Engineering Commons^™

Quantitative Analysis Techniques For Assessing Organelle Organization And Dynamics In Individual Cells, Isaac Vargas

Graduate Theses and Dissertations

In biomedical optics and microscopy, the organization and morphology of organelles have been widely studied. In spite of novel imaging techniques, there is still a lack of quantitative tools to easily measure cellular characteristics from image data. Previous studies have explored multiple approaches to assess organelle organization and alignment, resulting in complicated and extensive algorithms that are both subject to multiple steps of image processing and influenced by non-cellular artifacts. In this thesis, a technique called the Modified Blanket Method (MBM) is introduced to quantify organelle organization through measurements of fractal dimension (FD) on a pixel-by-pixel basis. With the use …

A Rotating Aperture Mask For Small Telescopes, Edward L. Foley

Master's Theses

Observing the dynamic interaction between stars and their close stellar neighbors is key to establishing the stars’ orbits, masses, and other properties. Our ability to visually discriminate nearby stars is limited by the power of our telescopes, posing a challenge to astronomers at small observatories that contribute to binary star surveys. Masks placed at the telescope aperture promise to augment the resolving power of telescopes of all sizes, but many of these masks must be manually and repetitively reoriented about the optical axis to achieve their full benefits. This paper introduces a design concept for a mask rotation mechanism that …

Nonlinearities And Carrier Dynamics In Refractory Plasmonic Tin Thin Films, Heather George, Jennifer Reed, Manuel R. Ferdinandus, Clayton Devault, Alexei Lagutchev, Augustine Urbas, Theodore B. Norris, Vladimir M. Shalaev, Alexandra Boltasseva, Nathaniel Kinsey

Faculty Publications

Titanium nitride is widely used in plasmonic applications, due to its robustness and optical properties which resemble those of gold. Despite this interest, the nonlinear properties have only recently begun to be investigated. In this work, beam deflection and non-degenerate femtosecond pump-probe spectroscopy (800 nm pump and 650 nm probe) were used to measure the real and imaginary transient nonlinear response of 30-nm-thick TiN films on sapphire and fused silica in the metallic region governed by Fermi-smearing nonlinearities. In contrast to other metals, it is found that TiN exhibits non-instantaneous positive refraction and reverse saturable absorption whose relaxation is dominated …

Tailored Frequency Comb Structures And Their Sensing Applications, James Hendrie

Optical Science and Engineering ETDs

The focus of this dissertation is the development and investigation of nested cavity mode-locked lasers and their resultant tailored frequency combs. A nested cavity is made up of two cavities, known as parents. One parent is a larger, active, 100MHz Ti:Saph oscillator and the other is a smaller, passive, 7GHz Fabry-Perot Etalon (FPE). Unlike standard frequency combs that are continuous, a tailored comb’s teeth are distributed in equally spaced groups where the center of each group corresponds to the resonance of the FPE and the side bands are determined by the resonances of the Ti:Saph. This unique coupling of the …

Design, Construction And Application Of A Home-Built, Two-Photon Microscope, William P. Breeding

Electronic Theses and Dissertations

Two-photon microscopy (TPM) is a powerful, versatile imaging modality for the study of biological systems. This thesis overviews the relevant physics involved in TPM, design considerations and process of constructing a home-built, two-photon microscope, and provides a set of procedures to operate the system. Furthermore, this work explores several applications of TPM through the study of single-cell metabolism and imaging the cellular-material interface. Explored in particular depth was the imaging of cellulose nanofiber (CNF) materials, with the goal of understanding the three-dimensional nature of fibroblast cell growth when embedded within the materials. This work uncovered several optical properties of CNF, …

Generation And Use Of Femtosecond, Gigawatt, Near Infrared Laser Pulses From An Amplified, Mode-Locked, Ti:Sapphire Laser, David Anthony Valdés

Optical Science and Engineering ETDs

This work modeled the early to middle successes achieved in the field of ultrafast, high peak power optics, beginning with the work of Nobel Prize winners Donna Strickland and Gérard Mourou in 1985. In our work, 100 fs light pulses of around 800 nm were generated by a Ti:Sapphire oscillator, then amplified to approximately 30 GW peak power using a chirped pulse amplification system that included regenerative and multi-pass amplifiers. As a verification of our pulses having high peak powers and ultrashort durations, they were then used to strike water, glass, and a Kerr Cell. Supercontinuum generation was observed as …

Construction Of A Hyperspectral Camera Using Off-The-Shelf Parts And 3d-Printed Parts, Connor Heo

Mechanical Engineering Undergraduate Honors Theses

The Arkansas Center for Space and Planetary Sciences (ACSPS) is working together with the Mechanical Engineering Department to build a modifiable camera with 3D-printed parts and off-the-shelf parts (sourced from Edmund Optics and Amazon). The design is to be readily changeable, primarily with the 3D printed parts, as to accommodate new ideas and functionalities in the future. Ultimately, the camera should be relatively cheap while maintaining functionality for proposed use cases. Earlier versions of the design will be tested extensively and rapidly updated in the ACSPS labs with benchtop testing. This will involve subjects with both visible and infrared emissions, …

Enhancing The Resolution Of Imaging Systems By Spatial Spectrum Manipulation, Wyatt Adams

Dissertations, Master's Theses and Master's Reports

Much research effort has been spent in the 21st century on superresolution imaging techniques, methods which can beat the diffraction limit. Subwavelength composite structures called ``metamaterials" had initially shown great promise in superresolution imaging applications in the early 2000s, owing to their potential for nearly arbitrary capabilities in controlling light. However, for optical frequencies they are often plagued by absorption and scattering losses which can decay or destroy their interesting properties. Similar issues limit the application of other superresolution devices operating as effective media, or metal films that can transfer waves with large momentum by supporting surface plasmon polaritons. In …

Optical Vortex And Poincaré Analysis For Biophysical Dynamics, Anindya Majumdar

Dissertations, Master's Theses and Master's Reports

Coherent light - such as that from a laser - on interaction with biological tissues, undergoes scattering. This scattered light undergoes interference and the resultant field has randomly added phases and amplitudes. This random interference pattern is known as speckles, and has been the subject of multiple applications, including imaging techniques. These speckle fields inherently contain optical vortices, or phase singularities. These are locations where the intensity (or amplitude) of the interference pattern is zero, and the phase is undefined.

In the research presented in this dissertation, dynamic speckle patterns were obtained through computer simulations as well as laboratory setups …

Monitoring Cerebral Functional Response Using Scmos-Based High Density Near Infrared Spectroscopic Imaging, Dharminder Singh Langri

Browse all Theses and Dissertations

Neurovascular coupling is an important concept that indicates the direct link between neuronal electrical firing with the vascular hemodynamic changes. Functional Near Infrared Spectroscopy (fNIRS) can measure changes in cerebral vascular parameters of oxy-hemoglobin and deoxyhemoglobin concentrations and thus can provide neuronal activity through neurovascular coupling. Currently many commercial fNIRS devices are available, but they are limited by the number of channels (usually having only 8 detectors), which can limit the sensitivity, contrast, and resolution of imaging. High-density imaging can improve sensitivity, contrast, and resolution by providing many measurements and averaging the signals originating from the target cerebral focus area …