Life Sciences Commons^™

Using Bayesian Multispecies Models To Evaluate Fish And Invertebrate Detection Probability And Distribution In The Hypersaline Bahia Grande Tidal Basin, Roy M. Ulibarri, Catherine M. Eckert, David Hicks, David Montagne, Brandon Jones, David R. Stewart

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Objective

In 2000, the Laguna Atascosa National Wildlife Refuge acquired the Bahia Grande (Texas) management unit, a space that had lain barren and arid for 70 years. A large cooperative partnership launched a restoration project to replenish the basin and recover its original tidal hydrology. In 2005, the construction of a pilot channel successfully restored water throughout the basin, and plans to eventually widen the channel were developed. Our study aims to evaluate an estuarine habitat restoration by assessing ecological drivers and the impacts on species diversity.

Methods

We evaluated species richness, detection/occupancy rates, and species–habitat relationships, and we estimated …

Length-Based Risk Analysis Of Management Options For The Southern Florida Usa Multispecies Coral Reef Fish Fishery, Jerald Ault, Steven G. Smith, Matthew W. Johnson, Laura Jay W. Grove, James A. Bohnsack, Gerard T. Dinardo, Caroline Mclaughlin, Nelson M. Ehrhardt, Vanessa Mcdonough, Michael P. Seki, Steven Miller, Jiangang Luo, Jeremiah Blondeau, Michael P. Crosby, Glenn Simpson, Mark E. Monaco, Clayton G. Pollock, Michael W. Feeley, Alejandro Acosta

Marine & Environmental Sciences Faculty Articles

Exploitation impacts and management options for 15 coral reef fish species central to the commercial and recreational fisheries of the southern Florida USA coral reef ecosystem were evaluated using a length-based risk analysis (LBRA) framework. Population abundance-at-length composition data were obtained from several regional federal-state sampling programs. These and updated life history demographic data were integrated into a length-based numerical cohort model to generate LBRA fishery sustainability metrics from a probabilistic perspective. Three of five groupers, eight of eight snappers, and two of two grunts were below the 40% spawning potential ratio (SPR) stock sustainability minimum; ten of these …

Ecological Risk Assessment For The Marine Aquarium Fish Resource, Kimberley Smith, Amelia Bissell, Carly Bruce

Fisheries research reports

In November 2021, the Department of Primary Industries and Regional Development convened an Ecological Risk Assessment (ERA) of the Western Australian fisheries that access the Marine Aquarium Fish Resource. ERAs are conducted by the Department as part of its Ecosystem-Based Fisheries Management framework. Outputs of this ERA will inform future versions of the Harvest Strategy for the Resource. Additionally, this ERA is a requirement of the Wildlife Trade Operation approval for the Marine Aquarium Fish Managed Fishery (MAFMF).

Ecological impacts of the MAFMF, which is the only commercial fishery that targets the Resource, and other extractive sectors that access the …

The Risk Of Multiple Anthropogenic And Climate Change Threats Must Be Considered For Continental Scale Conservation And Management Of Seagrass Habitat, Kathryn Mcmahon, Kieryn Kilminster, Robert Canto, Chris Roelfsema, Mitchell Lyons, Gary A. Kendrick, Michelle Waycott, James Udy

Research outputs 2022 to 2026

Globally marine-terrestrial interfaces are highly impacted due to a range of human pressures. Seagrass habitats exist in the shallow marine waters of this interface, have significant values and are impacted by a range of pressures. Cumulative risk analysis is widely used to identify risk from multiple threats and assist in prioritizing management actions. This study conducted a cumulative risk analysis of seagrass habitat associated with the Australian continent to support management actions. We developed a spatially explicit risk model based on a database of threats to coastal aquatic habitat in Australia, spanning 35,000 km of coastline. Risk hotspots were identified …

Stepping Stones Towards Antarctica: Switch To Southern Spawning Grounds Explains An Abrupt Range Shift In Krill, Angus Atkinson, Simeon L. Hill, (...), Deborah K. Steinberg, Et Al

VIMS Articles

Poleward range shifts are a global-scale response to warming, but these vary greatly among taxa and are hard to predict for individual species, localized regions or over shorter (years to decadal) timescales. Moving poleward might be easier in the Arctic than in the Southern Ocean, where evidence for range shifts is sparse and contradictory. Here, we compiled a database of larval Antarctic krill, Euphausia superba and, together with an adult database, it showed how their range shift is out of step with the pace of warming. During a 70-year period of rapid warming (1920s–1990s), distribution centres of both larvae and …

Limitations On Inferring Shark Vulnerability From Spatial Habitat Protection. Response To Shark Conservation Hindered By Lack Of Habitat Protection, Matias Braccini, Stephen J. Newman

Fisheries Research Articles

Birkmanis et al. (2020a) used occurrence data obtained from commercial fisheries to infer the suitable habitat for eight shark species within the Exclusive Economic Zone (EEZ) of Australia, and quantify the amount of suitable habitat contained within existing no-fishing Marine Protected Areas (MPAs). The authors state that shark conservation is hindered because suitable habitat is mostly unprotected from commercial fishing, therefore increasing the vulnerability of the assessed species. In doing so, the authors imply that shark conservation depends predominantly on establishing MPAs in highly suitable habitats; this, unfortunately, would disregard the broad range of other measures available in the fisheries …

Spatial And Seasonal Differences In The Top Predators Of Easter Island: Essential Data For Implementing The New Rapa Nui Multiple‐Uses Marine Protected Area, Naiti A. Morales, Erin E. Easton, Alan M. Friedlander, Euan S. Harvey, Rodrigo Garcia, Carlos F. Gaymer

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

1. Reef fishes are an important component of marine biodiversity, and changes in the composition of the assemblage structure may indicate ecological, climatic, or anthropogenic disturbances. To examine spatial differences in the reef fish assemblage structure around Easter Island, eight sites were sampled during autumn and summer 2016–2017 with baited remote underwater video systems.
2. To determine seasonal changes, quarterly (seasonal) sampling was conducted at five of those eight sites. Fifteen pelagic species of fishes were recorded during this study, some of which have not previously been recorded in scuba surveys, including the Galapagos shark (Carcharhinus galapagensis, Snodgrass & Heller, …

An Assessment Of Sea Scallop Abundance And Distribution In Georges Bank Closed Area Ii And Surrounds : Final Report, David Rudders, Sally Roman

Reports

For the sea scallop, Placopecten magellanicus, the concepts of space and time have emerged as the basis of an effective management tool. The strategy of closing or limiting activities in certain areas for specific lengths of time has gained support as a method to conserve and enhance the scallop resource. In the last decade, rotational area management has provided a mechanism to protect juvenile scallops from fishing mortality by closing areas based upon scallop abundance and age distribution. Approximately half of the sea scallop industry’s current annual landings come from areas under this rotational harvest strategy. While this represents a …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

Thirty Years Of Research On Crown-Of-Thorns Starfish (1986–2016): Scientific Advances And Emerging Opportunities, Morgan S. Pratchett, Clemon F. Caballes, Jennifer C. Wilmes, Samuel Matthews, Camille Mellin, Hugh P. A. Sweatman, Lauren E. Nadler, Jon Brodie, Cassandra A. Thompson, Jessica Hoey, Arthur R. Bos, Maria Byrne, Vanessa Messmer, Sofia A. V. Fortunato, Carla C. M. Chen, Alexandra C. E. Buck, Russell C. Babcock, Sven Uthicke

Marine & Environmental Sciences Faculty Articles

Research on the coral-eating crown-of-thorns starfish (CoTS) has waxed and waned over the last few decades, mostly in response to population outbreaks at specific locations. This review considers advances in our understanding of the biology and ecology of CoTS based on the resurgence of research interest, which culminated in this current special issue on the Biology, Ecology and Management of Crown-of-Thorns Starfish. More specifically, this review considers progress in addressing 41 specific research questions posed in a seminal review by P. Moran 30 years ago, as well as exploring new directions for CoTS research. Despite the plethora of research on …

Frontiers In Otolith Chemistry: Insights, Advances And Applications, B. D. Walther, K. E. Limburg, C. M. Jones, J. J. Schaffler

OES Faculty Publications

The rapid proliferation of publications employing chemical assays of fish hard parts, and otoliths in particular, has led to many novel insights into the migration patterns, life history strategies and mixed stock dynamics of fishes across the globe (Campana et al., 2000; Elsdon et al., 2008; Walther & Limburg, 2012). These insights include uncovering diverse migratory strategies within species and populations (Kerr et al., 2009; Hogan et al., 2014; Schoen et al., 2016), quantifying rates of mixing among stocks across management boundaries (Rooker et al., 2008; Walther & Thorrold, 2010) and estimating the relative …

Water Column Productivity And Temperature Predict Coral Reef Regeneration Across The Indo-Pacific, Bernhard Riegl, Peter W. Glynn, Evie A. Wieters, Samuel J. Purkis, C. D'Angelo, Joerg Wiedenmann

Marine & Environmental Sciences Faculty Articles

Predicted increases in seawater temperatures accelerate coral reef decline due to mortality by heat-driven coral bleaching. Alteration of the natural nutrient environment of reef corals reduces tolerance of corals to heat and light stress and thus will exacerbate impacts of global warming on reefs. Still, many reefs demonstrate remarkable regeneration from past stress events. This paper investigates the effects of sea surface temperature (SST) and water column productivity on recovery of coral reefs. In 71 Indo-Pacific sites, coral cover changes over the past 1-3 decades correlated negative-exponentially with mean SST, chlorophyll a, and SST rise. At six monitoring sites …

Coral Population Trajectories, Increased Disturbance And Management Intervention: A Sensitivity Analysis, Bernhard Riegl, M. L. Berumen, Andrew Bruckner

Marine & Environmental Sciences Faculty Articles

Coral reefs distant from human population were sampled in the Red Sea and one-third showed degradation by predator outbreaks (crown-of-thorns-starfish = COTS observed in all regions in all years) or bleaching (1998, 2010). Models were built to assess future trajectories. They assumed variable coral types (slow/fast growing), disturbance frequencies (5,10,20 years), mortality (equal or not), and connectivity (un/connected to un/disturbed community). Known disturbances were used to parameterize models. Present and future disturbances were estimated from remote-sensing chlorophyll and temperature data. Simulations and sensitivity analysis suggest community resilience at >20-year disturbance frequency, but degradation at higher frequency. Trajectories move from fast-grower …

Modeling Of Oyster Larval Connectivity For Cbf In Support Of Noaa’S Community-Based Restoration Program & Restore America’S Estuaries Oyster And Reef Balls On Sanctuary Reefs In Md And Va - Phase Three, Mac Sisson, Jian Shen

Reports

1. The overarching goal of the Chesapeake Bay Foundation (CBF) for this project has been to enhance the Chesapeake Bay’s oyster population. In Virginia, CBF is working with partners to focus restoration efforts on the Lafayette River in order to bring the river’s biomass and reef substrate to a threshold level that will show a systemic response in terms of enhanced spatset. Portions of their grant have funded the hydrodynamic modeling of the Lafayette River recently performed and herein reported. 2. VIMS personnel have modified its existing three-dimensional hydrodynamic model of the Lafayette/Elizabeth/James Rivers to conduct larval connectivity simulations. The …

Water Quality Monitoring: Guidelines On The Application Of Environmental Impact Assessment Methodology As A Decision Making Tool To Improve Data Quality, Eduardo J. Miles

Reports

No abstract provided.

Assessment Of Oyster Reefs In Lynnhaven River As A Chesapeake Bay Tmdl Best Management Practice, Mac Sisson, M. Lisa Kellogg, Mark Luckenbach, Rom Lipcius, Allison Colden, Jeff Cornwell, Michael Owens

Reports

No abstract provided.

The Development Of A Management Tool To Assess Bacterial Impacts In Rudee Inlet, Virginia Beach, Mac Sisson, Jian Shen, W. G. Reay, Eduardo J. Miles, Albert Y. Kuo, Harry V. Wang

Reports

No abstract provided.

Fisheries Research Report No. 175 - An Assessment Of The Finfish Catch By Recreational Fishers, Tour Operators, Commercial Lobster Fishers And Commercial Wetline Fishers From The Houtman Abrolhos Islands During 2006, Neil R. Sumner

Fisheries research reports

The catch of finfish from the Houtman Abrolhos Islands was estimated for recreational boats, tour operators, commercial rock lobster fishers and occupants of their camps on the islands. Separate methods were used for each of the different sectors due to the variation in fishing activities. Recreational boats and commercial rock lobster fishers were surveyed to determine catches, whereas the catches by tour operator and commercial wet-line fishers were determined from their compulsory catch and effort returns submitted to the Department of Fisheries.

The reported commercial wetline catch for pink snapper, sweetlip emperor and Western Australian dhufish greatly exceeded the combined …

The State Of Coral Reef Ecosystems Of Southeast Florida, Chantal Collier, Rob Ruzicka, Ken Banks, Luiz Barbieri, Jeff Beal, David Bingham, James Bohnsack, Sandra Brooke, Nancy Craig, Richard E. Dodge, Lou Fisher, Nick Gadbois, David S. Gilliam, Lisa Gregg, Todd Kellison, Vladimir Kosmynin, Brian Lapointe, Erin Mcdevitt, Janet Phipps, Nikki Poulos, John Proni, Patrick Quinn, Bernhard Riegl, Richard E. Spieler, Joanna Walczak, Brian K. Walker, Denise Warrick

Marine & Environmental Sciences Faculty Reports

The northern extension of the Florida reef tract and a complex of limestone ridges run parallel to the subtropical Atlantic coastline of southeast Florida. Spanning 170 km from the northern border of Biscayne National Park (BNP) in Miami-Dade County to the St. Lucie Inlet in Martin County, the reefs and hardbottom areas in this region support a rich and diverse biological community (Figure 5.1). Nearshore reef habitats in southeast Florida include hardbottom areas, patch reefs and worm reefs (Phragmatopoma spp.) exhibiting abundant octocoral, macroalgae, stony coral and sponge assemblages. Offshore, coral reef associated biotic assemblages occur on linear Holocene Acropora …

A Five-Year Management Strategy For Recreational Fishing In The Pilbara/Kimberley Region Of Western Australia. Final Report., Pilbara/Kimberley Recreational Fishing Working Group

Fisheries management papers

The discussion paper (Fisheries Management Paper No. 181 'A quality future for recreational fishing in the Pilbara/Kimberley Region) attracted widespread comment, with around 200 people attending public meetings in the region. In addition, 152 written submissions were received from recreational fishers, angling clubs, and other stakeholders. The Recreational Fishing Advisory Committee (RFAC) and the Pilbara/Kimberley Recreational Fishing Working Group would like to thank those people and organizations that took the time to provide this valuable feedback. All recommendations contained in this final report, along with the action that needs to be taken to protect the long-term sustainability of our fish …

The State Of Coral Reef Ecosystems Of The United States And Pacific Freely Associated States: 2002, Donna D. Turgeon, Rebecca G. Asch, Billy Causey, Richard E. Dodge, Walter Jaap, Kenneth Banks, Joanne Delaney, Brian Keller, Richard E. Spieler, Cruz A. Matos, Jorge R. Garcia, Ernesto Diaz, Don Catanzaro, Caroline Rogers, Zandy Hillis-Starr, Richard Nemeth, Herman Taylor, Marcia Taylor, George P. Schmahl, Margaret W. Miller, David A. Gulko, James E. Maragos, Alan Friedlander, Cynthia L. Hunter, Russell E. Brainard, Peter Craig, Robert H. Richmond, Gerry W. Davis, John Starmer, Michael Trianni, Peter Houk, Charles E. Birkeland, Ahser Edward, Yimnang Golbuu, Jay Gutierrez, Noah Idechong, James E. Maragos, Gustav Paulay, Andrew Tafileichig, Nancy Vander Velde

Marine & Environmental Sciences Faculty Reports

Called for by the U.S. Coral Reef Task Force’s (USCRTF) National Action Plan to Conserve Coral Reefs, this is the first biennial report on the condition of coral reefs. It is the scientific baseline for subsequent reports on the health of U.S. coral reef ecosystems that are to be used by NOAA and others to evaluate the efficacy of coral reef conservation and management practices. The National Oceanic and Atmospheric Administration’s National Ocean Service led the development of this report. It was authored by 38 experts and supported by 79 contributors from government agencies and non-governmental organizations across the nation …

Status Of Coral Reefs In The Us Caribbean And Gulf Of Mexico: Florida, Texas, Puerto Rico, Us Virgin Islands And Navassa, Billy Causey, Joanne Delaney, Ernesto Diaz, Richard E. Dodge, Jorge R. Garcia, Jamie Higgins, Walter Jaap, Cruz A. Matos, George P. Schmahl, Caroline Rogers, Margaret W. Miller, Donna D. Turgeon

Marine & Environmental Sciences Faculty Reports

The following report on the status of US Caribbean coral reef ecosystems has been summarised from more extensive reports submitted to the US Coral Reef Task Force (USCRTF) working group that implemented in 2000 ‘A National Program to Assess, Inventory, and Monitor US Coral Reef Ecosystems’. The more-lengthy reports are also the basis for the biennial-issued document, ‘Status and Trends of US Coral Reef Ecosystems’. Each author is a recognised technical expert with responsibility for monitoring and/or managing aspects of their respective coral reef ecosystems.

Modeling The Msx Parasite In Eastern Oyster (Crassostrea Virginica) Populations. Ii. Salinity Effects, Michelle C. Paraso, Susan E. Ford, Eric N. Powell, Eileen E. Hofmann, John M. Klinck

CCPO Publications

An oyster population model coupled with a model for Haplosporidium nelsoni, the causative agent of the oyster disease MSX, was used with salinity time-series constructed from Delaware River flow measurements to study environmentally-induced variations in the annual cycle of this disease in Delaware Bay oyster populations. Model simulations for the lower Bay (high salinity) sire reproduced the annual cycle observed in lower Delaware Bay. Simulations at both upper Bay (low salinity) and lower Bay sites produced prevalences and intensities that were consistent with field observations. At all sites, low freshwater discharge resulted in increased disease levels, whereas high freshwater …

Status Of Stock Assessment Knowledge Used To Manage Important Virginia Finfish Species, Virginia Marine Resources Commission, Virginia Institute Of Marine Science

Reports

No abstract provided.

Manual For Handling And Shedding Blue Crabs (Callinectes Sapidus), Michael J. Oesterling

Reports

This manual is intended to present a practical approach to constructing and operating a Chesapeake Bay crab shedding facility. Included are portions of an earlier VIMS publication by Paul A. Haefner, Jr. and David Garten (1974), "Methods of handling and shedding blue crabs, (Callinectes sapidus)," as well as a compilation of other scientific and industry experiences. Techniques described may not apply to all situations; in many cases general recommendations are made. Additionally, descriptions of various facility designs refer mainly to those in use in Chesapeake Bay; other areas of the country may use varying, but similar designs. Although the information …

Distribution Of Submerged Aquatic Vegetation In The Chesapeake Bay And Tributaries And Chincoteague Bay - 1993, Robert J. Orth, Judith F. Nowak, Gary F. Anderson, Jennifer R. Whiting

Reports

No abstract provided.

Virginia's Recreational Marlin And Tuna Fishery 1983 -1988 : A Report To The Fishermen, Eleanor A. Bochenek, Nancy J. Chartier, Jon A. Lucy

Reports

No abstract provided.

Evaluation Of Ventra Vacs At Pier 12 Naval Base, Norfolk, Virginia, Gaines C. Ho, Robert J. Diaz, Bruce J. Neilson

Reports

No abstract provided.

A Report To The Oyster Industry Of Virginia On The Biology And Management Of The Cownose Ray (Rhinoptera Bonasus, Mitchill) In Lower Chesapeake Bay, John V. Merriner, Joseph W. Smith

Reports

The purpose of this report is to: (1) suggest reasons for the recently observed cownose ray predation on Rappahannock River oyster beds and the apparent increased abundance of the ray, and (2) recommend short- and long-term methods to control and/or manage cownose ray predation on commercially important sh1ellfish beds.

Report Of The National Blue Crab Industry Workshop: September 10-11, 1977 Charleston, South Carolina, Raymond J. Rhodes, W. A. Van Engel

Reports

The National Blue Crab Industry Workshop was held on September 10-11, 1977 at the South Carolina Marine Resources Center of the South Carolina Wildlife and Marine Resources Department in Charleston, South Carolina. The workshop was organized to address the blue crab industry's major problem areas and stimulate innovative thinking for improving productivity. The problems faced by the blue crab industry are not necessarily unique compared to other food industries; consequently, methodology to mitigate these problems will probably be transferred from other industries. Much of what was discussed in the technology corrnnittees has been faced by other industries, although recent food …