Life Sciences Commons^™

Increased Feeding And Nutrient Excretion Of Adult Antarctic Krill, Euphausia Superba, Exposed To Enhanced Carbon Dioxide (Co2), Gk Saba, O Schofield, Jj Torres, Eh Ombres, Deborah K. Steinberg

VIMS Articles

Ocean acidification has a wide-ranging potential for impacting the physiology and metabolism of zooplankton. Sufficiently elevated CO2 concentrations can alter internal acid-base balance, compromising homeostatic regulation and disrupting internal systems ranging from oxygen transport to ion balance. We assessed feeding and nutrient excretion rates in natural populations of the keystone species Euphausia superba (Antarctic krill) by conducting a CO2 perturbation experiment at ambient and elevated atmospheric CO2 levels in January 2011 along the West Antarctic Peninsula (WAP). Under elevated CO2 conditions (similar to 672 ppm), ingestion rates of krill averaged 78 mu g C individual(-1) d(-1) and were 3.5 times …

The Impact Of Coastal Phytoplankton Blooms On Ocean-Atmosphere Thermal Energy Exchange: Evidence From A Two-Way Coupled Numerical Modeling System, Jason K. Jolliff, Travis A. Smith, Charlie N. Barron, Sergio Derada, Stephanie C. Anderson, Richard W. Gould, Robert A. Arnone

Faculty Publications

A set of sensitivity experiments are performed with a two-way coupled and nested ocean-atmosphere forecasting system in order to deconvolve how dense phytoplankton stocks in a coastal embayment may impact thermal energy exchange processes. Monterey Bay simulations parameterizing solar shortwave transparency in the surface ocean as an invariant oligotrophic oceanic water type estimate consistently colder sea surface temperature (SST) than simulations utilizing more realistic, spatially varying shortwave attenuation terms based on satellite estimates of surface algal pigment concentration. These SST differences lead to an similar to 88% increase in the cumulative turbulent thermal energy transfer from the ocean to the …

Restoring Oyster Reefs In Great Bay Estuary, Nh 2012 Annual Program Report, Ray Konisky, Raymond E. Grizzle, Krystin M. Ward, Kara Mcketon

PREP Reports & Publications

The eastern oyster (Crassostrea virginica) in New Hampshire’s Great Bay Estuary has declined in the past decades, with local populations reduced due primarily to disease, excessive siltation, and past over-harvest. The loss of filtering oysters results in diminished ecological benefits for water quality, nitrogen control, and other services that healthy oyster populations provide. In support of management objectives to restore oyster populations, The Nature Conservancy (TNC) and the University of New Hampshire (UNH) have combined for a fourth consecutive year of scaled-up methods to rebuild reefs and oyster populations. Since 2009, we have “planted” dried shell, primarily surf-clam …

Assimilating Altimetric Data Into A South China Sea Model, Chau-Ron Wu, Ping-Tung Shaw, Shenn-Yu Chao

Faculty Publications

Sea surface heights from the TOPEX/Poseidon altimeter are assimilated into a three-dimensional primitive equation model to derive the circulation in the South China Sea. With data assimilation the model resolves not only the basinwide circulation but also a dipole off Vietnam and a low/high feature near the Luzon Strait. Mesoscale features are missing in the simulation without data assimilation because of poor resolution in the wind field and inadequate knowledge of the transport through the Luzon Strait. Compared to the case without data assimilation, data assimilation reduces the root mean square error between the simulated and observed sea surface heights …

Depth-Variable Settlement Patterns And Predation Influence On Newly Settled Reef Fishes (Haemulon Spp., Haemulidae), Lance K.B. Jordan, Kenyon C. Lindeman, Richard E. Spieler

Ocean Engineering and Marine Sciences Faculty Publications

During early demersal ontogeny, many marine fishes display complex habitat-use patterns. Grunts of the speciose genus Haemulon are among the most abundant fishes on western North Atlantic coral reefs, with most species settling to shallow habitats (≤12 m). To gain understanding into cross-shelf distributional patterns exhibited by newly settled stages of grunts (<2 cm total length), we examined: 1) depth-specific distributions of congeners at settlement among sites at 8 m, 12 m, and 21 m, and 2) depth-variable predation pressure on newly settled individuals (species pooled). Of the six species identified from collections of newly settled specimens (n = 2125), Haemulon aurolineatum (tomtate), H. flavolineatum (French grunt), and H. striatum (striped grunt) comprised 98% of the total abundance; with the first two species present at all sites. Prevalence of H. aurolineatum and H. flavolineatum decreased substantially from the 8-m site to the two deeper sites. In contrast, H. striatum was absent from the 8-m site and exhibited its highest frequency at the 21-m site. Comparison of newly settled grunt delta density for all species on caged (predator exclusion) and control artificial reefs at the shallowest site (8-m) revealed no difference, while the 12-m and 21-m sites exhibited significantly greater delta densities on the caged treatment. This result, along with significantly higher abundances of co-occurring piscivorous fishes at the deeper sites, indicated lower predation pressure at the 8-m site. This study suggests habitat-use patterns of newly settled stages of some coral reef fishes that undergo ontogenetic shifts are a function of depth-variable predation pressure while, for at least one deeper-water species, proximity to adult habitat appears to be an important factor affecting settlement distribution.

Depth-Variable Settlement Patterns And Predation Influence On Newly Settled Reef Fishes (Haemulon Spp., Haemulidae), Lance K. B. Jordan, Kenyon C. Lindeman, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

During early demersal ontogeny, many marine fishes display complex habitat-use patterns. Grunts of the speciose genus Haemulon are among the most abundant fishes on western North Atlantic coral reefs, with most species settling to shallow habitats (≤12 m). To gain understanding into cross-shelf distributional patterns exhibited by newly settled stages of grunts (<2 cm total length), we examined: 1) depth-specific distributions of congeners at settlement among sites at 8 m, 12 m, and 21 m, and 2) depth-variable predation pressure on newly settled individuals (species pooled). Of the six species identified from collections of newly settled specimens (n = 2125), Haemulon aurolineatum (tomtate), H. flavolineatum(French grunt), and H. striatum (striped grunt) comprised 98% of the total abundance; with the first two species present at all sites. Prevalence of H. aurolineatum and H. flavolineatumdecreased substantially from the 8-m site to the two deeper sites. In contrast, …

Transcriptional Response Of Two Core Photosystem Genes In Symbiodinium Spp. Exposed To Thermal Stress, Michael P. Mcginley, Matthew D. Aschaffenburg, Daniel D. Pettay, Robin T. Smith, Todd C. Lajeunesse, Mark E. Warner

Department of Biological Sciences

Mutualistic symbioses between scleractinian corals and endosymbiotic dinoflagellates (Symbiodinium spp.) are the foundation of coral reef ecosystems. For many coral-algal symbioses, prolonged episodes of thermal stress damage the symbiont's photosynthetic capability, resulting in its expulsion from the host. Despite the link between photosynthetic competency and symbiont expulsion, little is known about the effect of thermal stress on the expression of photosystem genes in Symbiodinium. This study used real-time PCR to monitor the transcript abundance of two important photosynthetic reaction center genes, psbA(encoding the D1 protein of photosystem II) and psaA (encoding the P700 protein of photosystem I), …

Characterization Of Atlantic Cod Spawning Habitat And Behavior In Icelandic Coastal Waters, Timothy B. Grabowski, Kevin M. Boswell, Bruce J. Mcadam, R.J. David Wells, Guđrún Marteinsdóttir

Department of Biological Sciences

The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15–16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were …

Final Environmental Data Report December 2012: Technical Support Document For The 2013 State Of Our Estuaries Report, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership (PREP) is part of the U.S. Environmental Protection Agency’s National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuarine resources. PREP is funded by the EPA and is administered by the University of New Hampshire.

The following sections contain the most recent data for the indicators currently tracked by PREP.

Collaborative Research: Life Histories Of Species In The Genus Calanus In The North Atlantic And North Pacific Oceans And Responses To Climate Forcing, Jeffrey Runge, Andrew J. Pershing

University of Maine Office of Research Administration: Grant Reports

Species in the genus Calanus are predominant in the mesozooplankton of the North Atlantic and North Pacific Oceans. Their key role in marine food web interactions has been recognized in GLOBEC programs, both in the U.S. and internationally. Considerable knowledge of life history characteristics, including growth, reproduction, mortality, diapause behavior and demography has been acquired from both laboratory experiments and measurements at sea. This project reviews and synthesizes this knowledge and uses it to develop an Individual Based Life Cycle model for sibling species in two sympatric species pairs, C.marshallae and C. pacificus in the North Pacific Ocean and C. …

Modeling Of Oyster Larval Connectivity For Cbf In Support Of Noaa’S Community-Based Restoration Program & Restore America’S Estuaries Oyster And Reef Balls On Sanctuary Reefs In Md And Va - Phase Three, Mac Sisson, Jian Shen

Reports

1. The overarching goal of the Chesapeake Bay Foundation (CBF) for this project has been to enhance the Chesapeake Bay’s oyster population. In Virginia, CBF is working with partners to focus restoration efforts on the Lafayette River in order to bring the river’s biomass and reef substrate to a threshold level that will show a systemic response in terms of enhanced spatset. Portions of their grant have funded the hydrodynamic modeling of the Lafayette River recently performed and herein reported. 2. VIMS personnel have modified its existing three-dimensional hydrodynamic model of the Lafayette/Elizabeth/James Rivers to conduct larval connectivity simulations. The …

Phenotypic Plasticity Of Oral Jaw Dentition In Archosargus Probatocephalus, Cynthia E. Worcester

Masters Theses & Specialist Projects

Phenotypic plasticity, the capacity of a single genotype to exhibit variable phenotypes in different environments, is common in many species. A sample of wild caught Archosargus probatocephalus, also known as sheepshead, from Florida was randomly divided into two treatment groups: one group was fed soft prey, Mercenaria sp. muscle tissue, and the other group was fed hard prey, Mercenaria sp. in the shell, for 365 days. It was hypothesized that the sheepshead fed hard prey would have a thicker tooth enamel layer containing more calcium, and therefore be stronger than the tooth enamel layer of those fed soft prey …

Coral Thermal Tolerance: Tuning Gene Expression To Resist Thermal Stress, Anthony J. Bellatuono, Camila Granados-Cifuentes, David J. Miller, Ove Hoegh-Guldberg, Mauricio Rodriguez-Lanetty

Department of Biological Sciences

The acclimatization capacity of corals is a critical consideration in the persistence of coral reefs under stresses imposed by global climate change. The stress history of corals plays a role in subsequent response to heat stress, but the transcriptomic changes associated with these plastic changes have not been previously explored. In order to identify host transcriptomic changes associated with acquired thermal tolerance in the scleractinian coralAcropora millepora, corals preconditioned to a sub-lethal temperature of 3°C below bleaching threshold temperature were compared to both non-preconditioned corals and untreated controls using a cDNA microarray platform. After eight days of hyperthermal …

Predicting Coral Recruitment In Palau’S Complex Reef Archipelago, Yimnang Golbuu, Eric C. Wolanski, Jacques Wasai Idechong, Steven Victor, Adelle Lukes Isechal, Noelle Wenty Oldiais, David Idip, Robert H. Richmond, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Reproduction and recruitment are key processes that replenish marine populations. Here we use the Palau archipelago, in the western Pacific Ocean, as a case study to examine scales of connectivity and to determine whether an oceanographic model, incorporating the complex reef architecture, is a useful predictor of coral recruitment. We tested the hypothesis that the reefs with the highest retention also had the highest densities of juvenile coral density from 80 field sites. Field comparisons showed a significant correlation between the densities of juvenile Acropora colonies and total larval recruitment derived from the model (i.e., calculated as the sum of …

Global Trophic Position Comparison Of Two Dominant Mesopelagic Fish Families (Myctophidae, Stomiidae) Using Amino Acid Nitrogen Isotopic Analyses, C. Anela Choy, Peter C. Davison, Jeffrey C. Drazen, Adrian Flynn, Elizabeth J. Gier, Joel C. Hoffman, Jennifer P. Mcclain-Counts, Todd W. Miller, Brian N. Popp, Steve W. Ross, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The δ15N values of organisms are commonly used across diverse ecosystems to estimate trophic position and infer trophic connectivity. We undertook a novel cross-basin comparison of trophic position in two ecologically well-characterized and different groups of dominant mid-water fish consumers using amino acid nitrogen isotope compositions. We found that trophic positions estimated from the δ15N values of individual amino acids are nearly uniform within both families of these fishes across five global regions despite great variability in bulk tissue δ15N values. Regional differences in the δ15N values of phenylalanine confirmed that bulk tissue δ15N values reflect region-specific water mass biogeochemistry …

Air-Sea Interface In Hurricane Conditions, Alexander Soloviev, A. Fujimura, Silvia Matt

Marine & Environmental Sciences Faculty Articles

Improving hurricane prediction models requires better understanding of complex processes taking place at the air-sea interface at high wind speeds. The change of the air-sea interaction regime in hurricane conditions has been linked to the mechanism of direct disruption of the air-sea interface by pressure fluctuations working against the surface tension force. This can be achieved through the Kelvin-Helmholtz type instability. In order to investigate this mechanism, we have conducted a series of 3D numerical experiments using a volume of fluid multiphase model. The experiments were initialized with either a flat interface or short wavelets and wind stress applied at …

Idiosyncratic Responses Of Seagrass Phenolic Production Following Sea Urchin Grazing, Latina Steele, John F. Valentine

Biology Faculty Publications

While chemical defenses can determine plant persistence in terrestrial ecosystems and some marine macroalgae, their role in determining seagrass persistence in areas of intense grazing is unknown. As a first step toward determining if concentrations of feeding deterrents in seagrasses increase following herbivore attacks, we conducted 4 experiments using a common macrograzer (sea urchin Lytechinus variegatus) and 2 phylogenetically divergent seagrass species (Thalassia testudinum and Halodule wrightii). Macrograzer impacts on production of phenolic acids and condensed tannins varied somewhat idiosyncratically with season, urchin density, and distance from urchin damage. In general, phenolic concentrations were higher in both turtlegrass and shoalgrass …

Cephalopod Genomics: A Plan Of Strategies And Organization, Caroline B. Albertin, Laure Bonnaud, C. Titus Brown, Wendy J. Crookes-Goodson, Rute R. Da Fonseca, Carlo Di Cristo, Brian P. Dilkes, Eric Edsinger-Gonzales, Robert M. Freeman Jr., Roger T. Hanlon, Kristen M. Koenig, Annie R. Lindgren, Mark Q. Martindale, Patrick Minx, Leonid L. Moroz, Marie-Therese Nödl, Spencer V. Nyholm, Atsushi Ogura, Judit R. Pungor, Joshua J. C. Rosenthal, Erich M. Schwarz, Shuichi Shigeno, Jan M. Strugnell, Tim Wollesen, Guojie Zhang, Clifton W. Ragsdale

Biology Faculty Publications and Presentations

The Cephalopod Sequencing Consortium (CephSeq Consortium) was established at a NESCent Catalysis Group Meeting, “Paths to Cephalopod Genomics- Strategies, Choices, Organization,” held in Durham, North Carolina, USA on May 24-27, 2012. Twenty-eight participants representing nine countries (Austria, Australia, China, Denmark, France, Italy, Japan, Spain and the USA) met to address the pressing need for genome sequencing of cephalopod mollusks. This group, drawn from cephalopod biologists, neuroscientists, developmental and evolutionary biologists, materials scientists, bioinformaticians and researchers active in sequencing, assembling and annotating genomes, agreed on a set of cephalopod species of particular importance for initial sequencing and developed strategies and an …

The Lobster Bulletin, Fall 2012, Lobster Institute, University Of Maine

Lobster Bulletin

The Lobster Bulletin newsletter includes research updates, and information on lobsters and the lobster industry. The Lobster Institute at the University of Maine is dedicated to protecting and conserving the lobster resource, and enhancing lobstering as an industry and a way of life.

Headlines in the Fall 2012 issue include:

• Group Seeks to Protect Ocean by Promoting Better Lawn Care Practices
• Lobster Institute 25th Anniversary Celebration Continues
• Maine Conforms First-Ever Case of West Nile Virus
• Research Report: Direct Determination of Age in Lobsters
• Research Report: Lobster Cam Back Online Soon
• Lobster Council Taking Giant Step Forward

Setting The Sound Up For Success, Hillary Kenyon

Wrack Lines

Deploying remotely-set disease-resistant oyster seed in biodegradable netting on a natural bed in Connecticut. The eastern oyster, Crassostrea virginica, is a keystone species in Connecticut's coastal environment.

Ken Beatrice: A Volunteer For All Seasons, Peg Vanpatten

Wrack Lines

"It was really interesting, and as I read, I wondered how I could personally get involved in efforts to conserve the Sound," Ken said. One of the listings in the box titled "What Can I Do to Help?" was the NOAA volunteer Phytoplankton Monitoring Network.

Simulated Performance Of Catch Curve Methods For Estimating Total Mortality Rate, Matthew W. Smith, John M. Hoenig

Reports

This document has been issued as VIMS Data Report 60 and provides additional simulation results for Smith et al. (2012) published in the North American Journal of Fisheries Management. Catch curve methods are a basic tool of population dynamics for estimating total mortality rate from age composition. There are a number of methodological issues which remain unresolved. Smith et al. (2012) attempts to provide guidelines on the use of these methods based on extensive Monte Carlo simulations. This report presents additional simulation results to supplement the results in the journal article. The estimators, evaluation criteria, simulation procedures, and conditions simulated …

Light And Vision In The Deep-Sea Benthos: I. Bioluminescence At 500-1000 M Depth In The Bahamian Islands, Sönke Johnsen, Tamara M. Frank, Steven H.D. Haddock, Edith A. Widder, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Bioluminescence is common and well studied in mesopelagic species. However, the extent of bioluminescence in benthic sites of similar depths is far less studied, although the relatively large eyes of benthic fish, crustaceans and cephalopods at bathyal depths suggest the presence of significant biogenic light. Using the Johnson-Sea-Link submersible, we collected numerous species of cnidarians, echinoderms, crustaceans, cephalopods and sponges, as well as one annelid from three sites in the northern Bahamas (500–1000 m depth). Using mechanical and chemical stimulation, we tested the collected species for light emission, and photographed and measured the spectra of the emitted light. In addition, …

Development And Characterization Of 11 Novel Microsatellite Loci For The Roundscale Spearfish Tetrapturus Georgii And Their Cross-Species Amplification Among Other Istiophorid Species, Andrea M. Bernard, Kevin A. Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Eleven novel polymorphic microsatellite loci were developed and characterized for the recently validated roundscale spearfish Tetrapturus georgii. Characterization of these markers, based on 35 roundscale spearfish from the western North Atlantic, revealed two to 21 alleles per locus with an average expected heterozygosity (HE) of 0·09–0·94, and all loci conformed to Hardy–Weinberg expectations. Cross-amplification of these 11 loci against all other eight known istiophorid species indicates promising prospects for the utility of these markers for istiophorids in general.

Light And Vision In The Deep-Sea Benthos: Ii. Vision In Deep-Sea Crustaceans, Tamara M. Frank, Sönke Johnsen, Thomas W. Cronin

Marine & Environmental Sciences Faculty Articles

Using new collecting techniques with the Johnson-Sea-Link submersible, eight species of deep-sea benthic crustaceans were collected with intact visual systems. Their spectral sensitivities and temporal resolutions were determined shipboard using electroretinography. Useable spectral sensitivity data were obtained from seven species, and in the dark-adapted eyes, the spectral sensitivity peaks were in the blue region of the visible spectrum, ranging from 470 to 497 nm. Under blue chromatic adaptation, a secondary sensitivity peak in the UV portion of the spectrum appeared for two species of anomuran crabs:Eumunida picta (λ_max 363 nm) and Gastroptychus spinifer (λ_max 383 nm). Wavelength-specific …

Assessment Of Genetic Connectivity And Potential Management Plans For The Coral Reef Ecosystems Of Guna Yala, Panama, Molly Mcentee

Independent Study Project (ISP) Collection

Genetic connectivity between three populations of the common reef sea urchin, Echinometra lucunter located in fringing reefs off the islands of Ukuptupu, Wichupwala and Porvenir in western Guna Yala was analyzed to give insight into population distribution and the most effective conservation management plans for the area. The reefs of Guna Yala are facing many threats on a global or regional scale including global warming, ocean acidification, sea level rise, disease and severe storms. On a local level, increasing stress is being placed on these reef ecosystems from human activity including coral mining, overfishing, and pollution. In order to prevent …

Modeling Photosynthesis Of Spartina Alterniflora (Smooth Cordgrass) Impacted By The Deepwater Horizon Oil Spill Using Bayesian Inference, Wei Wu, Patrick D. Biber, Mark S. Peterson, Chongfeng Gong

Faculty Publications

To study the impact of the Deepwater Horizon oil spill on photosynthesis of coastal salt marsh plants in Mississippi, we developed a hierarchical Bayesian (HB) model based on field measurements collected from July 2010 to November 2011. We sampled three locations in Davis Bayou, Mississippi (30.375 degrees N, 88.790 degrees W) representative of a range of oil spill impacts. Measured photosynthesis was negative (respiration only) at the heavily oiled location in July 2010 only, and rates started to increase by August 2010. Photosynthesis at the medium oiling location was lower than at the control location in July 2010 and it …

Nutrient Depletion As A Proxy For Microbial Growth In Deepwater Horizon Subsurface Oil/Gas Plumes, Alan M. Shiller, Dongjoo Joung

Faculty Publications

The Deepwater Horizon accident resulted in a substantial uncontrolled hydrocarbon release to the northern Gulf of Mexico, much of which was entrained in deep submerged plumes. While bio-degradation of the hydrocarbons has been inferred from microbial biomass and genetics, the amount of conversion of oil and gas carbon to biomass remains uncertain having only been estimated in modeling studies. Here we examine correlated depletions of nitrate, phosphate and oxygen in the submerged plumes and conclude that a substantial portion of hydrocarbons in these plumes was converted to biomass (0.8-2 x 10(10) mol C). This contrasts with nutrient-limited surface waters where …

Eelgrass Distribution In The Great Bay Estuary For 2011, Frederick T. Short

PREP Reports & Publications

Eelgrass in the Great Bay Estuary declined in both distribution and biomass between 2010 and 2011. In 2011, eelgrass was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor and Little Bay. Eelgrass distribution in Great Bay itself decreased between 2010 and 2011 and experienced an alarming 26% loss of biomass in a single year. In Great Bay itself there has been a loss of 35% of eelgrass distribution since 1996. In 2011, despite recent consecutive excellent growing years in terms of weather, we saw a reverse of the trend of slight increases in …

Eelgrass Distribution In The Great Bay Estuary For 2010, Frederick T. Short

PREP Reports & Publications

The following is a revision of the 2010 eelgrass status report submitted to the Piscataqua Region Estuaries Partnership by Dr. Fred Short, correcting an error in eelgrass percent cover classification discovered by PREP staff during their QA/QC process. Eelgrass in the Great Bay Estuary in 2010 was once again mainly present in the Great Bay itself with limited distribution in Portsmouth Harbor. In 2010, Portsmouth Harbor experienced a 9% loss of eelgrass distribution since 2009, for a loss of 47% of the Harbor’s eelgrass distribution since 1996, an alarming trend. For the third year in a row in the Piscataqua …