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Full-Text Articles in Life Sciences

Triangulation And Finite Element Method For A Variational Problem Inspired By Medical Imaging, Tim Komperda, Enrico Au-Yeung Aug 2021

Triangulation And Finite Element Method For A Variational Problem Inspired By Medical Imaging, Tim Komperda, Enrico Au-Yeung

DePaul Discoveries

We implement the finite element method to solve a variational problem that is inspired by medical imaging. In our application, the domain of the image does not need to be a rectangle and can contain a cavity in the middle. The standard approach to solve a variational problem involves formulating the problem as a partial differential equation. Instead, we solve the variational problem directly, using only techniques available to anyone familiar with vector calculus. As part of the computation, we also explore how triangulation is a useful tool in the process.


Correlation Effects On Intramolecular C-H...Oh And O-H...O Hydrogen Bond Interactions In Azelaic Acid: An Ab Initio Study, Sabina Kalata, Alina Huang, Ruben Parra Aug 2021

Correlation Effects On Intramolecular C-H...Oh And O-H...O Hydrogen Bond Interactions In Azelaic Acid: An Ab Initio Study, Sabina Kalata, Alina Huang, Ruben Parra

DePaul Discoveries

Electron correlation effects on both conventional, O-H…O, and nonconventional, C-H…O, intramolecular hydrogen bonds present in a selected azelaic acid folded conformation were evaluated ab initio using HF and MP2 methodologies. The relative strength of the hydrogen bonds was examined through different indicators derived from geometry, vibrational frequencies, and electron density along the hydrogen bond path. The HF method results in weaker O-H…O and C-H…O hydrogen bonds when compared with the corresponding results using the MP2 method. Additionally, the stability of the folded azelaic conformation is found to depend on the level of theory used. Accordingly, the zero-point corrected energies of …


High Altitude Ballooning As A Platform For Measuring Ozone Uptake Over Agricultural Landscapes, Thomas Sykora, Mark Potosnak Aug 2021

High Altitude Ballooning As A Platform For Measuring Ozone Uptake Over Agricultural Landscapes, Thomas Sykora, Mark Potosnak

DePaul Discoveries

Measuring plant health is a key aspect in maximizing crop outputs. One often overlooked risk to crop fields is damage caused by stomatal ozone uptake; measuring this uptake is an important tool in understanding crop losses. Traditional methods for measuring plant ozone uptake are prohibitively expensive and rely on equipment that cannot easily be moved. Here, we propose high-altitude weather ballooning as a cost-effective alternative for measuring ozone uptake on a regional (~10 km) spatial scale. Ozonesounde data was obtained with weather balloons launched from the National Oceanic and Atmospheric Administration research station in Boulder, Colorado. This data was then …


Interspersed Denuded Zone (Idz): How Patchy Leaf Litter Dynamics In A Buckthorn-Invaded Urban Woodland Can Affect Microarthropod Species Richness, Angela Stenberg Aug 2021

Interspersed Denuded Zone (Idz): How Patchy Leaf Litter Dynamics In A Buckthorn-Invaded Urban Woodland Can Affect Microarthropod Species Richness, Angela Stenberg

DePaul Discoveries

Biodiversity loss may serve as a key diagnostic of the Anthropocene. An important driver of this loss is by means of invasive species. In this study of a forest preserve in Chicago, Illinois we examined Interspersed Denuded Zones (IDZs for short), which are areas of patchy leaf litter in invaded forests caused in this case by the rapid decomposition of litter from buckthorn (Rhamnus cathartica). We characterized the leaf litter mass in IDZs and enumerated litter-inhabiting microarthropod populations. We found that plots of high buckthorn density are associated with IDZs: there was significantly less leaf litter mass in …


Population Structure Analysis Of The Endangered Oak Quercus Brandegeei, Carolyn Brinckwirth Aug 2021

Population Structure Analysis Of The Endangered Oak Quercus Brandegeei, Carolyn Brinckwirth

DePaul Discoveries

As humans continue to impact landscapes and ecosystems throughout the entire world, many plant and animal species have faced major changes in their environments. The rare endemic oak, Quercus brandegeei, is one such endangered species located in the Sierra La Laguna mountains of Baja California Sur, Mexico. This tree occurs solely on the ephemeral riverbeds of the mountains, which are inundated seasonally by hurricane waters. It is important to understand the fundamental characteristics, like spatial distribution, of Q. brandegeei in order to develop restorative management practices to protect this tree against extinction. Determining the geographic distribution of a species …


Modeling Reproduction Influencers Of An Endangered Oak, Camila Cortez Aug 2021

Modeling Reproduction Influencers Of An Endangered Oak, Camila Cortez

DePaul Discoveries

The endemic oak, Quercus brandegeei has been labeled as endangered by the IUCN Red List of Endangered Species due to its limited genetic diversity and lack of regeneration. The oak (Quercus) species is a keystone species in many parts of the world and has been facing various challenges to their survival (Westwood 2017) making efforts to support and protect endemic oaks all the more ecologically and socially imperative. There are challenges to identifying threats as there are many unknown characteristics of Q. brandegeei’s biology that are essential to carrying out conservation efforts. To develop a greater understanding of …


Insignificant Impacts Of Covid-19 Stay-At-Home Orders On Chicago Air Quality, Adam W.T. Steffeck Aug 2021

Insignificant Impacts Of Covid-19 Stay-At-Home Orders On Chicago Air Quality, Adam W.T. Steffeck

DePaul Discoveries

With the onset of the COVID-19 pandemic, reports of air quality improvements around the world resulting from the stay-at-home orders were widespread. However, for Chicago, no significant air quality improvements occurred despite large reductions in private vehicle transportation due to the lack of commuters. The city of Chicago is a nexus for long-haul transportation by trucks and trains, which did not decrease during the pandemic. These transportation sources use mostly diesel fuel engines and emit NOX, a precursor to tropospheric ozone, and PM2.5, both of which are harmful air pollutants. Using open access EPA air quality …


Depaul Discoveries Volume 10 Cover Art, Nicolette Listenbee Aug 2021

Depaul Discoveries Volume 10 Cover Art, Nicolette Listenbee

DePaul Discoveries

No abstract provided.


Spring 2021 May 2021

Spring 2021

Scientia

From the Dean: A Decade of Purpose and Progress; Lab Notes: Alumna Wins Gordon Bell Special Prize, New Scholarships, Vaccination Site Volunteers; Women in Science Lecture, National Institutes of Health Grants, "Unequal Cities" Research; All Hands on Deck: Inspired pandemic approaches showcase interdisciplinary acumen in action; Unlocking Potential: Christopher Beasley thinks psychology is key to academic transformation for the formerly incarcerated; Puzzle Master: Bridget Tenner goes to pieces solving problems in cutting-edge mathematics