Life Sciences Commons^™

Estimating Daily Growth Of Age-0 Channel Catfish In A Free-Flowing, Commercially Exploited Midwestern River, Kaleb B. Wood

Masters Theses

The larval stage in fishes is an important stage in the life history, as their survival dictates the ability of the population to sustain itself as an adult population. While there is a plethora of information available for juvenile and adult life stages of Channel Catfish (Ictalurus punctatus), very little is understood about their larval life stage. This study sought to determine overall density, growth rates, and size structure of cohorts of age-0 Channel Catfish during a study year on the Wabash River. In 2018, I sampled age-0 Channel Catfish using a benthic trawl from May to September. …

Low-Head Dam Removal Increases Functional Diversity Of Stream Fish Assemblages, Adam Christopher Jones

Masters Theses

Despite the growing number of dam removals to date, very few have been studied to understand their impacts on stream fish communities. Despite being the most common type of dam in the U.S., an even smaller proportion of studies focus on the impacts of low-head dam removals, instead, focusing on the impacts of removal of larger dams. In this study, two previously impounded Illinois rivers were monitored to assess the impacts of low-head dam removal on the functional assemblage of stream fishes. This was accomplished by aggregating fishes into habitat and reproductive guilds, relating community changes to habitat, environmental metrics, …

Effects Of Wastewater Effluent On Fish Fin Morphology Of Larval Fathead Minnows (Pimephales Promelas) And Swimming Performance Of Smallmouth Buffalo (Ictiobus Bubalus), Seth Michael Bogue

Masters Theses

The Sangamon River flows across central Illinois and is mostly free flowing except in the city of Decatur where it is impounded to form Lake Decatur. The Sanitary District of Decatur (SDD) is located approximately three miles downstream of the Lake Decatur dam. For a significant portion of the year, the stretch of the Sangamon River downstream of SDD is dominated by effluent due to limited discharge from the Lake Decatur dam. This has resulted in heavy nutrient loading, most notably phosphorus, and elevated levels of nickel and other compounds in the downstream section of the river. Smallmouth buffalo ( …

Effects Of Emerging Contaminants On Centrarchidae And Catostomidae In Midwestern Rivers: A Multiple Biomarker Approach, Camden Garret Nix

Masters Theses

Natural habitats of fish are gradually declining due to land use and pollution caused by industrial wastes, intensive agriculture and contamination from sewage systems. The United States has 14,780 wastewater treatment facilities that discharge effluent into navigable waters, and in some cases these discharge waters represent a considerable proportion of the water system flow. These activities make it critical to discern the effects of pollutants that are entering our waterways at a consistent rate, such as 17β-estradiol (E2) and nickel, on aquatic organisms. To determine the effects of 17β-estradiol on endocrine disruption in fish, Bluegill Sunfish (Lepomis macrochirus) …

Exploration Of Sonic Hedgehog Gene Expression In Fathead Minnows (Pimephales Promelas), Brooke Renee Greiner

Undergraduate Honors Theses

Pollutants, as a result of wastewater treatments, have been shown to have negative impacts on aquatic ecosystems. To better understand the possible consequences caused by effluents on ecosystems, it is important to examine ecotoxicology data. One of the most commonly used species for water quality testing is the fathead minnow, Pimephales promelas. Ecotoxicology can then be taken one step further to understand the effects of pollutants on a molecular level. Previous research had identified effluents as causes for abnormal minnow fin morphology. In order to collect additional data on development, tanks with fathead minnows were placed at the Charleston …

Assessment And Recovery Of Stream Restoration Efforts On Fish Communities, Jessica Marie Rohr

Masters Theses

Aquatic systems are subjected to disturbances of various types, including natural and anthropogenic, or can deteriorate due to accumulating unfavorable conditions, including receding banks, decreasing riparian vegetation, and disrupted flow patterns. An analysis was done on a variety of streams in central Illinois that experienced one or multiple anthropogenic disturbances without remediation to determine the natural recovery dynamics of each system. A separate analysis was performed on a multi-site restored stream with a complex restoration project with a variety of restoration methods. This data were collected over at periods of time spanning from 5-15 years, including time prior to disturbance/restoration …

Impact Of Temperature Increase On Freshwater Fish Species: Energetics And Muscle Mechanics Of Two Centrarchids, Israt Jahan

Masters Theses

Fishes have evolved physiologically to live within a specific range of environmental variation and existence outside of that range can be stressful or fatal. These ranges can coincide for fishes that evolved in similar habitats. This study investigates physiological processes limiting thermal tolerance, specifically how changes in water temperature affect the swimming energetics and muscle mechanics in largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus). I focused on the impact of temperature change at the muscle level in these two species and the capacity to adapt to rapid changes in the environment. Fish were housed at …

The North American River Otter (Lontra Canadensis) On The Department Of Energy's Savannah River Site, Emily B. Mccallen

Masters Theses

The Department of Energy's (DOE) Savannah River Site (SRS) faces a legacy of radionuclide and metal contamination from industrial processes that occurred within the site. The risks posed to ecosystems on the site from contaminants are quantified using the ecological risk assessment process, which often uses the health of a particular species as an ecological endpoint. Northern river otters (Lontra canadensis) are appropriate receptors for studying the effects of long-term, low-level contamination because they are long-lived, higher trophic level organisms likely to accumulate high levels of pollutants. However, little information about river otters on the SRS is known; …

Stopover Ecology Of Neotropical Migratory Songbirds In The Northern Yucatan Peninsula, Mexico, Lauren E. Solomon

Masters Theses

Chapter I. Full-service hotels, convenience stores or fire escapes? Evaluating function of stopover sites for Neotropical migrants in the northern Yucatan Peninsula

Nearctic-Neotropical migratory songbirds incur the highest mortality rates during their annual migrations. Migratory songbirds use a network of stopover sites to rest, refuel, or seek refuge during times of poor weather conditions; and the time and energy expended at these sites exceeds that of migratory flight. In order to conserve stopover sites with the highest value to Neotropical migrants, a conceptual framework was developed to classify stop over sites into three functional categories based on their function for …

Low-Head Dams On Habitat, Fish Functional Guilds And Genetic Structuring In A Midwestern River System, Shannon Cassandra Frary Smith

Masters Theses

The natural flow regime of the majority of rivers in the United States has been altered by anthropogenic structures. This loss of connectivity plays a strong role in shaping river ecosystems by altering physical habitat characteristics and shaping fish community assemblages. Although the impacts of large dams on river systems are well documented and often easy to observe, there are fewer studies on the effects of smaller low-head dams. Additionally, the influences of low-head dams on the genetic structuring of small-bodied riverine fishes have yet to be fully explored. I assessed the effects of two low-head dams on the Vermilion …

Effects Of Habitat Alteration On Ecomorphology Of Fish Communities In A Restored Stream, Carl Anthony Favata

Masters Theses

Decades of anthropogenic pressure have devastated lotic ecosystems across the riverscapes of North America, resulting in degradation of critical habitat and contributing to sharp declines in biotic integrity. In response, local stream restoration projects have increased in frequency. However, little effort has been allocated to monitoring and project success has been limited. In addition, restoration projects typically focus on ecological effects above the population-level, while relationships with physiological processes are seldom assessed. Lessons from the long-term restoration and ecological monitoring of Kickapoo Creek highlight some of the complex dynamics driving reach-scale restoration projects. Following instream restoration, I predicted that alterations …

Successional Changes In Leaf Nutrient Concentrations Of Woody And Herbaceous Species, Daniel Walter Kuchta

Masters Theses

Leaf nutrient concentrations are an example of a functional trait, a trait that can be used to understand community dynamics by observing how plants interact with their environment. I explored how leaf nutrient concentrations were affected over successional time by environmental changes. The majority of prior research on functional traits focuses on either woody or herbaceous species, but not both life forms simultaneously. To address this, I also explored the successional changes to leaf nutrient concentrations, separating the plant community into woody and herbaceous species.

Healthy, mature leaves were taken from 122 taxa of woody and herbaceous species in a …

The Functional Role Of Leaf Nutrients In An Old-Field Successional Community, Kirstin I. Duffin

Masters Theses

In functional ecology, traits that capture aspects of plant performance are used to understand how organisms interact with their environment. Leaf nutrients are an example of a functional trait that directly links to plant metabolic processes and therefore may describe plant assemblage dynamics. Multivariate leaf nutrient analyses may be used with other functional traits to understand ecological strategies because they are a direct measure of leaf metabolic processes and can describe nuances in plant allocation patterns. In this thesis, I explored (1) whether a suite of leaf nutrients (carbon, nitrogen, phosphorus, potassium, calcium, and magnesium) was related to plant growth …

Effects Of Instream Habitat Restoration On Macroinvertebrate And Fish Communities In A Small Midwestern Stream, Manisha Pant

Masters Theses

Although millions of dollars are spent annually on stream habitat restoration, the biological responses to these restorations are rarely monitored. I assessed the impact of habitat enhancement on fish and macroinvertebrate abundance and diversity in a small Midwestern stream. Fish and macroinvertebrate communities were sampled annually in two restored and two unrestored sites beginning two years before and continuing four years after restoration. Habitat heterogeneity increased in the restored sites following the restoration, but there were no significant changes in most macroinvertebrate and fish community indices. Macroinvertebrate composition was significantly different between spring and fall, but in general, assemblages within …

Habitat Associations Of Larval And Juvenile Fishes In A Large Unimpounded River, Sharon V. Rayford

Masters Theses

Larval and juvenile life stages of fish are numerically the dominant component of fish populations. These early life stages experience high levels of mortality due, in part, to anthropogenic disturbances, but little is known about which habitats they utilize in large-rivers, as they are often difficult to sample and identify. My study examined the larval and juvenile fish assemblages in different habitats within the lower 322 km of the Wabash River. Fish were sampled with a conical-cylindrical ichthyoplankton net (larvae) and a DC-electrified mini-Missouri trawl (juveniles) between May and October 2013. Larval fish were collected every two weeks from mid-May …

Effects Of Dams On Fish And Macroinvertebrate Communities In The Vermilion River, Il, Ryan Patrick Hastings

Masters Theses

Dams are a main source of anthropogenic disturbances on river systems and can affect rivers in a variety of ways. Dams have the ability to change rivers from lotic to lentic habitats, affect sediment transportation, connectivity, water quality, linkages with wetlands and the quality of in-stream and riparian habitats. The Danville Dam was constructed in 1914 on the Vermilion River in Danville, Illinois and is becoming a safety hazard for human recreation on the Vermilion River, resulting in three deaths in the last 10 years. The Illinois Department of Natural Resources in conjunction with the city of Danville has proposed …

Do Artificial Riffles Enhance Nutrient Retention In Restored Streams?, Adam Thomas Hughes

Masters Theses

Kickapoo Creek, a tributary of the Embarrass River in Central Illinois, has undergone a stream restoration that included the construction of two artificial riffles. These structures were designed to slow flood waters, increase channel and substrate stability, and increase habitat heterogeneity in a stream impacted by erosion and sediment deposition. They may also provide stable substrates that affect the algal community, leading to shifts in algal community composition, increases in the biomass of primary producers, and subsequent increases in nutrient retention. I explored the effects of the restoration on instream nutrient retention by measuring and comparing phosphate uptake lengths, velocities, …

Taking The Road Most Travelled: Understanding Patterns Of Snake (Colubridae; Storeria) Movement And Road Mortality In A State Park, Iwo P. Gross

Undergraduate Honors Theses

No abstract provided.

Short-Term Responses Of Fish Assemblages To Habitat Restoration In A Small Midwestern Stream, John Leon West

Masters Theses

Recent efforts to restore stream habitat have become a common practice, yet evaluations of biotic responses to these practices are not as common. I evaluated fish assemblage response to restoration in a reach of Kickapoo Creek, a fourth order stream southwest of Charleston, Illinois. Restoration included 446 meters of bank stabilization, pool scouring keys, and the creation of two artificial riffles. To have a representation of pre-restoration fish assemblages, I sampled four stream reaches of Kickapoo Creek twice before construction of habitat restoration: two control reaches (upstream and downstream) and two restored reaches within a 0.5 km restoration stretch (upstream …

A Sketch-Based Language For Representing Uncertainty In The Locations Of Origin Of Herbarium Specimens, Barry J. Kronenfeld, Andrew Weeks

Barry J. Kronenfeld

Uncertainty fields have been suggested as an appropriate model for retrospective georeferencing of herbarium specimens. Previous work has focused only on automated data capture methods, but techniques for manual data specification may be able to harness human spatial cognition skills to quickly interpret complex spatial propositions. This paper develops a formal modeling language by which location uncertainty fields can be derived from manually sketched features. The language consists of low-level specification of critical probability isolines from which a surface can be uniquely derived, and high-level specification of features and predicates from which low-level isolines can be derived. In a case …

A Sketch-Based Language For Representing Uncertainty In The Locations Of Origin Of Herbarium Specimens, Barry J. Kronenfeld, Andrew Weeks

Faculty Research and Creative Activity

Uncertainty fields have been suggested as an appropriate model for retrospective georeferencing of herbarium specimens. Previous work has focused only on automated data capture methods, but techniques for manual data specification may be able to harness human spatial cognition skills to quickly interpret complex spatial propositions. This paper develops a formal modeling language by which location uncertainty fields can be derived from manually sketched features. The language consists of low-level specification of critical probability isolines from which a surface can be uniquely derived, and high-level specification of features and predicates from which low-level isolines can be derived. In a case …

A Sketch-Based Language For Representing Uncertainty In The Locations Of Origin Of Herbarium Specimens, Barry Kronenfeld, Andrew Weeks

Faculty Research and Creative Activity

Uncertainty fields have been suggested as an appropriate model for retrospective georeferencing of herbarium specimens. Previous work has focused only on automated data capture methods, but techniques for manual data specification may be able to harness human spatial cognition skills to quickly interpret complex spatial propositions. This paper develops a formal modeling language by which location uncertainty fields can be derived from manually sketched features. The language consists of low-level specification of critical probability isolines from which a surface can be uniquely derived, and high-level specification of features and predicates from which low-level isolines can be derived. In a case …

Variation In Surrounding Forest Habitat Influences The Initial Orientation Of Juvenile Amphibians Emigrating From Breeding Ponds, Leroy J. Walston, Stephen J. Mullin

Faculty Research & Creative Activity

No abstract provided.

Using Dragonflies As Common, Flexible, And Charismatic Subjects For Teaching The Scientific Process, Paul Switzer

Paul V. Switzer

No abstract provided.

The Effect Of Male And Female Body Size On Mating Behavior Of Male Fairy Shrimp, Eubranchipus Neglectus, Craig Feigenbaum, Paul V. Switzer

Paul V. Switzer

We studied size-related mating patterns in the freshwater fairy shrimp Eubranchipus neglectus in the laboratory. Males were provided with relatively small or large females that they could only sense by vision. We recorded the number of times a male pursued the female (“follows”), the duration of these follows, and the number of times a male attempted to grasp the female. Relatively large males performed more mating behavior than relatively small males. Furthermore, males (regardless of their own size) exhibited more mating behavior towards large than small females. They followed large females more frequently, attempted to grasp large females more often, …

Using Dragonflies As Common, Flexible, And Charismatic Subjects For Teaching The Scientific Process, Paul Switzer

Faculty Research & Creative Activity

No abstract provided.

The Effect Of Male And Female Body Size On Mating Behavior Of Male Fairy Shrimp, Eubranchipus Neglectus, Craig Feigenbaum, Paul Switzer

Faculty Research & Creative Activity

We studied size-related mating patterns in the freshwater fairy shrimp Eubranchipus neglectus in the laboratory. Males were provided with relatively small or large females that they could only sense by vision. We recorded the number of times a male pursued the female (“follows”), the duration of these follows, and the number of times a male attempted to grasp the female. Relatively large males performed more mating behavior than relatively small males. Furthermore, males (regardless of their own size) exhibited more mating behavior towards large than small females. They followed large females more frequently, attempted to grasp large females more often, …

The Effect Of Male And Female Body Size On Mating Behavior Of Male Fairy Shrimp, Eubranchipus Neglectus, Craig Feigenbaum, Paul V. Switzer

Faculty Research & Creative Activity

We studied size-related mating patterns in the freshwater fairy shrimp Eubranchipus neglectus in the laboratory. Males were provided with relatively small or large females that they could only sense by vision. We recorded the number of times a male pursued the female (“follows”), the duration of these follows, and the number of times a male attempted to grasp the female. Relatively large males performed more mating behavior than relatively small males. Furthermore, males (regardless of their own size) exhibited more mating behavior towards large than small females. They followed large females more frequently, attempted to grasp large females more often, …

Using Dragonflies As Common, Flexible, And Charismatic Subjects For Teaching The Scientific Process, Paul Switzer

Faculty Research & Creative Activity

No abstract provided.

An Ecosystem-Based Approach To Management: Using Individual Behaviour To Predict The Indirect Effects Of Antarctic Krill Fisheries On Penguin Foraging, Suzanne H. Alonzo, Paul Switzer, Marc Mangel

Paul V. Switzer

Summary 1. Changes in species' abundance and distributions caused by human disturbances can have indirect effects on other species in a community. Although ecosystem approaches to management are becoming increasingly prevalent, they require a fuller understand- ing of how individual behaviour determines interactions within and between species. 2. Ecological interactions involving krill are of major importance to many species within the Antarctic. Despite extensive knowledge of the ecosystem that they occupy, there is still incomplete understanding of the links between species and the effect of environmental conditions on these interactions. In this study, we extended a behavioural model used previously …