Life Sciences Commons^™

Using Detection Dogs And Rspf Models To Assess Habitat Suitability For Bears In Greater Yellowstone, Jon P. Beckmann, Lisette P. Waits, Aimee Hurt, Alice Whitelaw, Scott Bergen

Western North American Naturalist

In the northern U.S. Rockies, including the Greater Yellowstone Ecosystem (GYE), connectivity is a concern because large carnivores have difficulties dispersing successfully between protected areas. One area of high conservation value because of its importance for connecting the GYE to wilderness areas of central Idaho is the Centennial Mountains and surrounding valleys (2500 km2) along the Idaho–Montana border just west of Yellowstone National Park. The current expansion of grizzly bears (Ursus arctos) and other large carnivore populations outside protected areas of Yellowstone National Park and Grand Teton National Park has placed a greater emphasis on potential linkage zones …

Evidence Of Ancient Maya Agriculture In The Bajos Surrounding Tikal, Guatemala, Adam Calvin Parker

Theses and Dissertations

Current Central American agricultural practices are environmentally and economically unsustainable, yet the ancient Maya who lived in the same region thrived for thousands of years. Archaeologists have attempted to understand the factors enabling the prolonged success and ultimate collapse of the Maya societies. Some have proposed that the karst seasonal wetlands, called bajos, that border many Maya sites in the region were an influential factor in the Maya's ability to flourish. For the past decade, researchers have used carbon isotope analyses to identify areas of ancient maize agriculture at Maya archaeological sites. In this study, we collected soil samples from …

Maternal Denning Phenology And Substrate Selection Of Polar Bears (Ursus Maritimus) In The Southern Beaufort And Chukchi Seas, Jay Wesley Olson

Theses and Dissertations

Loss of sea ice due to global warming may affect the phenology and distribution of polar bear (Ursus maritimus) denning by altering access to denning habitats. We examined trends in the selection of maternal denning substrate (land versus sea-ice denning) in the southern Beaufort Sea (SB), addressing the potential influence of summer land-use and fall sea-ice conditions on substrate selection. We developed an algorithm based on statistical process control methods to remotely identify denning bears and estimate denning phenology from temperature sensor data collected on collars deployed 1985–2013 in the SB and Chukchi Sea (CS). We evaluated cub …

Control Of Alternaria Solani Resistance To Boscalid, Fluopyram, And Chlorothalonil, Andrew K. Hollingshead

Theses and Dissertations

Alternaria solani, cause of early blight, threatens potato yields. Fungicide resistance has made control of early blight difficult and there are concerns that in-season fungicide use results in resistance to boscalid, fluopyram, and chlorothalonil. Concern of high levels of resistance to boscalid a group 7 fungicide may confer cross-resistance to fungicides of the same group such as fluopyram. From 2014 to 2015, A. solani isolates were collected from field plots treated with boscalid, fluopyram, and chlorothalonil to test resistance levels. Isolates were determined resistant if EC50 values were higher than 5 µg ml-1. Boscalid and chlorothalonil mean EC50 values decreased …

Mountain Big Sagebrush (Artemisia Tridentata Ssp Vaseyana) Seed Production, Melissa L. Landeen

Theses and Dissertations

Big sagebrush (Artemisia tridentata Nutt.) is the most widespread and common shrub in the sagebrush biome of western North America. Of the three most common subspecies of big sagebrush (Artemisia tridentata), mountain big sagebrush (ssp. vaseyana; MBS) is the most resilient to disturbance, but still requires favorable climactic conditions and a viable post-fire seedbank for successful unassisted recovery. This study was designed to assess MBS seed production throughout post-fire recovery. We performed 2 pilot studies to develop methods for estimating seed production and plant age. The results of the pilot studies and a space-for-time substitution strategy were used to measure …

Mating-Type Locus Characterization And Variation In Pyrenophora Semeniperda, Julie Leanna Henry

Theses and Dissertations

Pyrenophora semeniperda is a generalist fungal pathogen that occurs primarily on monocot seed hosts. It is in the phylum Ascomycota, which includes both self-compatible (homothallic) and self-incompatible (heterothallic) species. Homothallic fungal species contain complementary mating-type (MAT) idiomorphs in a single unikaryotic strain, while heterothallic strains contain a single MAT idiomorph requiring interaction between strains of complementary mating-types for sexual reproduction to occur. Because the majority of P. semeniperda strains contained either MAT1 or MAT2, this species was provisionally categorized as heterothallic. However, many strains contain both MAT idiomorphs and appear to be homothallic. These results warranted a closer look at …

Drought And Nitrogen Effects On Maize Canopy Temperature And Stress Indices, David A. Carroll

Theses and Dissertations

Increased water scarcity due to changing climate, population growth, and economic development is a major threat to the sustainability of irrigated agriculture in the Western United States and other regions around the world. Management practices, such as controlled deficit irrigation, that seek to maximize the productivity of a limited water supply are critical. When using controlled deficit irrigation, remote sensing of crop canopy temperature is a useful tool for assessing crop water status and for more precise irrigation management. However, there is potential that nutrient deficiencies could compound the interpretation of water status from leaf temperature by altering leaf color …

Clonal Integration And Ramet Development In Quaking Aspen, Anson Call, Dr. Samuel St. Clair

Journal of Undergraduate Research

Clonal plants are important contributors to natural environments and can have disproportionate effects on ecosystem function. In the mountain west, the clonal species Populus tremuloides (quaking aspen) is critical in helping to regulate ecosystem function; healthy aspen stands support a diverse group of plants and animals. Aspen are in decline across the west, due to climate change (increased drought), changing fire cycles, and increasing pressure from herbivores like deer and elk. Understanding the natural processes that enable aspen to survive and grow will help us protect aspen in the future. Clonality, or the ability to reproduce asexually through root suckering, …

Effect Of Harvester Ants On Invasive And Native Plant Establishment On Disturbed Sites In Rush Valley, Utah, Amy Clark, Samuel B. St. Clair

Journal of Undergraduate Research

Invasive species pose a serious threat to earth’s ecosystems. This is a problem especially in the arid west where millions of acres of Great Basin shrubland have become dominated by invasive weeds such as cheatgrass and halogeton following disturbances like fire. Both of these invasive species lower the quality of the range by making it difficult for more desirable, native plants to become established. It has been shown that ant communities can be used to evaluate ecological response to disturbances in rangelands (Hoffman 2010). While there have been studies on the effect of fire on harvester ant communities (Suazo et …

The Amaranth (Amaranthus Hypochondriacus) Genome: Genome, Transcriptome And Physical Map Assembly, Jared William Clouse

Student Works

Amaranthus hypochondriacus is an emerging pseudo-cereal native to the New World which has garnered increased attention in recent years due to its nutritional quality, in particular its seed protein, and more specifically its high levels of the essential amino acid lysine. It belongs to the Amaranthaceae family, is an ancient paleotetraploid that shows amphidiploid inheritance (2n=32), and has an estimated genome size of 466 Mb. Here we present a high-quality draft genome sequence of the grain amaranth A. hypochondriacus. The genome assembly consisted of 377 Mb in 3,518 scaffolds with an N50 of 371 kb. Repetitive element analysis predicted that …

The Amaranth (Amaranthus Hypochondriacus) Genome: Genome, Transcriptome And Physical Map Assembly, Jared William Clouse

Theses and Dissertations

Amaranthus hypochondriacus is an emerging pseudo-cereal native to the New World which has garnered increased attention in recent years due to its nutritional quality, in particular its seed protein, and more specifically its high levels of the essential amino acid lysine. It belongs to the Amaranthaceae family, is an ancient paleotetraploid that shows amphidiploid inheritance (2n=32), and has an estimated genome size of 466 Mb. Here we present a high-quality draft genome sequence of the grain amaranth A. hypochondriacus. The genome assembly consisted of 377 Mb in 3,518 scaffolds with an N50 of 371 kb. Repetitive element analysis predicted that …

Genetic Variation Within Cotton Tissues, Kimberly Clemons, Dr. Joshua Udall

Journal of Undergraduate Research

The purpose of the copy number variation (CNV) project was to determine if there is a variation in the DNA content between tissue types of Gossypium hirsutum and Gossympium barbadense. Specifically if the cotton fiber cells contain CNV that contribute to the increased output of cellulose and other proteins that promote its rapid elongation.

Biological Control Of Agrilus Liragus Through Entomopathogenic Fungi, John Watkins

Journal of Undergraduate Research

This project was funded with the intent that possible biological controls could be found to control the population explosions of bark boring beetles. We hypothesized that due to the prevalence of beetle outbreaks in the West, we would find enough Agrilus liragus specimens to culture native entomopathogenic fungi. We hoped to sequence that fungi and hypothesized that there would be new species of pathogenic fungi that is specific to Agrilus liragus. Through our fieldwork we were not able to find sufficient numbers of Agrilus liragus to accomplish these goals. What we did find were high levels of the tree …

Biological Control Of Agrilus Liragus Through Entomopathogenic Fungi, John Watkins

Journal of Undergraduate Research

This project was funded with the intent that possible biological controls could be found to control the population explosions of bark boring beetles. We hypothesized that due to the prevalence of beetle outbreaks in the West, we would find enough Agrilus liragus specimens to culture native entomopathogenic fungi. We hoped to sequence that fungi and hypothesized that there would be new species of pathogenic fungi that is specific to Agrilus liragus. Through our fieldwork we were not able to find sufficient numbers of Agrilus liragus to accomplish these goals. What we did find were high levels of the tree …

Metabolic Transformational Effects Of Endosymbionts On Withanolides Of Datura Wrightii, Trevor Smart, Brad Geary

Journal of Undergraduate Research

Recent research has been published determining the presence of anticancerous withanolides in the plant Datura wrightii. These withanolides have been found to be antiproliferative towards cancers such as breast cancer, gliobastoma, and head and neck cell carcinoma [1,2]. There also have even been some studies showing withanolide potential for neuritic and synaptic regeneration. These withanolides, which are oxygenated C-28 steroid hydrocarbons, are undergoing further research from Datura wrightii, but the associated endosymbionts of Datura wrightii are yet to be the subject of current studies. Endosymbionts, being fungi living within the plant, have commonly been found to produce either the …

Tree Islands Of Fertility Structure Bacterial Community Assembly And Functional Genes Contributing To Ecosystem Processes, Tayte Paul Campbell

Theses and Dissertations

In arid and semi-arid ecosystems, dominant tree species create dramatic mosaics of plant islands of fertility and relatively barren plant interspaces that exert immense pressure on ecosystem processes and offers an ideal opportunity to explore the impact of bacterial communities. We evaluated potential links between soil respiration and N mineralization, and community co-occurrence networks and predicted gene function across three tree island microsites (i.e., beneath tree canopies, at the canopy edge, and in interspaces) in a replicated field experiment in thirty-eight woodlands sites in the Great Basin Desert in UT, USA. Additionally, we potentially intensified the effects of tree islands …

Mentored Student Research In The Study Of Ancient Maize Agriculture In Mesoamerica, Richard E. Terry

Journal of Undergraduate Research

For the past two years, Richard Terry, his graduate students, Zachary Larsen and Jacob Horlacher have mentored twenty two undergraduate majors in Environmental Science in the collecting, preparation, and analysis of soil samples from the rural surroundings of ancient Maya cities in Guatemala and Mexico. Corn (called maize in Mesoamerica) has been very important to both the ancient and contemporary Maya. The Maya creation story as recorded in the Popol Vuh tells of the creation of man from the ground maize. Many of the Maya view themselves as “people of the maize”. The actions of planting the seeds, harvesting, preparation …

Cultivating An Undergraduate Mentoring Research Environment By Characterizing The Population Genetics, Reproduction Biology, And Native Distribution Of A Putative Keystone Species, Agave Utahensis (Utah Agave), In The Mojave Desert And Colorado Plateau, J. Ryan Stewart

Journal of Undergraduate Research

• Evaluation of how well the academic objectives of the proposal were met
• Evaluation of the mentoring environment
• List of students who participated and what academic deliverables they have produced or it is anticipated they will produce
• Description of the results/findings of the project
• Description of how the budget was spent

Consequences Of Invasive Grass-Fire Cycles On Plant-Pollinator Relationships In Utah Deserts, Sam St. Clair

Journal of Undergraduate Research

We successfully completed the studies as outlined in the proposal and the data collected has been written up a in a successfully defended MS thesis with two chapters.

A Utah Flora, Fifth Edition, Revised, Stanley L. Welsh, N. Duane Atwood, Sherel Goodrich, Larry C. Higgins

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

This is a revised version of a comprehensive treatment of the vascular flora of Utah. All new taxa and distributional records discovered since the publication of the second edition in 2003 are included.

Keys are provided to families, genera, species, and infraspecific taxa (when present). Taxa are described, ecological data is given, and geographical information is provided. County distribution in Utah is given for each species and infraspecific taxon. General geographical information is given for taxa that extend beyond the boundaries of Utah. Chromosome numbers are provided for each taxon, where that information was available in literature.

In the …

Mesa Verde Vegetal Survey, Stanley L. Welsh

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

This write-up is mainly concerned with plant specimens recovered and examined from major prehistoric cliff dwellings being excavated during the Wetherill Mesa Project. It also includes anecdotes from the author’s experiences in Mesa Verde. An overall summary of the species identified is presented at the end of this work, including suggestions as to how plants may have been used based on modern Native American surveys.

Table of Contents

Preface

Prologue

Introduction

Wetherill Mesa

Climate

Collections

Identification

Modern Plant Assemblage

Contemporary Species Compliment

Archeological Plant Assemblage

Plant Species Recovering from the Major Ruins

Kinds of Plant Materials Recovered

Wood-worked Items …