Life Sciences Commons^™

Estimating Relative Juvenile Abundance Of Ecologically Important Finfish In The Virginia Portion Of Chesapeake Bay: 2024 Annual Report (1 July 2023 – 30 June 2024), Troy D. Tuckey, Mary C. Fabrizio

Reports

The VIMS Juvenile Finfish Trawl Survey provides crucial data to state, regional, and national fisheries management agencies, including the Virginia Marine Resources Commission (VMRC), the Atlantic States Marine Fisheries Commission (ASMFC), the Mid-Atlantic Fisheries Management Council (MAFMC), and the National Marine Fisheries Service (NMFS). Annual indices of juvenile abundance have been generated from trawl survey data for species of key recreational and ecological importance in the Virginia portion of Chesapeake Bay. These include Spot, Atlantic Croaker, Weakfish, Summer Flounder, Black Sea Bass, Scup, Striped Bass, White Perch, White Catfish, Channel Catfish, Blue Catfish, Silver Perch, American Eel, and Bay Anchovy. …

A Cooperative High Precision Dredge Survey To Assess The Mid-Atlantic Sea Scallop Resource Area In 2021 And 2022, Sally Roman, Carter Lin, David Rudders

Reports

For the sea scallop, Placopecten magellanicus, current and accurate information related to the abundance and distribution of adult and juvenile scallops is essential for effective management of the resource. Scallop management is a combination of input and output controls, with a focus on spatial area management. The continued prosperity of the scallop resource and fishery is dependent on both periodic and large incoming year classes, as well as a mechanism to delineate the scale of a recruitment event and subsequently monitor the growth and abundance of these scallops over time.

Acknowledging the importance of accurate, timely, and meaningful information necessary …

Artificial Light As A Tool To Reduce Bycatch In The Sea Scallop, Placopecten Magellanicus, Dredge Fishery, Sally Roman, David Rudders, Dan Watson, Tom Rossiter

Reports

Two bycatch reduction methods were tested on a sea scallop dredge to investigate their effects on bycatch reduction. SafetyNet Technologies Pisces light technology and a 6 inch square mesh escape panel installed in the twine top were tested. White, green and blue light colors, two flash rates and two brightness levels for the Pisces lights were tested. The Pisces lights were tested on the bale bar as well as with the experimental and commercially used twine tops. A two row escape panel was tested in the center and the trailing edge of the twine top. Pisces lights reduced the catch …

Comparative Accumulation And Effects Of Microplastics And Microplastic-Associated Pcb-153 In The White Hard Clam (Meretrix Lyrata) And Giant River Prawn (Macrobrachium Rosenbergii) Following Chronic Exposure, Bao-Son Trinh, Lien Thi Le, Loc Minh Tran, Gunther Rosen, Robert C. Hale

VIMS Articles

Global environmental abundance of microplastics (MPs) is increasing. MPs may sorb hydrophobic organic contaminants (HOCs), accumulate in and cause deleterious effects on exposed organisms. This study investigated and compared the accumulation and effects of MPs and MP-associated PCB in the two indigenous aquatic organisms in Viet Nam, the white hard clams, Meretrix lyrata, and the giant river prawns, Macrobrachium rosenbergii. The test organisms were exposed to either polyethylene microbeads (PEMBs), waterborne polychlorinated biphenyl 153 (PCB-153), or PEMB-associated PCB-153 (PEMB-PCB) over 28 days. Organismal MP accumulation, survival, and weight gain were examined at various sampling intervals. In general, MP …

Evaluating Environmental Enrichment As A Preventative Treatment In A Zebrafish (Danio Rerio) Model Of Alzheimer's Disease, Ainsley Craddock

Undergraduate Honors Theses

Alzheimer’s Disease (AD) is a progressive neurodegenerative disorder that leads to several cognitive deficits, including impairments in spatial memory (Alzheimer’s Association, “What is Alzheimer’s Disease?,” 2024). This is thought to occur due to atrophy in the hippocampus and cholinergic system (Ferreira-Vieira et al., 2016). Acetylcholine receptor antagonists, such as scopolamine, can mimic the effects of AD by decreasing acetylcholine activity at muscarinic receptors in the hippocampus. Scopolamine is an antiemetic that is FDA approved to treat certain kinds of nausea, but it has become a popular pharmacological model for studying the cognitive impairments associated with AD (Bajo et al., 2015). …

Estimation Of Juvenile Striped Bass Relative Abundance In The Virginia Portion Of Chesapeake Bay Annual Progress Report: 2023 - 2024, Jack R. Buchanan, Mary C. Fabrizio, Troy D. Tuckey

Reports

The 2023 juvenile Striped Bass abundance index was 4.26 and was significantly lower than the reference mean of 7.77 for the period 1980 to 2009. Abundance indices were below average in the James and Rappahannock rivers and average in the York River in 2023 compared with the river-specific reference means (1980-2009). Relatively low catches of young‐of‐the‐year Striped Bass from sites upriver and downriver of core nursery areas suggest juvenile Striped Bass largely remained within core nursery areas in 2023.

Indices of abundance were calculated for three additional economically and recreationally important fishes in Virginia waters. Juvenile White Perch abundance indices …

Virginia Game Fish Tagging Program: 2023 Annual Report, Susanna Musick, Lewis Gillingham

Reports

Through 2023, the Virginia Game Fish Tagging Program (VGFTP) has maintained a 28-year database of records for tagged and recaptured fish. The program is a cooperative project of the Virginia Saltwater Fishing Tournament (VSFT) under the Virginia Marine Resources Commission-(VMRC) and the Virginia InsƟtute of Marine Science (VIMS) of William & Mary (under the VIMS Marine Advisory Program).

The main goal of the program is to train and maintain an experienced group of anglers who volunteer their Ɵme to properly tag and release fishes. Data on tagged and recaptured fish are summarized in annual re- ports and are accessible on …

Conservation Targeting: Models And Policy For Climate Resilience Of Coastal Habitat And Heritage Resources In Virginia’S Coastal Zone, Pamela Mason, Robert Isdell, Christine Tombleson, Rob Evans, David N. Bucklin, Anne C. Chazal, Dan Hannon, Jason F. Bulluck, Joseph T. Weber, Elizabeth Andrews, Gray Montrose

Reports

In response to accelerating sea level rise and its anticipated impacts on coastal habitats and species, we developed spatial models and maps of shoreline habitat distributions in Coastal Virginia to the year 2100. This report is a culmination of a three-year effort to develop and serve geospatial data to inform land use decision making within the context of projected habitat and current elemental occurrences to promote habitat and species persistence and resilience. The project was a collaboration of the Center for Coastal Resources Management (CCRM) at the Virginia Institute of Marine Science (VIMS the Virginia Department of Conservation and Recreation, …

Ecological Monitoring Program At Vims Esl: Annual Report 2023, Paige G. Ross, Richard A. Snyder

Reports

An Ecological Monitoring Program (EMP) has been established at the Virginia Institute of Marine Science Eastern Shore Laboratory (VIMS ESL) for the coastal environment near the Wachapreague lab. The goals of the initiative are to 1) provide status and trends information to scientists who study and regulators who manage Virginia’s marine resources, 2) provide a scientific context for short-term research and grant proposals 3) provide pedagogical enrichment for educators to use in their classes, and 4) build capacity in staff expertise and training of interns and students at VIMS ESL.

The program formalizes and standardizes data collection for a long-term …

Ecology And Conservation Of Diamondback Terrapins In Virginia, Cypress Ambrose

Undergraduate Honors Theses

The diamondback terrapin (Malaclemys terrapin) is the only turtle species native to North America with specific morphological and physiological adaptations to estuarine environments. Along with many other pressures contributing to population declines, terrapins frequently become trapped and drown as bycatch in crab pots used in the commercial and recreational blue crab (Callinectes sapidus) fishery. A wealth of evidence supports the use of inexpensive bycatch reduction devices (BRDs) that can be attached to the entrances of these traps, which leads to a marked decrease in terrapin bycatch while not reducing crab catch dramatically. Virginia is the only …

Transcriptional Dynamics During Rhodococcus Erythropolis Infection With Phage Wc1, Dana Willner, Sudip Paudel, Andrew D. Halleran, Grace E. Solini, Veronica Gray, Margaret Saha

Arts & Sciences Articles

Background

Belonging to the Actinobacteria phylum, members of the Rhodococcus genus thrive in soil, water, and even intracellularly. While most species are non-pathogenic, several cause respiratory disease in animals and, more rarely, in humans. Over 100 phages that infect Rhodococcus species have been isolated but despite their importance for Rhodococcus ecology and biotechnology applications, little is known regarding the molecular genetic interactions between phage and host during infection. To address this need, we report RNA-Seq analysis of a novel Rhodococcus erythopolis phage, WC1, analyzing both the phage and host transcriptome at various stages throughout the infection process.

Results

By five …

Dietary Shifts And The Need For Increased Sustainability Approaches In The Global Aquaculture Seafood System, Darien D. Mizuta

VIMS Articles

Recent shifts in the global dietary preferences have indicated the fast-growing choice for plant-based, or meat-reduced diets. Among the motivations for such choices, which are increasingly advocated by nations and environmental institutions, is the major concern with global environmental sustainability and impacts of food production systems. Incontestably, the animal food source industry is extremely diverse, and seafood production through the aquaculture value chain remains unfamiliar to key stakeholders possibly leading to an uncomprehensive view and often biased perception of the farming industry within the environmental context. Accordingly, I discuss the importance of seafood production systems, such as the fastest seafood …

The Status Of Virginia'a Public Oyster Resource 2023, Melissa Southworth, Roger L. Mann

Reports

No abstract provided.

Monitoring The Abundance Of American Shad And River Herring In Virginia's Rivers: 2023 Annual Report, Eric J. Hilton, Patrick E. Mcgrath, Ashleigh Magee, Timothy Hoyt

Reports

This report describes the results of the twenty-sixth year of a continuing study to estimate the relative abundance and assess the status of American shad (Alosa sapidissima) stocks in Virginia by monitoring the spawning runs in the James, York and Rappahannock rivers in spring 2023, evaluating hatchery programs, and contributing to coast-wide assessments (ASMFC 2007, ASMFC 2020). We also report on two fisheryindependent monitoring programs using anchor gillnets in the Rappahannock River (year 6) and a major tributary of the James River, the Chickahominy River (year 9), to determine relative abundance and stock structure for the adult spawning run of …

Considering Tidal Flooding To Provide A Holistic Approach To Nutrient Input Management, Mary Beth Armstrong

Dissertations, Theses, and Masters Projects

This report explores the integration of tidal flooding impacts into nutrient management frameworks for the Chesapeake Bay, a potentially large gap in current strategies. Coastal communities in the Chesapeake Bay, face an increasing threat from tidal flooding—also known as sunny-day flooding—which occurs without rainfall. In 2023, Norfolk, Virginia experienced 10 days of tidal flooding, but forecasts indicate that by 2075 the area could be experiencing tidal flooding every day. Recent research highlights that even a single tidal flooding event can introduce substantial nutrient loads into the Bay, sometimes exceeding the annual nutrient allocations. This significant increase in both the frequency …

The Helicobacter Pylori Methylome Is Acid-Responsive Due To Regulation By The Two-Component System Arsrs And The Type I Dna Methyltransferase Hsdm1 (Hp0463), Elise H. Zimmerman, Erin L. Ramsey, Katherine E. Hunter, Sarah M. Villadelgado, Celeste M. Phillips, Ryan T. Shipman, Mark H. Forsyth

Arts & Sciences Articles

In addition to its role in genome protection, DNA methylation can regulate gene expression. In this study, we characterized the impact of acidity, phase variation, and the ArsRS TCS on the expression of the Type I m6A DNA methyltransferase HsdM1 (HP0463) of Helicobacter pylori 26695 and their subsequent effects on the methylome. Transcription of hsdM1 increases at least fourfold in the absence of the sensory histidine kinase ArsS, the major acid-sensing protein of H. pylori. hsdM1 exists in the phase-variable operon hsdR1-hsdM1. Phase-locking hsdR1 (HP0464), the restriction endonuclease gene, has significant impacts on the transcription of hsdM1. To determine the …

Virulence And Transmission Of An Emergent Salmonid Virus After A Host Jump, Malina Loeher

Dissertations, Theses, and Masters Projects

In recent years, significant progress has been made toward understanding the complex interplay of viral traits that comprise overall viral fitness. In the wake of the COVID-19 pandemic, special attention has been paid to phenotypes correlated to viral genetics. Emergence of new pathogens and their genetic strains is frequently marked by changes in virulence, or morbidity and mortality inflicted upon the host organism. Virulence is theorized to be a possible fitness benefit to the pathogen if it positively correlates with transmission via pathogen shedding, but the consistency and strength of this relationship are unknown. Gaining a holistic understanding of fitness …

Policy Recommendations For Tire Additive 6ppd And Its Derivative 6ppd-Q, Ashley E. King

Dissertations, Theses, and Masters Projects

Around 3.1 billion tires are produced around the world annually1. The antioxidant additive, 6PPD (i.e., N-(1,3-dimethylbutyl)-N’-phenyl-p-phenylenediamine) is widely employed in passenger and commercial vehicle tires at 0.4-2% by mass to impede tire degradation2. Antioxidants are intended to migrate to tire surfaces and form protective films to prevent rubber oxidation. 6PPD is designed to react with oxidant species like ozone, intentionally forming chemical transformation products that can then escape from the tire and into the environment. 6PPD-Q (i.e., 2-anilino-5-[(4-methylpentan-2-yl)amino]cyclohexa-2,5-diene-1,4-dione) is one such transformation product.

After release and disbursement in the environment, 6PPD-Q is bioavailable to aquatic animals and mammals and acute …

Multi-Decadal Changes In Blue Crab Reproductive Ecology, Alexandra Kenyon Schneider

Dissertations, Theses, and Masters Projects

Commercial fisheries rely on resource managers to develop and enact fishing regulations that prevent stocks from collapsing. In Chesapeake Bay, the goal for blue crab management is to protect the spawning stock to encourage high levels of egg production and thus juvenile recruitment. Management actions to increase female abundance were implemented in the early 2000s, culminating in 2008, in response to an 84% decline in blue crab spawning stock biomass from 1992 to 2000. Blue crabs are the most valuable fishery in Chesapeake Bay and their decline necessitated severe management actions: the historic spawning sanctuary was expanded, the commercial winter …

Virginia Fishery Resource Grant Program: 2023, Karen Hudson, David Rudders

Reports

The Virginia Fishery Resource Grant Program (VFRGP) enables members of Virginia’s seafood industries to develop ideas to protect and enhance the Commonwealth’s coastal and marine resources. Since its inception in 1999, the annually funded program has supported 145 projects, two of which were approved to start in 2023. These projects enable members of seafood industries to pursue ideas for increasing efficiency and sustainability that will benefit the entire industry, without personally bearing the cost and high risk. The VFRGP is coordinated by the Virginia Institute of Marine Science, Marine Advisory Program (VIMS MAP), in partnership with Virginia Sea Grant Marine …

Mapping The Tidal Marshes Of Coastal Virginia: A Hierarchical Transfer Learning Approach, Zhonghui Lv, Karinna Nunez, Ethan Brewer, Daniel Runfola

Arts & Sciences Articles

Coastal wetlands, especially tidal marshes, play a crucial role in supporting ecosystems and slowing shoreline erosion. Accurate and cost-effective identification and classification of various marsh types, such as high and low marshes, are important for effective coastal management and conservation endeavors. However, mapping tidal marshes is challenging due to heterogeneous coastal vegetation and dynamic tidal influences. In this study, we employ a deep learning segmentation model to automate the identification and classification of tidal marsh communities in coastal Virginia, USA, using seasonal, publicly available satellite and aerial images. This study leverages the combined capabilities of Sentinel-2 and National Agriculture Imagery …

From Rain Drops To Rivers: Unraveling Aridification's Influence On Coastal Stream Ecosystem Dynamics, Sean Kelly Kinard

Dissertations, Theses, and Masters Projects

This dissertation addresses the escalating threat of aridification to global freshwater ecosystems due to anthropogenic climate change, focusing on South-Central Texas, USA, using a space-for-time approach along a precipitation gradient from semi-arid to sub-humid. Over the 2017-2020 survey period, I integrated community, stable isotope, climate, and hydrologic data.In Chapter 2, my initial assessment of fish and invertebrate communities along the precipitation gradient unveiled compositional shifts and other nuanced responses. Positive correlations between fish diversity and rainfall, coupled with unexpected invertebrate diversity patterns, underscored the role of water quality in shaping fish assemblages. Drier conditions imposed abiotic filters, reducing diversity and …

Evaluation Of Striped Bass Stocks In Virginia: Monitoring And Tagging Studies, 2023 Progress Report, Robert J. Latour, Christopher F. Bonzek, Gina M. Ralph, James Gartland

Reports

This report presents the results of striped bass (Morone saxatilis) tagging and monitoring activities in Virginia during the period 1 December 2022 through 30 November 2023. It includes an assessment of the biological characteristics of striped bass taken from the 2023 spring spawning run and estimates of annual survival and fishing mortality based on annual spring tagging. The information contained in this report is required by the Atlantic States Marine Fisheries Commission and is used to implement a coordinated management plan for striped bass in Virginia, and along the eastern seaboard.

Aquaculture Governance: Five Engagement Arenas For Sustainability Transformation, Darien D. Mizuta, Stefan Partelow

VIMS Articles

A greater focus on governance is needed to facilitate effective and substantive progress toward sustainability transformations in the aquaculture sector. Concerted governance efforts can help move the sector beyond fragmented technical questions associated with intensification and expansion, social and environmental impacts, and toward system-based approaches that address interconnected sustainability issues. Through a review and expert-elicitation process, we identify five engagement arenas to advance a governance agenda for aquaculture sustainability transformation: (1) setting sustainability transformation goals, (2) cross-sectoral linkages, (3) land–water–sea connectivity, (4) knowledge and innovation, and (5) value chains. We then outline the roles different actors and modes of …

Seasonal Trends In Lysogeny In An Appalachian Oak-Hickory Forest Soil, Melaina L. Jacoby, Graham D. Hogg, Madelein R. Assaad, Kurt E. Williamson

Arts & Sciences Articles

Since 1989, investigations into viral ecology have revealed how bacteriophages can influence microbial dynamics within ecosystems at global scales. Most of the information we know about temperate phages, which can integrate themselves into the host genome and remain dormant via a process called lysogeny, has come from research in aquatic ecosystems. Soil environments remain under-studied, and more research is necessary to fully understand the range of impacts phage infections have on the soil bacteria they infect. The aims of this study were to compare the efficacy of different prophage-inducing agents and to elucidate potential temporal trends in lysogeny within a …

Host Defense Peptide Piscidin And Yeast-Derived Glycolipid Exhibit Synergistic Antimicrobial Action Through Concerted Interactions With Membranes, Fei Liu, Alexander I. Greenwood, Yawei Xiong, Et Al., Myriam L. Cotten

Arts & Sciences Articles

Developing new antimicrobials as alternatives to conventional antibiotics has become an urgent race to eradicate drug-resistant bacteria and to save human lives. Conventionally, antimicrobial molecules are studied independently even though they can be cosecreted in vivo. In this research, we investigate two classes of naturally derived antimicrobials: sophorolipid (SL) esters as modified yeast-derived glycolipid biosurfactants that feature high biocompatibility and low production cost; piscidins, which are host defense peptides (HDPs) from fish. While HDPs such as piscidins target the membrane of pathogens, and thus result in low incidence of resistance, SLs are not well understood on a mechanistic level. Here, …

Design And Redesign Of A Bottom Trawl Survey In Chesapeake Bay, Usa, Robert J. Latour, James Gartland, Christopher F. Bonzek

VIMS Articles

Fisheries-independent surveys that reliably sample a broad size range of exploited and ecologically important species provide valuable data in support of fisheries management and ecosystem science. The operational consistency of surveys over time and space is fundamental to the interpretation of data in the contexts of population dynamics processes, community interactions, policy impacts, and environmental forcing. However, the need to maintain historic sampling protocols over extended time periods limits the utilization of new technologies that could lead to improved data collection. Survey vessel replacements also become inevitable as the maturity of sampling programs becomes multidecadal. This case study describes the …

Final Report An Assessment Of Sea Scallop Abundance And Distribution In The Nantucket Lightship Closed Area, Sally Roman, David Rudders

Reports

For the sea scallop, Placopecten magellanicus, the concepts of space and time have emerged as the basis of an effective management tool. The strategy of rotational area management has aided in the sustainability of the resource. Since 2003 with the adoption of Amendment 10 to the Fishery Management Plan (FMP), rotational area management has provided a mechanism to protect juvenile scallops from fishing mortality by closing areas based on scallop abundance and observed length distributions. Approximately half of the sea scallop industry’s current annual landings are attributed to areas under this rotational harvest strategy. While this represents a management success, …

Final Report An Assessment Of Sea Scallop Abundance And Distribution In The Georges Bank Access Areas And Surrounds, Sally Roman, David Rudders

Reports

For the sea scallop, Placopecten magellanicus, the concepts of space and time have emerged as the basis of an effective management tool. The strategy of rotational area management has aided in the sustainability of the resource. Since 2003 with the adoption of Amendment 10 to the Fishery Management Plan (FMP), rotational area management has provided a mechanism to protect juvenile scallops from fishing mortality by closing areas based on scallop abundance and observed length distributions. Approximately half of the sea scallop industry’s current annual landings are attributed to areas under this rotational harvest strategy. While this represents a management success, …

Final Report In Situ High-Definition Camera Monitoring To Evaluate Catch Efficiency And Performance Of A Survey Dredge, Sally Roman, Christopher Rillahan, David Rudders, Pingguo He

Reports

For the sea scallop, Placopecten magellanicus, the concepts of space and time have emerged as the basis of an effective management tool. The strategy of rotational access area management has gained support as a method to conserve and enhance the scallop resource. In the last decade, rotational area management has provided a mechanism to protect juvenile scallops from fishing mortality by closing areas based on scallop abundance and age distribution. Approximately half of the sea scallop industry’s current annual landings come from areas under this rotational harvest strategy. While this represents a management success, it also highlights the extent to …