wind and water erosion in addition to being a valuable source of plant nutrients. As residues decompose they lose nutrients, mass and the ability to protect the soil surface from erosive forces. The research was designed to evaluate rates of residue decomposition of sorghum, wheat and alfalfa on the soil surface and buried, in five soil moisture regimes. Moisture was applied to soil by line source irrigation and bags containing crop residues were retrieved and analyzed across time. Thus, observations were repeated in both space and time .

Wieder and Lang (1982) …

Determination Of The Inoculation Frequency, Timing Of Inoculation And Dose Of A Bacterial Ruminal Inoculant For Acidosis Prevention In Feedlot Cattle, J. F. Boucher, W. J. Smolenski, J. A. Robinson

Conference on Applied Statistics in Agriculture

We are evaluating the efficacy of a ruminal bacterial inoculant (Megasphaera elsdenii 407 A) for prevention of acute acidosis in grain-fed cattle. As a part of this process, we examined the effects of inoculation frequency, timing of inoculation and dose of 407 A for prevention of acute acidosis in ruminally fistulated cattle. Three levels of frequency, two levels of timing and three doses were considered, however, a complete 3x2x3 factorial study was not run because of resource constraints. The study was conducted in two separate trials. The first was designed as a 3x2 factorial experiment with inoculation frequency and timing …

Design For The Experimenter, O. B. Allen, D. A.J. Ryan

Conference on Applied Statistics in Agriculture

Three research problems, for which there was no obvious textbook design available, are presented. Each of the three involve constructing incomplete block designs for factorial treatment arrangements. While the designs are not likely optimal by any of the classical criteria, they meet the objectives of the research projects. The constructions involved confounding, with incomplete blocks, those effects which were of least interest. However, effects of interest were also allowed to be slightly non-orthogonal to blocks in order to be able to examine a larger number of effects of interest.

Experimental Error In Agronomic Field Trials, Thomas M. Loughin, D. F. Cox, Paul N. Hinz, William T. Schapaugh Jr., Lora Kilgore-Norquest

Conference on Applied Statistics in Agriculture

Agronomic experiments often summarize work carried out in trials run in several locations over several years, referred to generically as environments. The appropriate statistical analyses for these experiments depend on definitions used for experimental error. The results of one such experiment, in which identical designs were used in each environment, illustrate the commonalities and differences in analyses that can result from using different definitions of experimental error.

Markov-Recapture Population Estimates, E. Paul Wileyto

Conference on Applied Statistics in Agriculture

This paper reviews recent development of a method for estimating insect populations. It is like mark-recapture methods, except that marking is done passively at bait stations by the insects themselves, and capture probabilities are generated using a simple Markov process model. Assumptions about rates of marking and capture are made from the sampling scheme, and the estimate is based upon the resulting multinomial probability distribution and maximum likelihood methods. The paper continues to review the sampling distributions for the population estimate, revealed by simulation, and explores correction of the bias. Relative likelihood based confidence intervals are compared with two standard …

Predicting Common Crupina Habitat With Geographic And Remote Sensing Data, Timothy S. Prather, Bahman Shafii, Robert H. Callihan

Conference on Applied Statistics in Agriculture

Field surveys for common crupina, as part of an eradication program, are time intensive and could be made more efficient if common crupina habitat could be predicted. Slope, aspect, and vegetation data were used as generalized plant community variables to predict common crupina habitat using a transformed logistic regression. Models were constructed using either aspect or slope as an explanatory variable such that one model predicted the overall effect of either slope or aspect and a set of models predicted the effect of slope or aspect at each of three vegetation classes. A second data set was used to validate …

Stratification And Cluster Estimator On An Area Frame By Squared Segments With An Aligned Sample, M. Fuentes, F J. Gallego

Conference on Applied Statistics in Agriculture

Several European countries (Portugal, Spain, Greece, Rumania, and the Czech Republic) make crop surveys on area frame with an aligned systematic sampling of squared segments. So far crop area estimates are obtained with standard formulae for random sampling, without using the spatial structure of the sample. This is in general conservative, the estimated standard error is larger than the error actually made. Taking as clusters the set of segments with the same relative position in a block, gives often lower but very unstable variances. A more stable variance estimate is computed by repeated random permutations of the sample segments in …

Generalized Linear Mixed Models: An Application, Stephen D. Kachman, Walter W. Stroup

Conference on Applied Statistics in Agriculture

The purpose of this paper is to present a specific application of the generalized linear mixed model. Often of interest to animal-breeders is the estimation of genetic parameters associated with certain traits. When the trait is measured in terms of a normally distributed response variable, standard variance-component estimation and mixed-model procedures can be used. Increasingly, breeders are interested in categorical traits (degree of calving difficulty, number born, etc.). An application of the generalized linear mixed to an animal breeding study of the number of lambs born alive will be presented. We will show how the model is determined, how the …

Generalized Linear Mixed Models - An Overview, W. W. Stroup, S. D. Kachman

Conference on Applied Statistics in Agriculture

Generalized linear models provide a methodology for doing regression and ANOV A-type analysis with data whose errors are not necessarily normally-distributed. Common applications in agriculture include categorical data, survival analysis, bioassay, etc. Most of the literature and most of the available computing software for generalized linear models applies to cases in which all model effects are fixed. However, many agricultural research applications lead to mixed or random effects models: split-plot experiments, animal- and plant-breeding studies, multi-location studies, etc. Recently, through a variety of efforts in a number of contexts, a general framework for generalized linear models with random effects, the …

Autologistic Model Of Spatial Pattern Of Phytophthora Epidemic In Bell Pepper: Effects Of Soil Variables On Disease Presence, M. L. Gumpertz, J. Graham, J. B. Ristaino

Conference on Applied Statistics in Agriculture

The pathogen Phytophthora capsici causes lesions on the crown, stem, and leaves of bell pepper, and rapidly causes the plant to die. The spatial patterns of disease in an agricultural field contain information about pathogen dispersal mechanisms and can be useful for developing methods of control of disease. Soil water content, soil pathogen population density, and disease incidence data were collected on a 20 x 20 grid in two naturally infested commercial bell pepper fields. In one field the initial pattern of disease closely matched the soil water content pattern and disease developed in areas where the pathogen population levels …

Determining Sample Size To Bound The Probability Of Classifying A Sample Into The Wrong One Of Two Multinomially Distributed Populations, C. Philip Cox

Conference on Applied Statistics in Agriculture

The problem considered is that of choosing between the two specifications . . . of known multinomial probabilities on the basis of sample values x _j, the observed counts in the j = 1,... ,k, classes, with . . . The particular question examined is 'how large should N be to achieve reliable differentiation?'. It is shown how to find N such that the probability of misc1assification does not exceed a prescribable value. The method is exemplified in a genetic context.

Vertical Integration In The Chicken Broiler Industry, Juana Sanchez

Conference on Applied Statistics in Agriculture

This paper analyzes three hypotheses concerning supply in the U.S. chicken broiler industry: (a) there has been a cycle in the industry of approximately 27-36 months length; (b) the seasonal and other periodic components, as well as relations between variables, have changed as a result of vertical integration in the industry; (c) the effects of vertical integration in the industry were counteracted in the early seventies by such forces external to the industry as domestic and international economic conditions .

The hypotheses are analyzed using new monthly, non-seasonally adjusted time series data for chick placement, wholesale broiler prices, chicks hatched …

A Study Of The Statistical Properties Of Two Measures Of Competition, Ann L. Oberg, Linda J. Young, Leon G. Higley

Conference on Applied Statistics in Agriculture

In competition studies, two species are studied, generally in ratios of 1:0, 3:1, 1:1, 1:3,and 0: 1. The standard measure of competition is the Relative Crowding Coefficient (RCC)...

An Individual-Plant Growth Simulation Model For Quantifying Plant Competition, William J. Price, Bahman Shafii, Donald C. Thill

Conference on Applied Statistics in Agriculture

Plant competition models traditionally have used population or stand level parameters as a basis for modeling. While such models may be valid with regard to average responses, they fail to account for important factors such as within stand variability and spatial relationships. This translates to an assumption of uniformity in growth characteristics among individual plant,S as well as an equidistant spacing arrangement which are unlikely in real populations. One alternative is to model the growth characteristics of individual plants separately which, when combined as a system, will inherently have popUlation attributes related to competition. Competition models of this type allow …

Editor's Preface, Table Of Contents, And List Of Attendees, James R. Schwenke

Conference on Applied Statistics in Agriculture

These proceedings contain papers presented in the sixth annual Kansas State University Conference on Applied Statistics in Agriculture, held in Manhattan, Kansas, April 24 through 26, 1994..

Raising Dairy Heifers: A Business (1994), J.L. Morrill

Kansas Agricultural Experiment Station Research Reports

On many dairy farms, improvement is needed in raising replacement heifers, especially in providing proper nutrition and management to allow for freshening at 23 to 24 mo of age at a desirable size. With larger herds, there is a trend toward more specialization, which may (but may not) result in more attention to, or responsibility for, proper care and management of the heifer. In some cases, the heifers are raised by a person at a location away from the dairy farm on which they originated, and contract raising of dairy replacements has several potential advantages and disadvantages. These are discussed …

Sodium Sulfite And Extrusion Affect The Nutritional Value Of Soybean Products For Nursery Pigs (1994), L L. Burnham, I H. Kim, Terry L. Gugle, Robert H. Hines, Joe D. Hancock

Kansas Agricultural Experiment Station Research Reports

A total of 150 weanling pigs (14.2 lb avg body wt) was used in a 28-d growth assay to determine the effects of using sodium sulfite as an extrusion enhancer for soy products. Treatments were: 1) soybean meal (SBM), 2) SBM + sodium sulfite, 3) extruded SBM, 4) SBM extruded with sodium sulfite, 5) extruded whole soybeans, and 6) whole soybeans extruded with sodium sulfite. For d 0 to 14, pigs fed SBM had greater average daily feed intake (ADFD, although they had poorer efficiency of gain (F/G) than pigs fed the extruded soy products. Also, pigs fed sodium sulfite …

Roasting And Extruding Affect Nutrient Utilization From Soybeans In 10- And 20-Lb Pigs (1994), I H. Kim, Terry L. Gugle, Robert H. Hines, Joe D. Hancock

Kansas Agricultural Experiment Station Research Reports

Ninety nursery pigs were used in two metabolism experiments to determine the effects of roasting and extruding on the nutritional value of Williams 82 soybeans with (+K) and without (-K) gene expression for the Kunitz trypsin inhibitor. Treatments for both experiments were: 1) soybean meal; 2) +K roasted; 3) +K extruded; 4) -K roasted; and 5) -K extruded. The roasting and extrusion treatments were accomplished with a Roast-A-Tron8 roaster and an InstaPr0 8 extruder. Diets were the soybean preparations (96.5% of the diet) with only vitamins and minerals added as needed to meet or exceed NRC requirements. Daily feed allowance …

Effects Of Alternative Soy Sources On Growth Performance In Early-Weaned Pigs (1994), M R. Cabrera, M M. Rantanen, Robert H. Hines, Joe D. Hancock

Kansas Agricultural Experiment Station Research Reports

A total of 144 pigs (initial body wt of 10.4 lb) was used in a 56-d growth assay to determine the effects of different soybean preparations on growth performance and cost of gain in nursery pigs. Experimental diets were fed in three phases from d 0 to 35 postweaning (Le., d 0 to 7, 7 to 21, and 21 to 35). Treatments were a soybean meal-based regimen; a dry-extruded whole soybeans (mill-run) regimen; and a specially processed soy products regimen (Le., soy isolate in Phase I, soy concentrate in Phase 11, and extruded soy flour in Phase Ill). All diets …

Appropriate Methionine:Lysine Ratio For The Segregated Early-Weaned Pig (1994), K Q. Owen, B T. Richert, K G. Friesen, Robert D. Goodband, Jim L. Nelssen, Michael D. Tokach, Steven S. Dritz

Kansas Agricultural Experiment Station Research Reports

A total of 350 crossbred pigs (9.0 ± 2 d old and 8.4 lb +f- 2.5 BW) was used to determine the appropriate methionine: lysine ratio in diets for the segregated early-weaned pig. Two lysine levels (1.8 and 1.4%) and five methionine levels within each lysine level were used in a 2 x 5 factorial arrangement. Methionine: lysine ratios ranged from 21.5 to 33.5 %. From d 0 to 21 postweaning, all diets contained 25%dried whey, 12% lactose, 7.5% spray dried porcine plasma, 6.0% select menhaden fish meal, and 1.75% spray-dried blood meal. The basal diets containing 1.4 and 1.8% …

The Effects Of Increasing Dietary Lysine In The Phase Iii Starter Diet On Growth Performance Of Segregated Early-Weaned Pigs (1994), K Q. Owen, J R. Bergstrom, K G. Friesen, J W. Smith Ii, B T. Richert, Robert D. Goodband, Jim L. Nelssen, Michael D. Tokach

Kansas Agricultural Experiment Station Research Reports

One hundred forty-four high-health, high-lean growth barrows were used to determine the dietary lysine requirement to maximize growth performance from 40 to 75 lb. The experiment was designed as a randomized complete block, with blocks established on initial weight. Prior to the start of the study, pigs were fed a common Phase II diet (1.4% lysine) for 14 d. After the 14 d acclimation period, pigs were allotted to each of six dietary treatments, ranging from .75 to 1.25% digestible lysine (.91 to 1.49% total dietary lysine). Pigs were housed in pens of four, with six replicate pens per treatment. …

The Effects Of Added Salt In The Phase Ii Starter Pig Diet (1994), C A. Kerr, B T. Richert, J R. Bergstrom, W B. Nessmith, Robert D. Goodband, Michael D. Tokach, Jim L. Nelssen, Steven S. Dritz

Kansas Agricultural Experiment Station Research Reports

A total of 178 pigs (initially 10.5 Ib and 19 d of age) was used to compare the effects of added salt in the Phase II (d 14 to 28 postweaning) diet. Pigs were alloted by sex and inital weight and placed in pens containing either nine or 10 pigs. All pigs were fed the same Phase I diet for the first 14 d postweaning. The Phase I diet contained 20% dried whey, 7.5% spry-dried porcine plasma (SDPP), and 1.75% spray-dried blood meal (SDBM) and was formulated to contain 1.5% lysine and .42% methionine. On day 14, pigs were assigned …

Successful Hog Marketing Groups (1994), J Mintert, R Tynon, Michael D. Tokach, Michael R. Langemeier, Ted C. Schroeder

Kansas Agricultural Experiment Station Research Reports

Ten hog marketing groups located in Kansas and Iowa were surveyed during 1993 to determine the success, operation, and management of hog marketing groups. Results offer insights into the structure and organization of cooperative hog marketing efforts. Several guidelines for organizing successful hog marketing groups are proposed. Producers interested in forming a marketing group should consider having a written agreement, hiring a marketing group coordinator, and marketing hogs on a carcass merit basis.; Swine Day, Manhattan, KS, November 17, 1994