Life Sciences Commons^™

A Computational Exploration: Docking Analysis Of Compounds From Foeniculum Vulgare As Potential Aromatase Inhibitors For Endometriosis Candidate Therapy, Dwi Anita Suryandari, Puji Sari, Hadi Sunaryo, Khaerunissa Anbar Istiadi

Indonesian Journal of Medical Chemistry and Bioinformatics

Aromatase inhibitors (AI) have controlling symptoms and size of endometriotic implants, making them a promising second-line therapy for endometriosis treatment.pretreatment with letrozole, an AI, combined with leuprolide acetate and resveratrol has been found to improve in vitro fertilization (IVF) outcomes in women mild endometriosis.in this study we screening and analysis of ten phenolic compounds from Foeniculum vulgare using molecular docking with Mcole server.from this results showed that three phenolic trans resveratrol (TR), caempherol coumaril (CC) have low gibbs energy compare with resveratrol (R). The binding modalities of compound TR and compound R were hydrogen-bonding between the hydroxyl and oxygen atom …

In Silico Prediction Of Sodium-Glucose Co-Transporter-2 (Sglt2) Inhibition Activity By Allium Fistulosum Compound Based On Skelspheres Molecular Descriptor, Rudy Heryanto, Aryo Tedjo, Dimas Noor

Indonesian Journal of Medical Chemistry and Bioinformatics

The Sodium-Glucose co-transporter-2 (SGLT2) inhibitor represents a novel agent for the treatment of type 2 diabetes. Drugs of this class function by inhibiting glucose reabsorption in the kidneys, thereby controlling blood glucose levels. It is known that SGLT2 inhibitors activate the AMPK signaling pathway by increasing the expression and activity of AMP-activated protein kinase (AMPK). In vivo tests have demonstrated that ethanolic and aqueous extracts of Welsh onion leaves (Allium fistulosum L) can reduce body weight, liver weight, adipocyte size, and enhance AMP-activated protein kinase (AMPK) expression. In this study, the inhibitory activity (IC50) of compounds within Allium fistulosum against …

Metabolomic Insights Into Tuberculosis: Machine Learning Approaches For Biomarker Identification, Miftahul Khair Akbar, Arief Aulia Rahman

Indonesian Journal of Medical Chemistry and Bioinformatics

The lung parenchyma is largely impacted by the infectious condition known as pulmonary tuberculosis (pulmonary TB) when the immune system creates a wall around the germs in the lungs, a tiny, hard bulge known as a tubercle develops, earning the disease the name tuberculosis. Although the majority of TB germs target the lungs, they can also harm other bodily organs. The identification of TB biomarkers, which are crucial for diagnosis, treatment monitoring, risk analysis, and prognosis, has been the subject of extensive research. Differences in metabolites between normal cells and tuberculosis are considered to be able to support the diagnosis …

Serum Metabolomic Profiling For Colorectal Cancer Using Machine Learning, Ria Nur Puspa Sari, Diah Balqis Ikfi Hidayati, Arleni Bustami

Indonesian Journal of Medical Chemistry and Bioinformatics

Background: Colorectal cancer is one of the deadliest diseases with a high prevalence worldwide and is characterized by the appearance of adenomatous polyps in the colon mucosa which are at high risk of developing into colorectal cancer. This study aims to use serum metabolites as promising non-invasive biomarkers for colorectal cancer detection and prognostication. Differences in serum metabolites in patients with adenomatous polyps, colorectal cancer, and healthy controls are considered to be able to support the prognosis of colorectal cancer. Methods: Metabolite dataset is taken from the Metabolomic Workbench. Analysis and validation are carried out in silico using machine learning …

Therapeutic Options For Covid-19: Drug Repurposing Of Serine Protease Inhibitor Against Tmprss2, Mohammad Wildan Abiyyi, Surya Dwira, Arleni Bustami, Linda Erlina

Indonesian Journal of Medical Chemistry and Bioinformatics

The SARS-Coronavirus 2 (SARS-CoV-2) outbreak is a serious global public health threat. Researchers around the world are conducting mass research to control this epidemic, starting from the discovery of vaccines, to new drugs that have specific activities as antivirals. Drug repurposing is a potential method of using drugs with known activity for reuse as COVID-19 therapy. This method has the advantage that it can reduce costs and also the duration in the development of potential drugs. The initial step in drug repurposing can be done computationally to determine the effectiveness and specificity of the drug on the target protein. Molecular …

Virtual Screening On Indonesian Herbal Compounds As Sars-Cov-2 Spike (S2) Glycoprotein Inhibitors: Pharmacophore Modelling & Molecular Docking Approaches, Syailendra Karuna Sugito, Artha Uli Cristina, Putri Saskia Harimurti, Gabriella Regita Cendani, Fauzi Azhar Insani, Linda Erlina, Rafika Indah Paramita, Fadilah Fadilah

Indonesian Journal of Medical Chemistry and Bioinformatics

Background: There are still no specific treatments for coronavirus disease (COVID-19) until present days. Several studies have been conducted to determine whether herbal medicine can be an option to be used as a definitive medicine for COVID-19. S2 subunit of spike protein which is responsible for SARS-CoV-2 entry to the host cell, is a potential drug target to inhibit the viral infection. In this study, we aimed to find some compounds from the HerbalDB database that have potential as SARS-CoV-2 spike (S2) glycoprotein inhibitor.

Methods: The 6LXT protein was used as the target protein. The procedure in this study consisted …

Urban Farming: Empowerment To Increase Economic, Education, And Nutritional Benefit For The Sub-Urban Community, Nasruddin Nasruddin, Yusuf Donner Dwiyantama, Banu Muhammad, Anom Bowalaksono, Dian Ayubi, Sarah Islamiati Pertiwi

ASEAN Journal of Community Engagement

This article discusses the urban farming program at Sekolah Master in Beji, Depok, Indonesia, which aims to provide the community with broader benefits, such as economy, education, and increased nutritional value. The project involves planting method that was introduced to this school community. The program itself consists of several stages, starting from the preparation—dissemination of the program and designing a plan for the greenhouse, the implementation—constructing the greenhouse and installing the automatic water system, planting the vegetation, and monitoring and evaluation of the program. Eventually, an evaluation of the successful program is required to determine whether the program can be …

Chitosan Oligosaccharides As A Nanomaterial Platform: Biological Properties And Applications In The Biomedical And Pharmaceutical Fields, Muhamad Alif Razi

Makara Journal of Science

Chitosan oligosaccharides (COS) have been introduced as marine-derived biomaterials with potential health benefits and good water solubility properties. This study presents an overview of the promising nanomaterial platform for biomedical and pharmaceutical applications of COS. The health benefits of COS, primarily their antioxidant and protective effects, anti-inflammatory activity, antidiabetic properties, and cholesterol-lowering effects are discussed. Furthermore, the promising recent articles on specific topics such as drug delivery systems and nanobiomaterials, are highlighted

Estimation Of The Bubble Point Pressure Of Multicomponent Reservoir Hydrocarbon Fluids, Benjamin Sunday Usen, Chidi Obi

Makara Journal of Science

This study developed a novel C-sharp (C#) programming language for the estimation of bubble point pressure (BPP) of various hydrocarbon mixtures at equilibrium state. The methodology was based on vapor–liquid equilibrium calculation using Peng Robinson equation of state implementation, thermodynamic equilibrium calculation and Newton-Raphson’s method for the successive substitution of the unknown variables. The equal fugacity constraint can be satisfied by obtaining the equilibrium which serves as a criterion for two or more phases to exist at equilibrium. The problem was resolved by searching for a pressure that will satisfy the two constraints. Complex calculation was performed by successively substituting …

Synthesis Of Alginate/Hydroxyapatite Beads For Acetaminophen Delivery, Anesylvia Angan, Nonni Soraya Sambudi

Makara Journal of Science

Conventional drug delivery systems usually involve the intake of multiple drugs, which could amplify the risk of overdosing. Acetaminophen is a widely used pain relief substance that is prone to accidental overdosing. Hence, a controlled drug delivery system is needed to ensure its efficacy. A nanocomposite hydroxyapatite/alginate system that was used as a drug carrier for acetaminophen was synthesized through the sol-gel method, and the mechanism underlying its controlled drug delivery was investigated. Spherical nanocomposite bead samples were synthesized by incorporating 5 wt%, 10 wt%, and 15 wt% hydroxyapatite into mixtures containing alginate. The mixtures were then dropped into calcium …

Analysis And Visualization Of Molecular Docking 2hi4 Protein, Innas Widiasti

Indonesian Journal of Medical Chemistry and Bioinformatics

The crystal structure of the human microsomal complex P450 1A2 with alpha-naphthoflavone, a cytochrome P450 (CYP) enzyme is particularly important, as it is abundant in the human liver and alters a more diverse xenobiotic array than any other group of metabolic enzymes. CYP1A2 is abundantly found in the liver and involved in the metabolism of about 10% of clinically used drugs metabolized by CYP enzymes. The current drug discovery and development mostly uses high-throughput screening (HTS). However, this regular method is time-consuming and costly. To address the issue, an advanced drug discovery and development method namely chemical compound database screening …

Hydrochemistry Of High-Mountain Pamir Rivers: Formation, Changes And Influence On The Chemical Composition Of Irrigation Water, Parviz Inomovich Normatov, Inom Normatov, Akobir Karimzoda, Rano Eshankulova, Ayubdzon Normatov, Nurmakhmad Shermatov

Journal of Environmental Science and Sustainable Development

The purpose of the research is to analyze the prospects for the agriculture development in the Central Asian region and Tajikistan in particular, in terms of identifying the main favorable and constraining factors for the further agriculture development. The Pyanj river is one of the main tributaries of the Transboundary Amu Darya River in the Central Asian region, whose waters are a source of drinking water supply for the population and 80% used for irrigation of agricultural land. The trend of deteriorating water quality of Central Asian River systems recently has been increasing, and monitoring water quality from the formation …

Flood Analysis And Hydraulic Competence Of Drainage Structures Along Addis Ababa Light Rail Transit, Moses Kiwanuka, Seleshi Yilma, Joel Webster Mbujje, John Bosco Niyomukiza

Journal of Environmental Science and Sustainable Development

The occurrence of flooding events and the associated risks are increasing in the urban areas of most developing countries. Flooding in any circumstance causes major stresses on affected area’s economic, social and environmental regimes. Therefore, the current study presents a flood analysis and hydraulic competence of existing drainage structures on some selected roads of Addis Ababa City, after integration with Addis Ababa Light Rail Transit (AALRT) Drainage Systems. The existing side drains and cross drainage structures located within the study area were inspected and assessed to ascertain different aspects relating to their performance. Different watersheds were delineated. Hydrological analysis was …

Pillars Of Sustainable Development–Land Capability And Conceptual Project Design, Ian D. Hollingsworth

Journal of Environmental Science and Sustainable Development

Conserving land capability is a pillar of sustainable development strategy. Land units comprising unique combinations of native vegetation, soils, geology, and landforms are used to interpret local environmental processes and land capabilities. An emerging practice is extrapolation modeling of edaphic parameter surfaces in Digital Soil Mapping (DSM) using statistical correlation. Commercial studies of land capability for sustainable development, including a mine closure in a national park, another closure for grazing land restoral, urban stormwater flood mitigation, and wind farm development in plantation forestry, are presented to illustrate applications and review the utility of DSM data. The first case, a mine …

Effect Of Surfactant Addition On The Dispersion And Antioxidant Performance Of Pyrogallol In Biodiesel, Silvya Yusri, Mohammad Nasikin, Hery Sutanto

Makara Journal of Science

Biodiesel is one of the most feasible energy sources that can be used as a replacement for fossil fuel. Biodiesel has several advantages over conventional fuels because of its availability, renewability, and high combustion efficiency. However, biodiesel that contains unsaturated fatty acid methyl esters is prone to oxidation during the blending process and storage period. The complete oxidation reaction of biodiesel produces insoluble gums that could potentially plug the fuel engines. This reaction has become the main barrier for biodiesel to compete with other biofuels. Among several methods, the addition of antioxidants is the most cost-effective method to prevent the …

Indonesia Natural Mineral For Heavy Metal Adsorption: A Review, Grandprix T. M. Kadja, Moh Mualliful Ilmi

Journal of Environmental Science and Sustainable Development

Indonesia has abundant mineral resources used as natural adsorbent materials for the absorption of heavy metal. Among these are natural zeolites, clay, and ashes. These natural materials showed high performance adsorption capacity with respects to their low cost and high availability. Several research reports had been published for studying the performance of the natural materials as adsorbent of several heavy metals i.e., Hg, Pb, Fe, Cd, Cr, Zn, Ni, and Cu by examining the effect of various factors, including pH, contact time, initial concentration, temperature, and dosage. Furthermore, to determine the adsorption rate, mechanism, and efficiency of natural materials in …

Function, Meaning, And Message Of The Natural Environtment In The Story Of Keong Mas, Adinda Bunga Utami, Nanny Sri Lestari

International Review of Humanities Studies

This research discusses the meaning and function of the natural environment in one folk tale that is well known in the Javanese community. This folktale is known in all circles of society, despite having social differences. An interesting problem in this folklore is the placement of functions and environmental meanings as the main elements of stories or tales. The focus of this research is to raise the function and meaning of the natural environment contained in one story of Keong Mas. This study aims to explain carefully the function and meaning of the natural environment which is the background of …