Life Sciences Commons^™

Response Of Fishes To Restoration Projects In Bayou St. John Located Within The City Of New Orleans, Louisiana, Including Hydrological Characterization And Hydrodynamic Modelling, Patrick W. Smith

University of New Orleans Theses and Dissertations

Quantifying the impacts of restoration on coastal waterways is crucial to understanding their effectiveness. Here, I look at the impacts of multiple restoration projects on urban waterways within the city limits of New Orleans, LA, with an emphasis on the response of fishes. First I report the effects of two projects designed to improve exchange down estuary on the hydrologic characteristics of Bayou St. John (BSJ). Within BSJ, flow is dominated by subtidal wind driven processes. Removal of an outdated flood control structure did not appear to alter exchange in BSJ, but removal combined with sector gate openings did. I …

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

Evaluation Of Reproductive Strategies In Captive California Yellowtail (Seriola Dorsalis) Using Genetic Parentage Analyses, Elizabeth K. Smith, Mark Drawbridge Ms, John Hyde Phd, Geoffrey Morse Phd

Theses

A good understanding of spawning dynamics of species in aquaculture is vital in order to maximize egg production and quality as well as efficient allocation of food and space resources. The breeding program of California yellowtail (CYT; Seriola dorsalis previously Seriola lalandi) at Hubbs-SeaWorld Research Institute (HSWRI) is set up such that up to 30 wild caught brood fish can broadcast spawn in a group setting, just as CYT reproduce in the wild. The population of brood fish were originally caught offshore from Southern California, and are maintained under ambient sea water and natural lighting conditions. The spawning season …

Neurobehavioral And Gene Expression Effects Of Early Embryonic Methylmercury Exposure In Yellow Perch (Perca Flavescens) And Zebrafish (Danio Rerio) Larvae, Francisco Xavier Mora Zamorano

Theses and Dissertations

Methylmercury (MeHg) is a pervasive and persistent neurotoxic environmental pollutant known to affect the behavior of fish, birds and mammals. The present study addresses the neurobehavioral and gene expression effects of MeHg in yellow perch (Perca flavescens) and zebrafish (Danio rerio) embryos. The rationale for this study originated from an interest to understand the behavioral and molecular phenotypes of environmental MeHg exposure in the yellow perch, an ecologically and economically relevant species of the North American Great Lakes region. Both MeHg and the yellow perch coexist in a common ecosystem: the North American Great Lakes. However, the effects of this …

Grey (Halichoerus Grypus) And Harbor Seal (Phoca Vitulina) Bycatch And Depredation In New England Sink-Gillnet Fisheries, Laura N. Sirak

All Theses And Dissertations

Marine mammals interact with commercial fisheries via competition for resources, depredation (feeding on fish caught in gear), entanglement, and bycatch in fishing gear. In New England, gray seals (Halichoerus grypus) and harbor seals (Phoca vitulina) are often taken as bycatch in sink-gillnet fisheries and are believed to depredate fish in gillnets. As seal populations increase, interactions with fisheries are also likely to increase, affecting both seal stocks and the New England fishing industry. This study aims to understand seal bycatch in the New England sink-gillnet fisheries by identifying the spatial and temporal trends in bycatch as …

Automated Aquaponics Design Report, Carson Miller

Honors Theses

Aquaponic systems offer a solution to environmentally conscious, fiscally responsible individuals who wish to produce food products without the use of pesticides, genetic modification, or non-renewable resources. Further, the proliferation of inexpensive microprocessors and high quality sensors offers an opportunity for dynamic monitoring and error correcting within the aquaponic system. These aquaponic and electronic systems will be combined in this project to create an electronically monitored aquaponic ecosystem.

Comparing Pseudo-Environmental And Horizontal Plus Pseudo-Environmental Transmission Of A Probiotic Janithinobacterium Lividum Between Green Frog Tadpoles, Stephen Simonetti

Senior Honors Projects, 2010-2019

The gram-negative bacteria, Janthinobacterium lividum (J.liv) is able to kill the pathogenic fungus known as Batrachochytrium dendrobatidis (Bd), which is known to be causing massive amphibian decline worldwide. The purpose of this research was to identify the ability of the probiotic bacteria, Janthinobacterium lividum (J.liv), to be horizontally transmitted from individual to individual and/or pseudo-environmentally transmitted from individual to environment and back to individual between Lithobates clamitans (green frog) tadpoles. Based on previous findings I hypothesized that pseudo-environmental and horizontal transmission will occur in tadpoles. This would be important for helping stop the decline of amphibians because it would provide …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

Ion Regulatory Capabilities Of The European Green Crab, Carcinus Maenas, Exposed To Low Salinity Environments: An Investigation Into The Physiological Differences Between Two Color Morphs Across Sex, Anthony Himes

All Theses And Dissertations

The European green crab, Carcinus maenas, is a highly invasive species found throughout the world with severe economic and ecological impacts on the regions it invades. This species occurs in two color morphs: green after molting and red after prolonged intermolt. Physiological variations between these two morphs are well documented across various environmental conditions, but little work has focused on female C. maenas. To assess if the variation between color morphs observed in males persists in females, red and green morphs of each sex were exposed to a constant low salinity environment. Constant low salinity exposure was chosen as it …

An In-Depth Evaluation Of Otolith Zonation And An Ageing Comparison Of Otoliths, Scales, And Pectoral Fin Rays Of Redband Trout (Oncorhynchus Mykiss Gairdneri) And Bluegill (Lepomis Macrochirus), Dennis A. Daw

Boise State University Theses and Dissertations

Redband Trout (Oncorhynchus mykiss gairdneri), a native subspecies of Rainbow Trout residing east of the Cascade Mountains, USA, are a popular sport fish in much of its range. Bluegills (Lepomis macrochirus) are one the most important recreational fishes in North America, and are also sought by anglers in many Idaho waters. There is extensive confusion surrounding the timing and interpretation of otolith zones, specifically, which zone represents fast growth and which represents slow growth. Further, otoliths are a lethal sampling method and regardless of population status, many fisheries biologists prefer to use no lethal sampling methods. To determine if the …

Round Goby-Induced Changes In Young-Of-Year Yellow Perch Diet And Habitat Selection, Christopher John Houghton

Theses and Dissertations

A critical step in the recruitment of age-0 yellow perch (Perca flavescens) to the

adult population occurs during their transition to the demersal stage. If larval age-0

yellow perch survive recruitment bottlenecks imposed by alewife (Alosa

pseudoharengus) and dreissenid mussels, they transition to demersal feeding in late

August and early September. In Lake Michigan, demersal age-0 yellow perch seek

rock substrate where they begin feeding on benthic invertebrates in late summer.

That research preceded the invasion of the round goby (Neogobius melanostomus), a

species that can have negative impacts on benthic forage. The current study used

the spread of round …

Effects Of Pre-Release Physical Stressors On Post-Release Success Of Hatchery-Reared Spotted Seatrout, Taylor Westbrook Guest

Master's Theses

Alteration of habitat associated with coastal development and increased demand for food and recreation can result in the depletion of fisheries resources such as the Spotted Seatrout (Cynoscion nebulosus), the Gulf of Mexico’s most popular recreational fish. Stock enhancement, or the release of cultured fish to supplement wild populations, is one potential tool for managing important fisheries resources. Although much effort has gone into marine stock enhancement, the effectiveness of stocking is not well established, and techniques for ensuring success have not been developed. Although the basic biology of the Spotted Seatrout is well known, comparatively little is known about …

Variability In Movement Patterns And Habitat Use Of Two Species Of Pelecaniformes, Caroline Poli

All Theses

Information regarding movement patterns of seabirds is useful for understanding prey abundance and distribution, predicting overlap between bird activity and anthropogenic stressors, and assessing the effectiveness of reserves at protecting nesting or foraging habitat(Cairns 1992, Weimerskirch 2007, Weimerskirch et al. 2010). I examined movement patterns of 40 brown pelicans (Pelecanus occidentalis) satellite tagged in December 2010 in South Carolina, USA, and tracked until July 2013. Birds exhibited individual variability in movement patterns and 25% of individuals remained near the breeding colony during nonbreeding. Birds captured in South Carolina that did migrate wintered as far south as Guatemala, prospected and used …

Finding The Needle And The Haystack: New Insights Into Locating Bog Turtles (Glyptemys Muhlenbergii) And Their Habitat In The Southeastern United States, Theresa Sonja Margareta Stratmann

All Theses

Because rare and cryptic species can be difficult to locate, distribution maps for these species are often inaccurate or incomplete. Bog Turtles (Glyptemys muhlenbergii) are emblematic of this challenge. In fact, conducting surveys of known, historical, and potential Bog Turtle habitat is a specific need stated in the Bog Turtle Northern Population Recovery Plan and in most Comprehensive Wildlife Conservation Strategies of states within the southern range. Therefore we examined ways to better locate Bog Turtle habitat and Bog Turtles within that habitat. First we determined a detection probability for a standardized trapping method so we could effectively survey for …

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

Intestinal Parasite Loads Of Minnows In Eastern Kentucky Streams, Seth H. Bromagen

Morehead State Theses and Dissertations

A Thesis Presented to the Faculty of the College of Science and Technology Morehead State University in Partial Fulfillment of the Requirements for the Degree Master of Science by Seth H. Bromagen on April 13, 2015.

Fish Out Of Salt Water: Smoltification In Subyearling Chinook Salmon From The Laurentian Great Lakes, Steve Sharron

Electronic Thesis and Dissertation Repository

The timing of smoltification in juvenile anadromous salmonids is important to ensure individuals match their preparedness with their migration timing and the optimal conditions in the environment. I performed the first study of smoltification in adfluvial juvenile Chinook salmon naturalized in the Laurentian Great Lakes. In a hatchery study, I found that juveniles from one of these populations have similar patterns of smoltification timing to individuals from anadromous populations. Their Na⁺/K⁺ ATPase activity, a common indicator or smolt status, peaked at 7.7 μmoles ADP/mg protein/hour on July 1 in freshwater. During the peak period, individual body size …

Caracterización De Sedimentos Producidos En Una Explotación Intensiva De Trucha Arco Iris Oncorhynchus Mykiss Walbaum, 1792, Como Un Medio Para Definir Estrategias De Uso Y Manejo Sostenible De Lagunas De Oxidación En Piscicultura, Julio Alberto González Acosta

Maestría en Agrociencias

Para conocer la composición general y puntual de los sedimentos asociados al afluente, laguna de oxidación y efluente de una granja piscícola de clima frío, dedicada a la explotación de trucha arco iris, se realizaron tres muestreos con diferencia de 45 días entre ellos. Para el análisis general de los sedimentos se evaluaron los parámetros de Capacidad de Intercambio Catiónico CIC, calcio, magnesio, potasio, sodio, fósforo disponible, saturación de bases, bases totales, carbono orgánico, materia orgánica, relación carbono: nitrógeno y pH. Se presentó diferencia significativa entre los sitios de muestreo para los parámetros de CIC, fósforo disponible, saturación de bases, …

Proyecto De Factibilidad Para La Producción Y Comercialización Del Pez Arawana En El Piedemonte Llanero Osteoglossum Bicirrhosum, Cristhian Camilo Navarrete Herrera

Zootecnia

Este proyecto se realizó durante primer ciclo del 2014, con el fin de establecer la factibilidad de la producción y comercialización del pez ornamental arawana (Osteoglossum bicirrhosum) en el pie de monte Llanero, Vereda las Mercedes, Sector de la Unión (Villavicencio, Meta). Los objetivos a cumplir fueron determinar si es factible desde el punto de vista técnico y económico la producción del pez arawana, igualmente su comercialización basados en un estudio financiero. Para esto se estudiaron las fases de la reproducción, producción y comercialización teniendo en cuenta la demanda del mercado con énfasis a la exportación acorde con la base …

Detección De Encefalopatía Y Retinopatía Vírica Ver En Cultivos De Cobia Rachycentron Canadum Y Reproductores De Mero Guasa Epinephelus Itajara En El Caribe Colombiano Con La Técnica Transcriptasa Reversa Rt-Pcr, Lina Paola Oliveros Oliveros

Zootecnia

La Encefalopatía y retinopatía vírica, es una enfermedad viral, se caracteriza por anormalidades neurológicas, tales como la natación errática (en espiral, en remolino o con el vientre hacia arriba en posición de descanso), pérdida de apetito, letargia y la vacuolización de los tejidos nerviosos centrales, tiene una amplia distribución geográfica específicamente en climas tropicales y templados, esto afecta a más de cuarenta especies de peces marinos, causando daños económicos significativos a la industria acuícola. El objetivo del presente trabajo fue estandarizar un protocolo de RT-PCR para el diagnóstico de la Encefalopatía y Retinopatía Vírica, a partir de tejidos como retina, …

Population Level Responses To Direct Application Liming In Gyrinophilus Porphyriticus, Shelby Renea Timm

Theses, Dissertations and Capstones

Direct application liming (DAL) has been used to neutralize acidified streams to restore aquatic biota. This mitigation technique has been used globally for decades, yet little data exist on its effects on amphibian populations. My study investigated the effects of liming on amphibians by measuring variability in life histories of larval Gyrinophilus porphyriticus. I collected larvae from six streams in the Monongahela National Forest, West Virginia. I examined the effects of DAL on age structure, and I failed to detect a treatment effect. I used ANCOVAs to examine differences in body condition, body size, and gape size. I observed that …

The Effect Of Silver Nanoparticles On Synaptic Responses In The Lateral Giant Escape Circuit Of The Crayfish, Samantha N. Adkins

Theses, Dissertations and Capstones

The lateral giant neuron in the crayfish is a neuron that controls the reflexive escape response; the context and experience-dependent tuning of this response is critical for survival. Serotonin modulates synaptic responses in this neuron, and social experiences (stress) changes the modulatory role of serotonin. I investigated the mechanisms of induced synaptic response changes and serotonergic modulatory changes after silver nanoparticle exposure to ask if 1) contaminant induced stress changes serotonergic modulation in a manner consistent with social stress and 2) shed light on potential neurotoxic effects of widely used, but poorly understood nanomaterials. Our data show that stress induced …

Monitoring The Land Cover Change In The Historic Range Of Cambarus Veteranus In West Virginia Using A 1973-2013 Landsat Time Series, Emma Martha Arneson

Theses, Dissertations and Capstones

The crayfish Cambarus veteranus is near extinction in its historic range of the Upper Guyandotte River watershed. The biggest threats to C. veteranus are mining and road construction. Mining has been a continuous activity in the southern coalfields where the crayfish has historically been found, yet little is known about how much land cover change the practice has done to the region. Crayfish act as important organisms within aquatic ecosystems and without them, those systems are often degraded. Quantifying the change in land cover is important to understanding threats to C. veteranus for future protection of the crayfish and its …

The Reproductive Biology Of The Finetooth Shark, Carcharhinus Isodon, In The Northwest Atlantic Ocean, Amanda N. Brown

UNF Graduate Theses and Dissertations

Shark fisheries are a multimillion dollar industry in the United States and have significant contributions both recreationally and commercially. In order to maintain this industry, fisheries must be properly managed. An understanding of life history and reproduction is crucial in order to adequately manage shark fisheries. The finetooth shark, Carcharhinus isodon, is a member of the small coastal shark (SCS) fishery complex. It is found in Atlantic waters from South Carolina to Florida and throughout the Gulf of Mexico. This species has recently come under increased fishing pressure and has previously been overfished. New data is needed in order …

Non-Lethal Methods For Assessing Reproductive Status In Bonnethead Sharks (Sphyrna Tiburo), Brenda Carol Anderson

UNF Graduate Theses and Dissertations

Reproductive biology is a necessary element for the management of elasmobranch fisheries. Traditionally, characterization of elasmobranch reproduction has involved lethal sampling to examine gross reproductive structures and development of embryos. However, this method is counterproductive to the conservation of shark populations. One non-lethal alternative is the measurement of serum hormones, which often vary according to reproductive events. Radioimmunoassay (RIA) has been used to measure hormone concentrations in reproductive endocrinology, but can be problematic for researchers. Alternatively, chemiluminescence immunoassays (CLIA) are routinely used for measuring circulating hormone concentrations in low-volume, non-extracted human serum samples. However these assays have not been previously …

The Effects Of Lampricide 3-Trifluoromethyl-4-Nitrophenol Toxicity On The Gills Of Larval Sea Lamprey And Non-Target Rainbow Trout And Lake Sturgeon, Lisa A. Sorensen

Theses and Dissertations (Comprehensive)

The pesticide, 3-trifluoromethyl-4-nitrophenol (TFM), is widely used in the Great Lakes to control invasive sea lampreys (Petromyzon marinus) populations, but much about its sub-lethal effects remains unknown. A better understanding of its toxicity is needed to improve TFM effectiveness and to protect non-target organisms from its potential adverse effects. The objectives of this thesis were to test the following two hypotheses: (1) impairment of mitochondrial ATP production by TFM interferes with ATP-dependent ion-uptake by fish, leading to altered electrolyte balance, and (2) perturbations of gill function by TFM are exacerbated in soft, ion poor water (SW; 40 mg …

Efecto De La Suplementación Con Alimento Vivo En El Desempeño Productivo Del Pez Disco Symphysodon Aequefaciatus, Andrés Ruiz Rodríguez, Alejandra Del Pilar Troncoso Arjona

Zootecnia

En los sistemas de producción acuícola, la alimentación es uno de los principales factores que influye en la productividad del sistema, interviniendo en aspectos tales como el adecuado crecimiento de los peces, su porcentaje de supervivencia, pigmentación y por ende su valor final; siendo la alimentación uno de los factores más críticos para el desarrollo del pez disco en su estado de alevín, razón por la cual es necesario suplementarlo con alimento vivo. Con el objetivo de determinar el efecto de la suplementación con alimento vivo, gorgojo del maní (Ulumoides dermestoides) en el desempeño productivo del pez disco (Symphysodon aequefaciatus), …

The Effects Of Chanellization And Channel Restoration On Aquatic Habitat And Biota Of The Pecos River, New Mexico, Darrel J. Mecham

Electronic Theses and Dissertations

River channelization has been shown to negatively impact riverine ecosystems by degrading aquatic habitat conditions, decreasing diversity of both fish and aquatic invertebrate assemblages and impairing fish recruitment. As knowledge of the negative impacts of channelization has increased, so have channel restoration efforts. We evaluated a recent channel restoration project on the Pecos River, New Mexico by comparing abiotic and biotic conditions among five reaches of river, including the restored reach, an unchannelized reach and a channelized reach all prone to streamflow intermittence and an unchannelized reach and channelized reach more perennial in nature. Our first objective was to assess …

Passage Route Survival And Behavior Of Juvenile Salmon At Priest Rapids Dam, Columbia River, Wa, Kyle B. Hatch

All Master's Theses

Columbia River hydropower is an economic mainstay of the Pacific Northwest. However, it is well known that the construction of hydropower dams has added anthropogenic pressure to Columbia River salmon populations. Juvenile salmon that pass through powerhouse turbines at large hydropower dams display higher mortality rates than salmon passing through alternative routes; thus at Priest Rapids Dam, a top-spill fish bypass was constructed as a safer alternate downstream passage. To investigate the efficacy of this new passage structure, an acoustic telemetry study was conducted in the spring of 2014 to determine the ability of the bypass to collect and safely …

Traceable And Transparent Fishing In The Indian Ocean Addressing Iuu, Ghazi Salahuddin

World Maritime University Dissertations

Traceability and transparency in fishing and the trade of fish products has been brought to the forefront of the international fisheries policy agenda and is recognized as a core issue. Governments have awakened to the fact that IUU (illegal, unreported and unregulated) fishing has global impacts on the social, economic and ecological aspects of fisheries and therefore requires regional collaboration to combat this global issue. Developing countries severely suffer from the effects of IUU, particularly within their exclusive economic zones (EEZ) due to lack of resources and infrastructure to properly manage waters under their jurisdiction and in remote areas where …