Life Sciences Commons^™

Translating Statistical Species-Habitat Models To Interactive Decision Support Tools, Lyndsie S. Wszola, Victoria L. Simonsen, Erica F. Stuber, Caitlyn R. Gillespie, Lindsey N. Messinger, Karie L. Decker, Jeffrey J. Lusk, Christopher F. Jorgensen, Andrew A. Bishop, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Understanding species-habitat relationships is vital to successful conservation, but the tools used to communicate species-habitat relationships are often poorly suited to the information needs of conservation practitioners. Here we present a novel method for translating a statistical species-habitat model, a regression analysis relating ring-necked pheasant abundance to landcover, into an interactive online tool. The Pheasant Habitat Simulator combines the analytical power of the R programming environment with the user-friendly Shiny web interface to create an online platform in which wildlife professionals can explore the effects of variation in local landcover on relative pheasant habitat suitability within spatial scales relevant to …

Assessing Preservation Priorities Of Caves And Karst Areas Using The Frequency Of Endemic Cave-Dwelling Species, Eugen Nitzu, Marius Vlaicu, Andrei Giurginca, Ioana N. Meleg, Ionut Popa, Augustin Nae, Ştefan Baba

International Journal of Speleology

Endemic and rare species as bioindicators of habitat vulnerability were used to develop protection and management plans for biotope prioritization (mainly islands habitats, lava tubes or groundwaters). Due to their narrow distribution, the endemic species (species confined to a restricted geographic area) are more susceptible to ecological disequilibrium and habitat loss than the widespread ones. Consequently, endemics become endangered in the context of ecological disturbance caused by anthropogenic pressure, making them suitable candidates to assess environmental preservation needs. Taking into consideration that most of the stygobitic and troglobitic species are endemic and confined to specific karst areas, based on their …

Fungi Of Forests: Examining The Diversity Of Root-Associated Fungi And Their Responses To Acid Deposition, Donald Jay Nelsen

Graduate Theses and Dissertations

Global importance of forests is difficult to overestimate, given their role in oxygen production, ecological roles in nutrient cycling and supporting numerous living species, and economic value for industry and as recreational zones. Fitness of the forest-forming trees strongly depends on microbial communities associated with tree roots. In particular, fungi impact tree fitness: mycorrhizal species provide water and nutrients for the trees in exchange for C, endophytic fungi play key roles in host defense against pathogenic organisms, and saprotrophic fungi decompose dead organic matter and facilitate nutrient cycling. In addition, pathogenic fungal species strongly affect forest fitness. Despite their importance, …

Combined Effects Of Dissolved Oxygen And Temperature On Aerobic Respiration And Respiratory Recovery Responses Of The Spioniform Polychaete, Streblospio Gynobranchiata, In Relation To Body Size, Alyssa Bennett

Master's Theses

Elevated surface temperatures exacerbate the threat of hypoxia within coastal ecosystems. These two primary stressors likely interact as they elicit opposing physiological responses from marine organisms. Metabolic depression is typically associated with hypoxia, while metabolic rates increase with temperature. Moreover, physiological effects of combined stressors may not be additive. In light of increasing pressures from hypoxia, elevated ocean temperatures, and other stressors within coastal regions, studies need to examine effects of multiple stressors on physiology of coastal organisms.

Mass-specific aerobic respiration (V_O2) was characterized as a proxy for metabolic cost of Streblospio gynobranchiata, at combined levels of …

Effects Of Temperature On Growth And Molting In Blue Crabs (Callinectes Sapidus) And Lesser Blue Crabs (Callinectes Similis), Abigail Ann Kuhn

Master's Theses

Temperature can exert impacts on many processes in ectotherms. With global temperatures rising due to climate change, many ectothermic species may exhibit changes in growth rates and size at maturity, and these changes can have population-level effects. Predicting responses of species to climate change will require not only knowledge of thermal tolerance limits, but also effects of temperature change on growth rates and other life history parameters. For arthropods that exhibit discontinuous growth (i.e., molting), this includes both intermolt period and growth per molt. Previous laboratory and field experiments suggest that temperature affects both intermolt period (IMP) and growth per …

Distributions Of Krill And Antarctic Silverfish And Correlations With Environmental Variables In The Western Ross Sea, Antarctica, L. Brynn Davis, Eileen E. Hofmann, John M. Klinck, Andrea Piñones, Michael S. Dinniman

CCPO Publications

Antarctic krill Euphausia superba, crystal krill E. crystallorophias, and Antarctic silverfish Pleuragramma antarctica are key mid-trophic level species in the Ross Sea, connecting primary production to the upper trophic levels. Distributions of these species were constructed from observations made in the western Ross Sea from 1988 to 2004. Distributions of environmental conditions were obtained from a 5-km resolution circulation model (temperature, mixed layer depth, surface speed) and satellite-derived observations (chlorophyll, sea ice cover). A hierarchy of statistical methods determined correlations and relationships between species and environmental conditions. Each species occupies a localized habitat defined by different environmental characteristics. …

Land Cover Change Shows Little Effect On Migration Patterns Of Wood Storks And Great Egrets, Johanna Smith

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Agricultural Responses To Climate Change: A Study Of Adaptive Farming Methods In Kizanda Village, Bailey Smith-Helman

Independent Study Project (ISP) Collection

Agriculture is vital to the economic and social systems in Tanzania, composing 30% of the country’s GDP as well as 80% of employment (FAO, 2014). Despite agriculture’s important role, it remains one of the most vulnerable sectors to climate change. Current trends project global average temperature to increase by 0.8-2.6 degrees Celsius, leaving farmers to face changes in rainfall, soil quality, and new pests and diseases (IPCC, 2007). Farmers will be forced to adapt to the changing climate if they are to sustain their livelihoods and the Tanzanian economy. For these reasons, it is important to understand the types of …

Counting Crabs: Assessment Of Mangrove Crab Diversity And Density Among Three Sites In Ushongo, Tanzania, Clarasophia Gust

Independent Study Project (ISP) Collection

This study assessed the density and diversity of crabs across three mangrove forest zones in Ushongo, Tanzania. The aim was to understand variance in the composition and distribution of mangrove crabs in relation to mangrove tree composition gradients in the area. Sites were measured using a 200m line transect and 40-plot method. Data was also collected from a sand beach habitat to compare to the diversity and distribution of mangrove habitats. Diversity was analyzed using Simpson’s Index of Diversity and an ANOVA test on the average number of species found per plot in each site. Density was analyzed using an …

Bacteria Mitigation In Sponge Mariculture, Jambiani Zanzibar, Claire Johnston

Independent Study Project (ISP) Collection

The declining seaweed industry coupled with efforts by the NGO Marine Cultures have led to the establishment of sponge mariculture in Jambiani, Zanzibar. However, growing cyanobacteria levels have substantially increased sponge mortality rates. In order to determine successful cyanobacteria mitigation treatments, six populations of farm ropes, support lines, and sponges were (a) untreated, (b) manually cleaned or submerged in solutions of (c) 2% hydrogen peroxide, (d) 4% hydrogen peroxide, (e) 50 g/L salt, or (f) 70 g/L salt. No conclusions were drawn from rope treatments, no techniques were effective for support line treatments, and both concentrations of hydrogen peroxide were …

Do Advisors Perceive Climate Change As An Agricultural Risk? An In-Depth Examination Of Midwestern U.S. Ag Advisors’ Views On Drought, Climate Change, And Risk Management, Sarah P. Church, Michael Dunn, Nicholas Babin, Amber Saylor Mase, Tonya Haigh, Linda Stalker Prokopy

Drought Mitigation Center: Faculty Publications

Through the lens of the Health Belief Model and Protection Motivation Theory, we analyzed interviews of 36 agricultural advisors in Indiana and Nebraska to understand their appraisals of climate change risk, related decision making processes and subsequent risk management advice to producers. Most advisors interviewed accept that weather events are a risk for US Midwestern agriculture; however, they are more concerned about tangible threats such as crop prices. There is not much concern about climate change among agricultural advisors. Management practices that could help producers adapt to climate change were more likely to be recommended by conservation and Extension advisors, …

Effects Of A Prescribed Burn On The Adult Butterfly Assemblage Of A Coastal Grassland, J. Nicole Desha, Joseph Colbert, Kimberly M. Andrews, Scott Coleman, C. Tate Holbrook

Georgia Journal of Science

Coastal grasslands are globally threatened by development and natural succession. In the southeastern United States, these increasingly rare ecosystems are being managed using prescribed fire, but ecological responses to fire management are largely unknown, particularly among nontargeted species. We tested for short-term effects of controlled burning on the abundance and species richness of adult butterflies, which utilize coastal grasslands for nectaring resources and as migratory stopover sites. In February 2015, four plots of coastal grassland on Little St. Simons Island, GA were burned and paired with unburned (control) plots of equal size. Throughout the following summer-fall flight season, we conducted …

Acoustic Signatures Of Habitat Types In The Miombo Woodlands Of Western Tanzania, Sheryl Vanessa Amorocho, Dante Francomano, Kristen M. Bellisario, Ben Gottesman, Bryan C. Pijanowski

The Summer Undergraduate Research Fellowship (SURF) Symposium

The Miombo Woodlands of Tanzania comprise several habitat types that are home to a great number of flora and fauna. Understanding their responses to increasing human disturbance is important for conservation, especially in places where people depend so directly on their local ecosystem services to survive. Soundscapes are a powerful approach to study complex biomes undergoing change. The sounds emitted by soniferous fauna characterize the acoustic profile of the landscapes they inhabit such that habitats with the highest acoustic abundance are considered as the most diverse and possibly more ecologically resilient. However, acoustic variability within similar habitat types may pose …

Responses Of Agroecosystems To Climate Change: Specifics Of Resilience In The Mid-Latitude Region, Menas Kafatos, Seung Hee Kim, Chul-Hee Lim, Jinwon Kim, Woo-Kyun Lee

Mathematics, Physics, and Computer Science Faculty Articles and Research

This study examines the productivity and resilience of agroecosystems in the Korean Peninsula. Having learned valuable lessons from a Chapman University project funded by the United States Department of Agriculture which concentrated on the semi-arid region of southwestern United States, our joint Korea—Chapman University team has applied similar methodologies to the Korean Peninsula, which is itself an interesting study case in the mid-latitude region. In particular, the Korean Peninsula has unique agricultural environments due to differences in political and socioeconomic systems between South Korea and North Korea. Specifically, North Korea has been suffering from food shortages due to natural disasters, …

Synergistic Use Of Remote Sensing And Modeling To Assess An Anomalously High Chlorophyll-A Event During Summer 2015 In The South Central Red Sea, Wenzhao Li, Hesham El-Askary, K. P. Manikandan, Mohamed A. Qurban, Michael J. Garay, Olga V. Kalishnikova

Mathematics, Physics, and Computer Science Faculty Articles and Research

An anomalously high chlorophyll-a (Chl-a) event (>2 mg/m3) during June 2015 in the South Central Red Sea (17.5° to 22°N, 37° to 42°E) was observed using Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellite platforms. This differs from the low Chl-a values (<0.5 mg/m3) usually encountered over the same region during summertime. To assess this anomaly and possible causes, we used a wide range of oceanographical and meteorological datasets, including Chl-a concentrations, sea surface temperature (SST), sea surface height (SSH), mixed layer depth (MLD), ocean current velocity and aerosol optical depth (AOD) obtained from different sensors and models. Findings confirmed this anomalous behavior in the spatial domain using Hovmöller data analysis techniques, while a time series analysis addressed monthly and daily variability. Our analysis suggests that a combination of factors controlling nutrient supply contributed to the anomalous phytoplankton growth. These factors include horizontal transfer of upwelling water through eddy circulation and possible mineral fertilization from atmospheric dust deposition. Coral reefs might have provided extra nutrient supply, yet this is out of the scope of our analysis. We thought that dust deposition from a coastal dust jet event in late June, coinciding with the phytoplankton blooms in the area under investigation, might have also contributed as shown by our AOD findings. However, a lag cross correlation showed a two- month lag between strong dust outbreak and the high Chl-a anomaly. The high Chl-a concentration at the edge of the eddy emphasizes the importance of horizontal advection in fertilizing oligotrophic (nutrient poor) Red Sea waters.

Effects Of Climate Warming On Net Primary Productivity In China During 1961–2010, Fengxue Gu, Yuandong Zhang, Mei Huang, Bo Tao, Rui Guo, Changrong Yan

Plant and Soil Sciences Faculty Publications

The response of ecosystems to different magnitudes of climate warming and corresponding precipitation changes during the last few decades may provide an important reference for predicting the magnitude and trajectory of net primary productivity (NPP) in the future. In this study, a process-based ecosystem model, Carbon Exchange between Vegetation, Soil and Atmosphere (CEVSA), was used to investigate the response of NPP to warming at both national and subregional scales during 1961–2010. The results suggest that a 1.3°C increase in temperature stimulated the positive changing trend in NPP at national scale during the past 50 years. Regardless of the magnitude of …

The Effects Of Isoprene Emission From Native And Invasive Trees On Local Air Quality, Aarti P. Mistry

DePaul Discoveries

Biogenic volatile organic compounds (BVOC) are the second-most abundant reactive gasses emitted into the atmosphere by the biosphere. Isoprene is a BVOC produced by the process of photosynthesis from vegetation and is emitted from plant leaves. Isoprene is a hydrocarbon that combines with oxides of nitrogen in the atmosphere to create ozone in the troposphere, an air pollutant. Invasive trees alter ecosystems and affect native tree populations. Invasive tree species in the Chicagoland area are outcompeting native tree species and expanding rapidly. The effect of isoprene emissions on air quality is a well-researched area in the atmospheric science community, however, …

Determining Effects Of Heat Stress On Illinois Soybeans, Ava Alford, Charles Burroughs, Lisa Ainsworth

PRECS student projects

Rising global temperatures affect our food supply. Heat stress could negatively affect photosynthesis, plant development, and flower and pod production. The research summarized in this poster aims to better understand which physiological processes in soybeans are negatively affected by heat stress in order to identify targets for future soybean production. Using infrared heat arrays, two different cultivars of Illinois soybeans are continually heated. Throughout the experiment, data is collected on photosynthesis, leaf area index, and overall productivity of the plant. At the end of the growing season, all of the soybean plants will be harvested and their biomass will be …

Sustainability Assessment Of U.S. Beef Production Systems, Greg Thoma, Ben Putman, Marty Matlock, Jennie Popp, Leah English

Food Systems

With increasing public concern and awareness of agricultural sustainability issues, comprehensive methodologies such as life cycle assessment are required to benchmark the beef industry and identify areas of opportunity for continuous improvement. To that end, the Beef Checkoff completed a retrospective sustainability assessment benchmark in 2013 by using Eco-efficiency analysis to compare the years 2005 and 2011. At the time of the analysis, the methodology used was the most up-to-date and comprehensive – indeed the analysis remains one of the only complete cradle-to-grave assessments of the U.S. beef industry. In 2015, a further refined version of the Eco-efficiency analysis was …

Landowner And Practitioner Perspectives On Private Land Conservation Programs, Michelle L. Lute, Caitlyn R. Gillespie, Dustin R. Martin, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Efforts to reverse declines in native grasslands benefit from agricultural policies that encourage private land conservation. The U.S. Department of Agriculture’s Conservation Reserve Program (CRP) improved conservation across landscapes but enrollment has declined. We used sequential exploratory mixed methods to compare landowner and conservation practitioners’ perceptions, evaluate perceived benefits, and identify potential improvements to CRP. Focus groups of practitioners informed a quantitative survey of landowners who had properties >160 total acres in Nebraska. Results suggest potential misalignment in perceptions between practitioners and landowners. Practitioners were concerned that conservation, especially of wildlife, was secondary to profit. But the majority of landowners …

Regime Shifts And Panarchies In Regional Scale Social-Ecological Water Systems, Lance Gunderson, Barbara Cosens, Brian C. Chaffin, Craig Anthony (Tony) Arnold, Alexander K. Fremier, Ahjond S. Garmestani, Robin Kundis Craig, Hannah Gosnell, Hannah E. Birge, Craig R. Allen, Melinda Harm Benson, Ryan R. Morrison, Mark C. Stone, Joseph Hamm, Kristine Nemec, Edella C. Schlager, Dagmar Llewellyn

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

In this article we summarize histories of nonlinear, complex interactions among societal, legal, and ecosystem dynamics in six North American water basins, as they respond to changing climate. These case studies were chosen to explore the conditions for emergence of adaptive governance in heavily regulated and developed social-ecological systems nested within a hierarchical governmental system. We summarize resilience assessments conducted in each system to provide a synthesis and reference by the other articles in this special feature. We also present a general framework used to evaluate the interactions between society and ecosystem regimes and the governance regimes chosen to mediate …

Financial Assessment Of Agricultural Lands At Risk To Coastal Salt Marsh Migration In Relation To Climate Change Induced Sea Level Rise In Dorchester County, Maryland, Jewell Porter

International Development, Community and Environment (IDCE)

The increasing rate and effects of sea level rise is a major environmental concern in the Chesapeake Bay. This paper evaluates the impacts of rising sea level on coastal salt marshes and the surrounding agricultural lands at risk in Dorchester County, Maryland to build off existing environmental monitoring work performed by NOAA’s Sentinel Site Program. The results of the spatial analysis were used to estimate monetary benefits to incentivize farmers to protect these marshes by making their land available for marsh migration to occur. Looking at three scenarios of sea level rise and marsh migration, grain crops (corn, soybeans, and …

Environmental And Climatic Constraints On Large-Scale Camelina Production In Eastern Arkansas, Benjamin Robert Tracy

Graduate Theses and Dissertations

Camelina sativa is a cold weather crop that is typically grown in semi-arid environments in the Western United States, usually as a spring crop, but sometimes during the winter. Research analyzing climate data and soil hydrology is important to better understand the environmental and terrain conditions necessary for Camelina farming wherever it is proposed for large-scale production. This study focused on various conditions and constraints pertaining to the potential for Camelina as a crop biofuel in Eastern Arkansas. Due to interest in the economic potential of crop biofuels in this area, and in particular the low input costs for Camelina, …

Using Freshwater Mussels As An Indicator For River Water Quality, Joseph Gerland, Will Titone, Ariana Clark, Brad Michael

Undergraduate Research Conference

Using the freshwater mussel to monitor water quality is a practical and advantageous way to use nature’s indicator species. River water quality is an important measurement that is constantly monitored for many purposes. The sampling involved with monitoring can be very costly and time-consuming. Using mussels as indicator species could save money and time. So, this project has been dedicated to exploring the applications and reality of using freshwater mussels to monitor river quality.

The Coastal Monitor: Vol 2. No 1., John Tanacredi Ph.D.

The Coastal Monitor

There is something enchanting and vibrant about viewing the coast. Every day at CERCOM we are welcomed by either a vivid sunrise, a view of the barrier island Fire Island and a blending of the sky across the horizon, ultimately flooding the Great South Bay with either clouds or sunshine that reveals the Bay’s surface as either shimmering with sunlight, or an integration of sky and water as an endless ocean. I don’t normally wax poetic but the varying sights along the near shore ocean and this embayment beckon our scientific inquisitiveness. What’s below the surface water? How do animals …

A Web Based Real Time Nitrogen Leaching Calculator, Saeideh Samani, Babak Samani, Haishun Yang

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

While nitrogen (N) is an essential nutrient for corn, its leaching to ground water is an serious environmental issue and a hazard to public health. N leaching is closely linked to weather factors, especially rainfall. Prediction of N leaching in cropping systems is critical to improvement of crop management and reduction of N leaching. The objective of this project is to develop a web app that predicts in real-time mode N leaching across Nebraska using real-time weather data.

We are in the processing of developing the web app and expect a prototype to be running in 2017 cropping season. Field …

Kepone In The James River Estuary: Past, Current And Future Trends, Michael A. Unger, George G. Vadas

Reports

In late 1975, a manufacturing facility in Hopewell, VA had not only exposed workers to the chlorinated pesticide, Kepone, but had also severely contaminated the James River estuary. To assess the potential risk to the public, Virginia initiated a finfish-monitoring program in late 1975. Over the next 40 years over 13,000 samples were collected from the James River and Chesapeake Bay and analyzed for Kepone. Kepone production was eventually banned worldwide. The average Kepone concentrations found in most species began falling when the production of Kepone ended, but the averages remained over the action limit of 0.3 mgkg^-1 until …

What, Where, Why: A Survey Of Felidae Populations At Enashiva Nature Refuge, Tanzania, Lucrecia Aguilar

Independent Study Project (ISP) Collection

As felid populations worldwide continue to deteriorate due to human activities, understanding how felid species utilize various landscapes, along with what factors affect such use or disuse, becomes essential to the preservation of these species. While previous research has examined felid populations around the world, many species and locations remain understudied. This study surveyed felid species at Enashiva Nature Refuge (ENR) in the Serengeti-Mara ecosystem to determine (1) what felid species are present at ENR, (2) where these species generally occur, and (3) why felids reside at ENR in low or high numbers. Through the use of opportunistic camera trapping, …

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Modeling Gross Primary Production Of Midwest Maize And Soybean Croplands With Satellite And Gridded Weather Data, Gunnar Malek-Madani

Department of Geography: Dissertations, Theses, and Student Research

The gross primary production (GPP) metric is useful in determining trends in the terrestrial carbon cycle. Models that determine GPP utilizing the light use efficiency (LUE) approach in conjunction with biophysical parameters that account for local weather conditions and crop specific factors are beneficial in that they combine the accuracy of the biophysical model with the versatility of the LUE model. One such model developed using in situ data was adapted to operate with remote sensing derived leaf area index (LAI) data and gridded weather datasets. The model, known as the Light Use Efficiency GPP Model (EGM), uses a four …