Life Sciences Commons^™

Two Genetic Effects At The Irf5/ Tnpo3 Locus Are Independently Associated With The Development Of Specific Lupus Symptoms, Samantha Hawtrey

Mahurin Honors College Capstone Experience/Thesis Projects

Systemic Lupus Erythematosus (SLE) is an autoimmune disorder that can affect every tissue in the body. Single nucleotide polymorphisms (SNPs) in the IRF5 and TNPO3 genes are statistically associated with the development of SLE. My research identified correlations between IRF5/TNPO3 SNPs and specific lupus symptoms. Logistic regression analyses were conducted using 101 genetic variants in the IRF5/TNPO3 region that were genotyped in over 6,000 lupus patients of different ethnicities, with admixture covariates applied. Three clinical phenotypes displayed significant correlation (p < 1.6x10-5) in subjects of European ancestry. For each of these phenotypes, a step-wise conditional analysis was conducted using two lupus associated single nucleotide polymorphisms (SNPs) at this genetic loci. In Europeans, lupus disease onset (p-valueEU=2.44x10-16, OR=0.67*) and the presence of anti-Ro (p-valueEU=2.09x10-7, OR=0.67) and anti-dsDNA (p-valueEU=4.15x10-7, OR=0.75) antibodies were associated with SNPs in the IRF5/TNPO3 genes. SNPs in the IRF5 promoter and those spanning IRF5 and TNPO3 were both associated with disease onset. The presence of anti-Ro and anti-dsDNA antibodies is only associated with SNPs in the IRF5 promoter. Genetic variants at the IRF5/TNPO3 locus are associated with lupus disease onset and production of anti-dsDNA and anti-Ro antibodies in lupus patients. SNPs in the promoter region of iii IRF5 (associated with rs4728142) and SNPs spanning the IRF5 and TNPO3 genes (associated with rs12534421) contribute independently to these symptoms.

Population Genetics Of The Western Toad (Bufo Boreas) In The Central Valley Of California, Morgan Murrell

Mahurin Honors College Capstone Experience/Thesis Projects

A worldwide decline in amphibian populations has intensified the need for data comparing the influence of habitats on population dynamics and the potential for local extinction. From a conservation perspective it is important to understand the connections between ecology, geography, and genetics across landscapes that are increasingly affected by human influences and other uncontrollable environmental events such as climate change. The purpose of this study is to examine the landscape-level genetic patterns of Western toads, Bufo (Anaxyrus) boreas, and to conclude if gene flow is occurring between ponds. This will allow conservation practitioners to understand geographic features that might impede …

Comparisons Of Genetic Diversity Among Disjunct Populations Of Magnolia Tripetala, Victoria A. Gilkison

Mahurin Honors College Capstone Experience/Thesis Projects

Plant ranges are often made up of core areas where the distribution is continuous and the population density is high with small disjunct populations at the margins of the core. One well-studied type of disjunct population is formed by long distance dispersal as plants migrate away from disjunct Pleistocene refugial populations. The retreat of the Wisconsinan glaciation resulted in the outward dispersal of many plant species from their refugial locations to areas with suitable habitat. Many plants expanded their ranges through rare-long-distance dispersal.

This study used microsatellites to compare the genetic diversity, inbreeding levels, and gene flow frequency of disjunct …

Habitat Use Analysis Of A Reintroduced Black Rhino (Diceros Bicornis) Population, John H. Clark

Mahurin Honors College Capstone Experience/Thesis Projects

Prior to the 20^th century black rhinos (Diceros bicornis) were the most prevalent rhino species with population estimates reaching 850,000 individuals (Rhino Resource Center, May 2013). The black rhino underwent the single fastest and most severe decline of all large mammal species from the 1960s to the 1990s, resulting in current population estimates of 3,600 animals (Emslie, 2012; Hillman-Smith and Groves, 1994). Reintroduction efforts are taking place to restore this species and 19 animals were reintroduced to a Kruger Associated Private Nature Reserve, six of these individuals were accessible for study. Animals were monitored on a regular …

Trends In Avian Populations Of Kentucky And Implications In Conservation, Sara K. Wigginton

Mahurin Honors College Capstone Experience/Thesis Projects

The North American Breeding Bird Survey (BBS) and other avian monitoring projects have been used as evidence that many bird species are declining. Two guilds which have seen major declines are the grassland obligate and woodland species (Wentworth et al 2010; Peterjohn and Sauer 1994). Some species have been experiencing an increase, including the Brown-headed Cowbird; a brood-parasite which can cause decreased fitness in host species (Brittingham and Temple 1983). BBS data collected in Kentucky from 1998-2011 was used for statistical analysis for this project. This data was used to answer 4 questions. The first was did the Kentucky Upper …

Molecular Mechanics Of Oxaliplatin And An Oxaliplatin Derivative With Their Relevant Biological Targets, Daniel C. Jackson

Mahurin Honors College Capstone Experience/Thesis Projects

Molecular mechanics and dynamics calculations were used to simulate reactions of oxaliplatin and Pt(Me₂dach)(oxalate) with methionine and guanine, where Me₂dach is N,N-dimethyl-1,2-diaminocyclohexane. The results were consistent with steric effects that resulted in chelation when Pt(Me₂dach)(oxalate) reacted with N-acetylmethionine experimentally (Williams et al., 2013). The energy difference due to ligand bulk that was predicted using molecular mechanics was also consistent with experimental results: oxaliplatin’s ligand bulk did not prevent the formation of bis products with 9-ethylguanine and N-acetylmethionine, but the ligand bulk of Pt(Me₂dach)(oxalate) did prevent bis product formation with N-acetylmethionine, resulting in …

Prophylactic Effect If Growth Hormone On Zebrafish Auditory Hair Cell Damage, Mackenzie C. Perkins

Mahurin Honors College Capstone Experience/Thesis Projects

Growth hormone (GH) has been shown to play a role in and improve hair cell regeneration when injected intraperitoneally in zebrafish post-sound exposure. The purpose of this study was to examine whether exogenous GH has a prophylactic effect on auditory hair cell damage when injected prior to acoustic trauma. Groups of zebrafish were injected with either GH or buffer. Immediately following the injection, auditory hair cell damage was induced through exposure to acoustic overstimulation. Hearing tests were then performed on the fish by measuring auditory evoked potentials. Then, the fish ears were dissected either immediately post-trauma or at one, two, …

Rainwater Harvesting: Examining The Potential Of Rainfall Collection As A Stormwater Best Management Practice And A Supplement To Municipal Water At Wku, Ashley C. Mccloughan

Mahurin Honors College Capstone Experience/Thesis Projects

This study seeks to quantify the potential amount of rainwater that could be harvested from Western Kentucky University’s main campus roof spaces and to evaluate the potential environmental and economic value of such an initiative in light of the global water crisis. Roof areas and historic rainfall data were used to enumerate the potential quantity of water averted by the selected buildings. Limited literature exists on the potential for rainwater harvesting in reducing quantity of surface runoff and what that means for stormwater management, so an evaluation was performed on the implications these installations could have specifically for WKU’s stormwater …