Life Sciences Commons^™

Mimicking Biofilms: Photosynthetic Assessments Of C. Reinhardtii In 3 Physical Forms, John Michael Roesgen

Biology ETDs

Oxygenic photosynthesis supports the majority of life on Earth through the capture of energy from sunlight and the assimilation of CO₂ into basic building blocks of cells. Microalgae are fast growing and account for about half of global photosynthesis. In addition, they can be cultivated and their metabolism can be redirected to generate additional useful products ranging from biofuels to pharmaceuticals. However, the efficiency of metabolite production is severely impacted by the slow diffusion of CO₂ through water and the high energetic costs of harvesting microalgae from liquid cultures. Microalgae grow in open water, but they also form …

Effects Of Aging On Post-Exercise Oxygen Consumption: A Preliminary Study, Steven Klepacz

Health, Exercise, and Sports Sciences ETDs

Aging and excess post-exercise oxygen consumption (EPOC) is something that has not been adequately studied. Studies looking at EPOC mostly are compiled of young college age individuals. Aging in humans is a topic of much research with still more to be learned. The study in this paper attempts to answer the question of whether age affects EPOC when performing a certain exercise. Preliminary findings based on general age-related research suggest the possibility. This thesis will explore the current research related to age and EPOC, analyze the findings, and discuss additional avenues for future research.

Affective Liking Influences Reward Processing In Depression: A Computational Eeg Approach, Garima Singh

Psychology ETDs

Reinforcement learning (RL) enables agents to learn through interaction with their environment. This empowers individuals to optimize actions in complex and dynamic settings. The component of event related potential (ERP) termed as the Reward Positivity (RewP) evidently signifies a fundamental reward prediction error (RPE) associated with rewards. This characteristic implies that it represents a fundamental computational process in the assessment of RL. When a reward is particularly pleasurable or liked by an individual, it tends to elicit an amplified RewP signal, reflecting the heightened positive affect. RPE arises from disparities between anticipated and actual rewarding outcomes and is known to …

Investigation Of Orthohantavirus Genetics In Rodent Reservoirs And Clinical Samples, Samuel M Goodfellow

Biomedical Sciences ETDs

Orthohantaviruses are negative-sense, single stranded RNA viruses with trisegmented genomes that can cause severe disease in humans and are carried by several host reservoirs throughout the world. In the United States, Sin Nombre orthohantavirus (SNV) is the primary cause of hantavirus cardiopulmonary syndrome (HCPS) with a fatality rate of ~36% and the highest cases occuring in the southwest region. The primary SNV host reservoir is thought to be the western deer mouse, Peromyscus maniculatus, however it has been shown that other rodents can carry different orthohantaviruses. We designed a pan-orthohantavirus detection tool to survey several small mammal populations throughout New …

Determining The Existence And Regulation Of Microlipophagy In Primary Brown And White Adipocytes, Sara C. Arenas De Leon

Biomedical Sciences ETDs

Lipids are one of life’s four main macromolecules and provide essential functions to cells.

The degradation of lipid droplets and mobilization of lipids occurs through lipolysis. Emerging evidence demonstrates evidence of a selective form of autophagy in lipolysis. The process of microlipophagy has only recently been described, and many features of its regulation are still poorly understood. Our recent study showed that inhibiting mammalian target of rapamycin complex 1 (mTORC1) pathway by depletion of Raptor in adipocytes led to an influx of lysosomes and accumulation of lipid droplets within lysosome. Here, we expand on these previous findings. We were able …

Effects Of Acute And Chronic Gut Injury On Secretory Lineage Differentiation, Roger Atanga

Biomedical Sciences ETDs

Acute and chronic injury to the gut has several detrimental consequences. However, dysregulation of secretory lineage cells is a common observation. To model acute gut injury, we use non-fissile uranium bearing dust (UBD), an environmental toxicant prevalent in communities adjacent abandoned uranium mines, majority of which are located in the Southwestern United States. Repeated exposure to environmental toxins and heavy metals has been obscurely linked to intestinal inflammation, increased susceptibility to pathogen-induced diseases, and higher incidences of colorectal cancer. However, there is no molecular evidence that non-fissile uranium can cause damage to the intestinal epithelia. Human colonoids exposed to UBD …

Evidence Of Competitive Release Following Overstory Mortality In A Semi-Arid Piñon-Juniper Woodland, Corrie D. Gonzalez

Biology ETDs

Extreme temperatures and severe drought events have led to widespread tree mortality worldwide. In semi-arid regions of the Southwest United States, these events pose a significant threat to piñon-juniper (PJ) woodlands. We studied the effects of piñon and juniper mortality on the growth and physiology of existing saplings in PJ woodlands by analyzing water status, photosynthetic activity, and tissue chemistry to gain insights into these impacts. Juniper saplings exhibited improved water status and water use efficiency in response to overstory mortality, whereas piñon saplings did not. Additionally, both piñon and juniper saplings exhibited increased photosynthetic rates, increased photosynthetic capacity, and …

Diversification By Dispersal Out Of The Andes Revealed By A Newly Discovered Hummingbird Clade, The ‘True Brilliants’, Marialejandra Castro-Farías

Biology ETDs

We identified a novel clade with striking biogeographic implications. Unsampled genera, Hylonympha and Sternoclyta, were found to be close to the genus Heliodoxa within the Brilliants. Heliodoxa tend to occur in lower montane habitats, such as the tropical, upper tropical, and subtropical elevational zones of the Andes and the Neotropics. Analysis of geographic and elevational zones showed that genus Heliodoxa and related genera diversified by out-of-Andes dispersal to mountain ranges of Central America, coastal Venezuela, the Pantepui, and southeastern Brazil, since the mid-Miocene. Within the Brilliants, reductions in elevation preceded these geographic expansions. Secondary colonization of the lowlands from …

An Investigation Of Freshwater Turtle Ecology Using Stable Isotopes, Jonathan Duran

Biology ETDs

In 2022 I investigated niche partitioning among native and invasive freshwater turtles across three sites in the Middle Rio Grande using bulk stable isotope analysis. I found high degrees of niche partitioning at sites in which Red-eared sliders (Trachemys scripta) have yet to establish. However, at sites in which red-eared sliders are now the most abundant species they overlapped greatly in isotopic niche with all native turtles, in particular the painted turtle (Chrysemys picta). Using these same techniques, I then examined the trophic interactions between red-eared sliders and their acanthocephalan parasites. My results suggest that acanthocephalans …

Thermoregulation In Nocturnal Volant Endotherms Occupying Hot Deserts, William A. Talbot

Biology ETDs

ABSTRACT

The study of thermoregulation is of growing concern in this era of rapid climate change. Earlier studies such as those pioneered by Scholander and Bartholomew directed focus toward the study of endotherm survival in conditions of cold weather adversity. As techniques evolved in the measurement of parameters quantifying thermoregulation, metabolism and energy allocation, the standardization procedures has increased the comparability of data from diverse taxa.

We can now search historical records and current research for explanations to the changes in the distribution, migration, extirpation or survival of animal and plant populations through time. It is increasingly common to observe …

Resolving The Paradox Of Polyploidy: Underexplored Facets Of Polyploid Plants, Benjamin Gerstner

Biology ETDs

Polyploidy, or whole genome duplication, is a common phenomenon in plants, but the establishment and persistence of mixed-ploidy populations remains a paradox. This dissertation explores factors that contribute to the persistence and establishment of mixed-ploidy populations in nature. The first chapter investigates the role of unreduced gametes in neopolyploid establishment and finds that variability in their formation rate can have a significant impact on polyploid establishment and persistence. The second chapter searches for evidence of soil microbes exhibiting ploidy-specificity, a pre-condition for microbe-mediated niche differentiation, a possible stabilizing mechanism contributing to ploidy coexistence. Finally, the third chapter tests for microbe-mediated …

Post-Fire Plant Community Response In Subalpine Mixed Conifer Forest, Sasha Escamilla

Biology ETDs

Increased wildfire activity may lead to significant shifts in vegetation dynamics in high elevation mixed conifer forests. These changes raise concerns about the resilience of forests following wildfire, prompting the need for a deeper understanding of post-fire plant community response. We analyzed up to 11 years of post-fire vegetation data from Valles Caldera National Preserve in northern New Mexico to determine how burned vegetation sites were recovering following high severity wildfire, and whether or not plant communities were transitioning to montane grassland. We found burned understory herbaceous communities were not transitioning into distinctive montane grasslands and were instead recovering to …

The Third Domain Of T Cells In The Evolution Of Novel Immune Cell Types, Kimberly Anne Morrissey

Biology ETDs

ABSTRACT αβ and γδ T cells play an essential role in the adaptive immune response and are present in the majority of jawed vertebrates. The T cell receptor (TCR) structure and genetic organization have been generally stable throughout 400 million years of gnathostome evolution. However, the TCRδ chain has displayed degrees of plasticity unseen in other TCR isoforms. One such form appears to be a chimera of a TCR chain with an antibody-like binding domain, known as VHδ and has been found a wide array of vertebrates including cartilaginous fish, coelacanths, amphibians, tuataras, birds, crocodilians, and monotreme mammals. Another, more …

Investigating The Costs And Benefits Of A Nutritional Fungal Endosymbiont, Nolan L. Perryman

Biology ETDs

Research on insect symbiosis is dominated by insect–bacteria models, however, the role of fungal symbionts in insects is poorly understood. Fungi are de novo synthesizers of many essential nutrients, therefore, insect–fungal pairings can permit specialization on nutritionally deprived diets. Here, I address the costs and benefits of symbiosis using a system of beetle–fungal symbiosis. Specifically, I ask 1) when reared on a low-quality diet, does the beetle increase the number of viable symbionts to compensate for a heightened nutritional demand, and 2) Is the conferred fitness benefit of the symbiont only present in low-quality diets? When reared on low-quality diets, …

Phylogeographic History Of The Leaf-Eared Mouse, Phyllotis Xanthopygus Complex, Tabitha R. Mcfarland

Biology ETDs

Museum collections provide essential biodiversity sampling needed to understand the species limits, phylogeny, and biogeographic history of mammals, all key features of the foundation for comparative analyses in ecology and evolution. We add to this framework a diverse assemblage of species of leaf-eared mice (genus Phyllotis) in South America and then focus on the Phyllotis xanthopygus complex by combining available mitochondrial sequence (cytochrome b; cytb) data (351 GenBank samples) with 52 newly sequenced museum samples from the northern extent of this complex’s range (51 from Bolivia and 1 from northern Chile) to reconstruct evolutionary relationships using maximum …

Assessing Ecological Relationships Among Late Triassic Vertebrates In Petrified Forest National Park, Alexandra Davis Apgar

Earth and Planetary Sciences ETDs

The complex vertebrate ecosystem of the Late Triassic has not yet been fully understood, largely due to oversimplification of hypothesized trophic hierarchies and limited preservation of direct evidence of faunal interaction. Paleocommunity reconstruction attempts can also fall victim to taphonomic biases, time-averaging inaccuracies, and non-analogue paleoecologies. Utilizing a combination of PAIRS analysis and NMDS ordination, we highlight vertebrate faunal relationships within the Adamanian and Revueltian faunachrons of Petrified Forest National Park, assess the likelihood that these patterns have ecological rather than preservational drivers, and examine how these potential interactions may have been impacted by the Adamanian-Revueltian turnover event. We are …

Social Tolerance, Cooperation, And Constraint Shape Differentiated Social Relationships In Female Chimpanzees, Stephanie Fox

Anthropology ETDs

In this dissertation, I investigate variables that promote and constrain female-female social relationships in chimpanzees, a species where females disperse at sexual maturity, reside primarily among non-kin as adults, and where fission fusion social structure can reveal how female social behavior responds to different social contexts. I conducted my research using a combination of detailed behavioural data that I collected during a one-year field season (2019-2020) and long-term data (2010-2019) collected by the Kibale Chimpanzee Project. I show that female chimpanzees form stable, differentiated social relationships, which reflect active preferences and variation in social tolerance (Chapter 2); females leverage these …

Determining The Existence And Regulation Of Microlipophagy In Primary Brown And White Adipocytes, Sara C. Arenas De Leon

Biomedical Sciences ETDs

Lipids are one of life’s four main macromolecules and provide essential functions to cells, as they serve as building blocks of cellular membranes, mediate cell signaling, and are a critical energy source. Within cells, esterified fatty acids aggregate into lipid droplets in the form of triglycerides, consisting of a neutral lipid core surrounded by a phospholipid monolayer decorated with various proteins.

The degradation of lipid droplets and mobilization of lipids occurs through lipolysis, a process that hydrolyzes a molecule of triglyceride into a glycerol and three fatty acids. Emerging evidence demonstrates the involvement of a selective form of autophagy in …

Antimicrobial Activity And Mechanism Of Amyloid Proteins And Synthetic Conjugated Polyelectrolytes, Fahimeh Maghsoodi

Nanoscience and Microsystems ETDs

Although the exact cause of Alzheimer’s disease (AD) is still unknown, it is widely considered that the accumulation of amyloid plaques composed of the amyloid-β (Aβ) peptide in the brain is linked to neurodegeneration. Co-localization of viral DNA with Aβ plaques, the association of brain infection and AD, and research indicating the protective effect of Aβ against bacteria and fungi in mice and human cells have led to the hypothesis that Aβ expression and deposition may be central to its function as an antimicrobial peptide (AMP). In my thesis research, we seek to elucidate how Aβ functions as an AMP …

Neuroinflammatory And Metabolomic Temporal Dynamics From Inhaled Wildfire Smoke With Attenuation Via Pharmacological Intervention, David Scieszka, David Scieszka

Biomedical Sciences ETDs

Wildfire smoke is a global issue affecting nearly all humans on the surface of this Earth. Smoke dispersion from wildfires can span continents and cross oceans with amazing ease. Furthermore, total acres of land burned per year in the United States has roughly doubled since 1980, meaning this issue will persist for an indeterminate amount of time. Exposure to wildfire smoke is hazardous and promotes aging-associated events in the cardiopulmonary systems. Yet long- and short-term effects on the brain remain relatively unknown. From these, it is critically important to understand the neurological impacts from wildfire smoke exposure; to compare these …

Vi Energy-Efficient Memristor-Based Neuromorphic Computing Circuits And Systems For Radiation Detection Applications, Jorge Iván Canales Verdial

Electrical and Computer Engineering ETDs

Radionuclide spectroscopic sensor data is analyzed with minimal power consumption through the use of neuromorphic computing architectures. Memristor crossbars are harnessed as the computational substrate in this non-conventional computing platform and integrated with CMOS-based neurons to mimic the computational dynamics observed in the mammalian brain’s visual cortex. Functional prototypes using spiking sparse locally competitive approximations are presented. The architectures are evaluated for classification accuracy and energy efficiency. The proposed systems achieve a 90% true positive accuracy with a high-resolution detector and 86% with a low-resolution detector.

Multi-Factor Disturbance Regimes Drive Soil Fungal Community Composition Across A Southwestern Us Riparian Cottonwood Landscape, Rich Wagner

Biology ETDs

In southwestern US riparian cottonwood forests, anthropogenic changes have replaced the structuring force of seasonal flooding with novel multi-factor disturbance regimes, driving these ecosystems to new states. While the impetus for restoration is high, little attention has been paid to understanding belowground feedbacks from these new drivers. Using high-throughput sequencing of environmental DNA, we compared the impacts of fires, exotic plants, restoration practices and lower levels of disturbance on soil fungal community composition and diversity across a riparian cottonwood landscape in New Mexico. We focused on mycorrhizal fungi for the benefits they may confer upon cottonwoods. We found that along …

Ecological Impacts Of Invasive Crayfish In A Naïve Riparian System, Gregor L. Hamilton

Biology ETDs

Aquatic and riparian food webs are inextricably linked. In deserts, they provide critical energy subsidies to surrounding terrestrial food webs, but these vital subsidies are not guaranteed; streams in arid lands are especially sensitive to perturbations. In this dissertation, I investigated the role of an oft-cited threat to stream communities in the lower Colorado River basin: non-native crayfish. I contributed to methodologies in passive integrated transponder use and length-weight relationships in crayfish to aid future research. I leveraged stable isotope analysis of δ¹⁵N, δ¹³C, and δ²H to understand crayfish role in the food webs. …

Transcriptional Silencing Of Cdk18 And Its Role In Lung Carcinogenesis Of Brg1-Mutant Lung Cancers, Loryn M. Phillips

Biology ETDs

BRG1 is mutated in 10% of lung cancers, making this mutation clinically relevant. The downstream effects of BRG1 included significantly affecting the cell cycle control and chromosomal replication pathway. CDK18, a cyclin-dependent kinase, was determined to be the gene with significantly decreased expression (p

Ontogeny Of Sleeping Behaviour In Four Solitary Species Of Anolis Lizards, Joseph C. Barnett, Steven Poe

Biology ETDs

Despite the nearly ubiquitous nature of sleep in the animal kingdom, behavioural research on sleep has focused on a few model organisms and widespread behaviours studied in artificial laboratory settings. In this study, we examine the ontogeny of sleeping perch selection in four closely related species of arboreal lizard in situ. The study species each occupy similar habitats and share "solitary" ecology wherein potential lizard competitors are absent, thus providing four partially independent replicates with which to test hypotheses. We find that structural niche, analysed as perch height, varies by age and sex. Males sleep higher than females and adults …

Toward The Yeast Surface Display Of Microviridin B, Jillian Leigh Stafford

Chemistry and Chemical Biology ETDs

Humans have turned to natural products for medicinal therapeutics for millennia. In recent years, the ribosomally synthesized and post-translationally modified peptide (RiPP) class of natural products have garnered a lot of attention due to their ability for heterologous expression, relative ease of mutation, and vast biological activates. Microviridins are a family of RiPPs that contain a tricyclic cage-like structure through the formation of two lactone rings and one lactam ring catalyzed by two ATP-grasp ligase family enzymes. Microviridins are potent inhibitors of serine proteases and mutational studies of a small number of residues indicates the potential of peptide engineering protease …

[Research Note] The Random Somatic Mutation Is Not Quite Random, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This research note challenges the idea that Random Somatic Mutations are entirely random, highlighting their non-equiprobable nature and their influence on evolution, involution, or indeterminacy. It recalls the Neutrosophic Theory of Evolution, extending Darwin’s theory, and emphasizes the importance of distinguishing between different senses of “random mutation” in evolutionary theory.

Neutrosophic Superhyperalgebra And New Types Of Topologies, Florentin Smarandache, Memet Sahin, Derya Bakbak, Vakkas Uluçay, Abdullah Kargı

Branch Mathematics and Statistics Faculty and Staff Publications

In general, a system S (that may be a company, association, institution, society, country, etc.) is formed by sub-systems Si { or P(S), the powerset of S }, and each sub-system Si is formed by sub-sub-systems Sij { or P(P(S)) = P^2(S) } and so on.

That’s why the n-th PowerSet of a Set S { defined recursively and denoted by P^n(S) = P(P^(n-1)(S) } was introduced, to better describes the organization of people, beings, objects etc. in our real world.

The n-th PowerSet was used in defining the SuperHyperOperation, SuperHyperAxiom, and their corresponding Neutrosophic SuperHyperOperation, Neutrosophic SuperHyperAxiom in order …

Applying Data Science And Machine Learning To Understand Health Care Transition For Adolescents And Emerging Adults With Special Health Care Needs, Lisamarie Turk

Nursing ETDs

A problem of classification places adolescents and emerging adults with special health care needs among the most at risk for poor or life-threatening health outcomes. This preliminary proof-of-concept study was conducted to determine if phenotypes of health care transition (HCT) for this vulnerable population could be established. Such phenotypes could support development of future studies that require data classifications as input. Mining of electronic health record data and cluster analysis were implemented to identify phenotypes. Subsequently, a machine learning concept model was developed for predicting acute care and medical condition severity. Three clusters were identified and described (Cluster 1, n …

Heat Stressed Exercise Elicits Shifts In Cooling Strategies Across Body Mass In Tropical Songbirds, Kristen Dee Oliver

Biology ETDs

In resting animals, water use positively correlates with metabolic rate, for example smaller animals using proportionally more water per gram of body mass. However, animals also must endure heat and exertion, and evaporative cooling requires additional water use that may not scale similarly with body size. How evaporative water loss allometrically scales with body mass during heat-stressed exercise is poorly resolved, particularly for birds, yet is critically important for understanding the consequences of climate warming on the fitness of bird populations. Here, we evaluated how air temperature (T_a) influenced evaporative water loss during exercise (EWL_exercise) across …