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Articles 1 - 18 of 18
Full-Text Articles in Life Sciences
The Fine-Scale Habitat Use Of Risso’S Dolphins Off Bardsey Island, Cardigan Bay (Uk), Marijke N. De Boer, Sonja Eisfeld, Mark P. Simmonds
The Fine-Scale Habitat Use Of Risso’S Dolphins Off Bardsey Island, Cardigan Bay (Uk), Marijke N. De Boer, Sonja Eisfeld, Mark P. Simmonds
Mark P. Simmonds, OBE
The main objectives of this study were (1) to estimate the population size of Risso’s dolphins off Bardsey Island using mark-recapture techniques (De Boer et al., 2013); and (2) to study habitat-use in relation to fine-scale oceanographic features. This work provides preliminary information on the habitat-use of Risso’s dolphins and will benefit future studies, along with the development of effective conservation measures for this species throughout the region.
A Coastal Companion: A Year In The Gulf Of Maine, From Cape Cod To Canada, Catherine Schmitt
A Coastal Companion: A Year In The Gulf Of Maine, From Cape Cod To Canada, Catherine Schmitt
Catherine Schmitt
A Coastal Companion is a journey through the year in the Gulf of Maine and its watershed, which includes land from eastern Massachusetts to southwestern Nova Scotia. A chronicle of changes through the seasons both above and within the sea, A Coastal Companion follows the arrival and departure of migrating shorebirds in spring and fall, schools of fish as they move in and out of our region, and the natural cycles of our bays, rivers, marshes, and coastal forests. Part field guide, part almanac, the book also highlights writers, artists, and scientists who have chosen the Gulf of Maine as …
Infectious Necrotizing Enteritis And Mortality Caused By Vibrio Carachariae In Summer Flounder Paralichthys Dentatus During Intensive Culture, Bruno Soffientino, Todd Gwaltney, David R. Nelson, Jennifer L. Specker, Michael Mauel, Marta Gomez-Chiarri
Infectious Necrotizing Enteritis And Mortality Caused By Vibrio Carachariae In Summer Flounder Paralichthys Dentatus During Intensive Culture, Bruno Soffientino, Todd Gwaltney, David R. Nelson, Jennifer L. Specker, Michael Mauel, Marta Gomez-Chiarri
David R. Nelson
An epizootic causing mortality among cultured summer flounder Paralichthys dentatus occurred in summer of 1998 at a land-based facility on Narragansett Bay, Rhode Island, USA. The disease, flounder infectious necrotizing enteritis (FINE), was characterized by reddening around the anal area, distended abdomens filled with opaque serosanguineous fluid, enteritis and necrosis of the posterior intestine. In extreme cases of the disease, the posterior intestine was detached from the anus and was observed coming out the vent. The intestine of individuals that recovered from the dsease ended in a blind-sac; the abdomens of these fish were distended, due to food and water …
Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant
Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant
David A. Bengtson
The elemental composition of otoliths may provide valuable information for establishing connectivity between fish nursery grounds and adult fish populations. Concentrations of Rb, Mg, Ca, Mn, Sr, Na, K, Sr, Pb, and Ba were determined by using solution-based inductively coupled plasma mass spectrometry in otoliths of young-of-the year tautog (Tautoga onitis) captured in nursery areas along the Rhode Island coast during two consecutive years. Stable oxygen (δ18O) and carbon (δ13C) isotopic ratios in young-of-the year otoliths were also analyzed with isotope ratio mass spectrometry. Chemical sig natures dif fered sig nif icantly among the distinct nurseries within Narragansett Bay and …
Evolutionary Adaptation Of Marine Zooplankton To Global Change, Hans Dam
Evolutionary Adaptation Of Marine Zooplankton To Global Change, Hans Dam
Hans G. Dam
Predicting the response of the biota to global change remains a formidable endeavor. Zooplankton face challenges related to global warming, ocean acidification, the proliferation of toxic algal blooms, and increasing pollution, eutrophication, and hypoxia. They can respond to these changes by phenotypic plasticity or genetic adaptation. Using the concept of the evolution of reaction norms, I address how adaptive responses can be unequivocally discerned from phenotypic plasticity. To date, relatively few zooplankton studies have been designed for such a purpose. As case studies, I review the evidence for zooplankton adaptation to toxic algal blooms, hypoxia, and climate change. Predicting the …
Evaluation Of The In Situ Ichthyoplankton Imaging System (Isiis): Comparison With The Traditional (Bongo Net) Sampler, Robert K. Cowen, Adam T. Greer, Cedric M. Guigand, Jonathan A. Hare, David E. Richardson, Harvey J. Walsh
Evaluation Of The In Situ Ichthyoplankton Imaging System (Isiis): Comparison With The Traditional (Bongo Net) Sampler, Robert K. Cowen, Adam T. Greer, Cedric M. Guigand, Jonathan A. Hare, David E. Richardson, Harvey J. Walsh
Adam T. Greer
Plankton and larval fish sampling programs often are limited by a balance between sampling frequency (for precision) and costs. Advancements in sampling techniques hold the potential to add considerable efficiency and, therefore, add sampling frequency to improve precision. We compare a newly developed plankton imaging system, In Situ Ichthyoplankton Imaging System (ISIIS), with a bongo sampler, which is a traditional plankton sampling gear developed in the 1960s. Comparative sampling was conducted along 2 transects ~30–40 km long. Over 2 days, we completed 36 ISIIS tow-yo undulations and 11 bongo oblique tows, each from the surface to within 10 m of …
Survival Of Eastern Oysters Crassostrea Virginica From Three Lines Following Experimental Challenge With Bacterial Pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, Marta Gomez-Chiarri
Survival Of Eastern Oysters Crassostrea Virginica From Three Lines Following Experimental Challenge With Bacterial Pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, Marta Gomez-Chiarri
Marta Gomez-Chiarri
Shellfish production is often affected by bacterial pathogens that cause high losses in hatcheries and nurseries. We evaluated the relative survival of larvae and juveniles of 3 Crassostrea virginica oyster lines: (1) GHP, a Rhode Island line; (2) NEHY, a line resistant to dermo and multinucleated sphere X diseases; and (3) FLOWERS, a line resistant to Roseovarius oyster disease, experimental challenge with Vibrio spp. isolates RE22 and RE101, causative agents of bacillary necrosis in Pacific oyster larvae, and the type strain of Roseovarius crassostreae, causative agent of Roseovarius oyster disease. All of the isolates were able to induce significant mortalities …
Infectious Necrotizing Enteritis And Mortality Caused By Vibrio Carachariae In Summer Flounder Paralichthys Dentatus During Intensive Culture, Bruno Soffientino, Todd Gwaltney, David R. Nelson, Jennifer L. Specker, Michael Mauel, Marta Gomez-Chiarri
Infectious Necrotizing Enteritis And Mortality Caused By Vibrio Carachariae In Summer Flounder Paralichthys Dentatus During Intensive Culture, Bruno Soffientino, Todd Gwaltney, David R. Nelson, Jennifer L. Specker, Michael Mauel, Marta Gomez-Chiarri
Marta Gomez-Chiarri
An epizootic causing mortality among cultured summer flounder Paralichthys dentatus occurred in summer of 1998 at a land-based facility on Narragansett Bay, Rhode Island, USA. The disease, flounder infectious necrotizing enteritis (FINE), was characterized by reddening around the anal area, distended abdomens filled with opaque serosanguineous fluid, enteritis and necrosis of the posterior intestine. In extreme cases of the disease, the posterior intestine was detached from the anus and was observed coming out the vent. The intestine of individuals that recovered from the dsease ended in a blind-sac; the abdomens of these fish were distended, due to food and water …
Small Scale Changes In Zooplankton Community In Relation To Stratification And Phytoplankton Thin Layers, Adam T. Greer
Small Scale Changes In Zooplankton Community In Relation To Stratification And Phytoplankton Thin Layers, Adam T. Greer
Adam T. Greer
Gelatinous zooplankton represent a poorly understood component of marine food webs in part because of difficulties estimating abundance using traditional net sampling techniques. The degree of vertical patchiness can influence the trophic impact of jellies, and the biophysical drivers of their distributions remain unknown. Using a towed In Situ Ichthyoplankton Imaging System (ISIIS), we examined the changes in jelly distributions during upwelling and relaxation events in Monterey Bay, CA. Sampling began at the end of a 12 d stretch of upwelling favorable winds. The first day of sampling was marked by a thin layer of high chlorophyll fluorescence and intense …
Niche Of Harmful Alga Aureococcus Anophagefferens Revealed Through Ecogenomics, Christopher Gobler, Dianna Berry, Sonya Dyhrman, Steven Wilhelm
Niche Of Harmful Alga Aureococcus Anophagefferens Revealed Through Ecogenomics, Christopher Gobler, Dianna Berry, Sonya Dyhrman, Steven Wilhelm
Steven Wilhelm
Harmful algal blooms (HABs) cause significant economic and ecological damage worldwide. Despite considerable efforts, a comprehensive understanding of the factors that promote these blooms has been lacking, because the biochemical pathways that facilitate their dominance relative to other phytoplankton within specific environments have not been identified. Here, biogeochemical measurements showed that the harmful alga Aureococcus anophagefferens outcompeted co-occurring phytoplankton in estuaries with elevated levels of dissolved organic matter and turbidity and low levels of dissolved inorganic nitrogen. We subsequently sequenced the genome of A. anophagefferens and compared its gene complement with those of six competing phytoplankton species identified through metaproteomics. …
Determining Rates Of Virus Production In Aquatic Systems By The Virus Reduction Approach,, M.G. Weinbauer, J.M. Rowe, Steven Wilhelm
Determining Rates Of Virus Production In Aquatic Systems By The Virus Reduction Approach,, M.G. Weinbauer, J.M. Rowe, Steven Wilhelm
Steven Wilhelm
The reduction approach to assess virus production and the prokaryotic mortality by viral lysis stops new infection by reducing total virus abundance (and thus virus–host contacts). This allows for easy enumeration of viruses that originate from lysis of already infected cells due to the decreased abundance of free virus particles. This reoccurrence can be quantified and used to assess production and cell lysis rates. Several modifications of the method are presented and compared. The approaches have great potential for elucidating trends in virus production rates as well as for making generalized estimates of the quantitative effects of viruses on marine …
The Construction And Analysis Of Marker Gene Libraries, S.M. Short, F. Chen, Steven Wilhelm
The Construction And Analysis Of Marker Gene Libraries, S.M. Short, F. Chen, Steven Wilhelm
Steven Wilhelm
Marker genes for viruses are typically amplified from aquatic samples to determine whether specific viruses are present in the sample, or to examine the diversity of a group of related viruses. In this chapter, we will provide an overview of common methods used to amplify, clone, sequence, and analyze virus marker genes, and will focus our discussion on viruses infecting algae, bacteria, and heterotrophic flagellates. Within this chapter, we endeavor to highlight critical aspects and components of these methods. To this end, instead of providing a detailed experimental protocol for each of the steps involved in examining virus marker gene …
Actinorhodopsin Genes Discovered Diverse In Freshwater Habitats And Among Cultivated Actinobacteria, A.K. Sharma, K. Sommerfeld, G.S. Bullerjahn, A.R. Matteson, Steven Wilhelm, J. Jezbera, U. Brandt, W.F. Doolittle, M.W. Hahn
Actinorhodopsin Genes Discovered Diverse In Freshwater Habitats And Among Cultivated Actinobacteria, A.K. Sharma, K. Sommerfeld, G.S. Bullerjahn, A.R. Matteson, Steven Wilhelm, J. Jezbera, U. Brandt, W.F. Doolittle, M.W. Hahn
Steven Wilhelm
Microbial rhodopsins are membrane proteins that utilize a retinal chromophore to harvest sunlight for energetic and photosensory functions. Recently, a group of novel rhodopsin sequences named ‘actinorhodopsins’ (ActRs) was hypothesized to exist among uncultured planktonic Actinobacteria. ActRs were discovered by mining metagenomic data obtained during the Venter Institute’s Global Ocean Sampling expedition, from a hypersaline lagoon, two estuaries and a freshwater lake. On the basis of these findings, and many studies that show Actinobacteria are common inhabitants of lakes, we predicted that ActR genes would likely be present in other freshwater habitats and among the genomes of cultivated Actinobacteria …
Identifying The Source Of Unknown Microcystin Genes And Predicting Microcystin Variants By Comparing Genes Within Uncultured Cyanobacterial Cells, C.J. Allender, G.R. Lecleir, J.M. Rinta-Kanto, R.L. Small, M.F. Satchwell, G.L. Boyer, Steven Wilhelm
Identifying The Source Of Unknown Microcystin Genes And Predicting Microcystin Variants By Comparing Genes Within Uncultured Cyanobacterial Cells, C.J. Allender, G.R. Lecleir, J.M. Rinta-Kanto, R.L. Small, M.F. Satchwell, G.L. Boyer, Steven Wilhelm
Steven Wilhelm
While multiple phylogenetic markers have been used in the culture independent study of microcystin producing cyanobacteria, in only a few instances have multiple markers been studied within individual cells, and in all cases these studies have been conducted with cultured isolates. Here, we isolate and evaluate large DNA fragments (> 6 kb) encompassing two genes involved in microcystin biosynthesis (mcyA2 and mcyB1) and use them to identify the source of gene fragments found in water samples. Further investigation of these gene loci from individual cyanobacterial cells allowed for improved analysis of the genetic diversity within microcystin producers as …
Distribution Of Calcifying And Silicifying Phytoplankton In Relation To Environmental And Biogeochemical Parameters During The Late Stages Of The 2005 North East Atlantic Spring Bloom, K. Leblanc, C.E. Hare, Y. Feng, G.M. Berg, G.R. Ditullio, A. Neeley, I. Benner, C. Sprengel, A. Beck, S.A. Sanudo-Wilhemy, U. Passow, K. Klinck, J.M. Rowe, Steven Wilhelm, C.W. Brown, D.A. Hutchins
Distribution Of Calcifying And Silicifying Phytoplankton In Relation To Environmental And Biogeochemical Parameters During The Late Stages Of The 2005 North East Atlantic Spring Bloom, K. Leblanc, C.E. Hare, Y. Feng, G.M. Berg, G.R. Ditullio, A. Neeley, I. Benner, C. Sprengel, A. Beck, S.A. Sanudo-Wilhemy, U. Passow, K. Klinck, J.M. Rowe, Steven Wilhelm, C.W. Brown, D.A. Hutchins
Steven Wilhelm
The late stage of the North East Atlantic (NEA) spring bloom was investigated during June 2005 along a transect section from 45 to 66° N between 15 and 20° W in order to characterize the contribution of siliceous and calcareous phytoplankton groups and describe their distribution in relation to environmental factors. We measured several biogeochemical parameters such as nutrients, surface trace metals, algal pigments, biogenic silica (BSi), particulate inorganic carbon (PIC) or calcium carbonate, particulate organic carbon, nitrogen and phosphorus (POC, PON and POP, respectively), as well as transparent exopolymer particles (TEP). Results were compared with other studies undertaken in …
The Effects Of Increased Pco2 And Temperature On The North Atlantic Spring Bloom: I. The Phytoplankton Community And Biogeochemical Response, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Y Zhang, G.R. Ditullio, P. Lee, Steven Wilhelm, J.M. Rowe, J. Sun, N. Nemcek, C. Gueguen, U. Passow, I. Benner, C. Brown, D.A. Hutchins
The Effects Of Increased Pco2 And Temperature On The North Atlantic Spring Bloom: I. The Phytoplankton Community And Biogeochemical Response, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Y Zhang, G.R. Ditullio, P. Lee, Steven Wilhelm, J.M. Rowe, J. Sun, N. Nemcek, C. Gueguen, U. Passow, I. Benner, C. Brown, D.A. Hutchins
Steven Wilhelm
ABSTRACT: The North Atlantic spring bloom is one of the largest annual biological events in the ocean, and is characterized by dominance transitions from siliceous (diatoms) to calcareous (coccolithophores) algal groups. To study the effects of future global change on these phytoplankton and the biogeochemical cycles they mediate, a shipboard continuous culture experiment (Ecostat) was conducted in June 2005 during this transition period. Four treatments were examined: (1) 12°C and 390 ppm CO2 (ambient control), (2) 12°C and 690 ppm CO2 (high pCO2), (3) 16°C and 390 ppm CO2 (high temperature), and (4) 16°C and …
Effects Of Increased Pco2 And Temperature On The North Atlantic Spring Bloom: Iii. Dimethylsulfoniopropionate, P.A. Lee, J.R. Rudisill, A.R. Neeley, D.A. Hutchins, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Steven Wilhelm, J.M. Rowe, G.R. Ditullio
Effects Of Increased Pco2 And Temperature On The North Atlantic Spring Bloom: Iii. Dimethylsulfoniopropionate, P.A. Lee, J.R. Rudisill, A.R. Neeley, D.A. Hutchins, Y. Feng, C.E. Hare, K. Leblanc, J.M. Rose, Steven Wilhelm, J.M. Rowe, G.R. Ditullio
Steven Wilhelm
The CLAW hypothesis argues that a negative feedback mechanism involving phytoplankton-derived dimethylsulfoniopropionate (DMSP) could mitigate increasing sea surface temperatures that result from global warming. DMSP is converted to the climatically active dimethylsulfide (DMS), which is transferred to the atmosphere and photochemically oxidized to sulfate aerosols, leading to increases in planetary albedo and cooling of the Earth’s atmosphere. A shipboard incubation experiment was conducted to investigate the effects of increased temperature and pCO2 on the algal community structure of the North Atlantic spring bloom and their subsequent impact on particulate and dissolved DMSP concentrations (DMSPp and DMSPd). Under …
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Ron Etter
Dramatic shifts in community composition occur between vertical and horizontal rocky surfaces in subtidal environments worldwide, yet the forces mediating this transition are poorly understood. Vertical rock walls are often covered by lush, diverse communities of sessile suspension-feeding invertebrates, while adjacent horizontal substrates are dominated by algae, or corals in the tropics. Multiple factors, including light, sedimentation, water flow, and predation have been proposed to explain this pattern, but experimental tests of these hypotheses are lacking. We manipulated light level and predation to test whether variation in these mechanisms could be responsible for the shift in composition of sessile communities …