Engineering Commons^™

Language Models For Rare Disease Information Extraction: Empirical Insights And Model Comparisons, Shashank Gupta

Theses and Dissertations--Computer Science

End-to-end relation extraction (E2ERE) is a crucial task in natural language processing (NLP) that involves identifying and classifying semantic relationships between entities in text. This thesis compares three paradigms for end-to-end relation extraction (E2ERE) in biomedicine, focusing on rare diseases with discontinuous and nested entities. We evaluate Named Entity Recognition (NER) to Relation Extraction (RE) pipelines, sequence-to-sequence models, and generative pre-trained transformer (GPT) models using the RareDis information extraction dataset. Our findings indicate that pipeline models are the most effective, followed closely by sequence-to-sequence models. GPT models, despite having eight times as many parameters, perform worse than sequence-to-sequence models and …

A Secure And Distributed Architecture For Vehicular Cloud And Protocols For Privacy-Preserving Message Dissemination In Vehicular Ad Hoc Networks, Hassan Mistareehi

Theses and Dissertations--Computer Science

Given the enormous interest in self-driving cars, Vehicular Ad hoc NETworks (VANETs) are likely to be widely deployed in the near future. Cloud computing is also gaining widespread deployment. Marriage between cloud computing and VANETs would help solve many of the needs of drivers, law enforcement agencies, traffic management, etc. The contributions of this dissertation are summarized as follows: A Secure and Distributed Architecture for Vehicular Cloud: Ensuring security and privacy is an important issue in the vehicular cloud; if information exchanged between entities is modified by a malicious vehicle, serious consequences such as traffic congestion and accidents can …

Peer-To-Peer Energy Trading In Smart Residential Environment With User Behavioral Modeling, Ashutosh Timilsina

Theses and Dissertations--Computer Science

Electric power systems are transforming from a centralized unidirectional market to a decentralized open market. With this shift, the end-users have the possibility to actively participate in local energy exchanges, with or without the involvement of the main grid. Rapidly reducing prices for Renewable Energy Technologies (RETs), supported by their ease of installation and operation, with the facilitation of Electric Vehicles (EV) and Smart Grid (SG) technologies to make bidirectional flow of energy possible, has contributed to this changing landscape in the distribution side of the traditional power grid.

Trading energy among users in a decentralized fashion has been referred …

Estimating Free-Flow Speed With Lidar And Overhead Imagery, Armin Hadzic

Theses and Dissertations--Computer Science

Understanding free-flow speed is fundamental to transportation engineering in order to improve traffic flow, control, and planning. The free-flow speed of a road segment is the average speed of automobiles unaffected by traffic congestion or delay. Collecting speed data across a state is both expensive and time consuming. Some approaches have been presented to estimate speed using geometric road features for certain types of roads in limited environments. However, estimating speed at state scale for varying landscapes, environments, and road qualities has been relegated to manual engineering and expensive sensor networks. This thesis proposes an automated approach for estimating free-flow …

Image-Based Roadway Assessment Using Convolutional Neural Networks, Weilian Song

Theses and Dissertations--Computer Science

Road crashes are one of the main causes of death in the United States. To reduce the number of accidents, roadway assessment programs take a proactive approach, collecting data and identifying high-risk roads before crashes occur. However, the cost of data acquisition and manual annotation has restricted the effect of these programs. In this thesis, we propose methods to automate the task of roadway safety assessment using deep learning. Specifically, we trained convolutional neural networks on publicly available roadway images to predict safety-related metrics: the star rating score and free-flow speed. Inference speeds for our methods are mere milliseconds, enabling …

Relation Prediction Over Biomedical Knowledge Bases For Drug Repositioning, Mehmet Bakal

Theses and Dissertations--Computer Science

Identifying new potential treatment options for medical conditions that cause human disease burden is a central task of biomedical research. Since all candidate drugs cannot be tested with animal and clinical trials, in vitro approaches are first attempted to identify promising candidates. Likewise, identifying other essential relations (e.g., causation, prevention) between biomedical entities is also critical to understand biomedical processes. Hence, it is crucial to develop automated relation prediction systems that can yield plausible biomedical relations to expedite the discovery process. In this dissertation, we demonstrate three approaches to predict treatment relations between biomedical entities for the drug repositioning task …

Automated Tree-Level Forest Quantification Using Airborne Lidar, Hamid Hamraz

Theses and Dissertations--Computer Science

Traditional forest management relies on a small field sample and interpretation of aerial photography that not only are costly to execute but also yield inaccurate estimates of the entire forest in question. Airborne light detection and ranging (LiDAR) is a remote sensing technology that records point clouds representing the 3D structure of a forest canopy and the terrain underneath. We present a method for segmenting individual trees from the LiDAR point clouds without making prior assumptions about tree crown shapes and sizes. We then present a method that vertically stratifies the point cloud to an overstory and multiple understory tree …

Automatic Detection Of Abnormal Behavior In Computing Systems, James Frank Roberts

Theses and Dissertations--Computer Science

I present RAACD, a software suite that detects misbehaving computers in large computing systems and presents information about those machines to the system administrator. I build this system using preexisting anomaly detection techniques. I evaluate my methods using simple synthesized data, real data containing coerced abnormal behavior, and real data containing naturally occurring abnormal behavior. I find that the system adequately detects abnormal behavior and significantly reduces the amount of uninteresting computer health data presented to a system administrator.

Multihierarchical Documents And Fine-Grained Access Control, Neil Moore

Theses and Dissertations--Computer Science

This work presents new models and algorithms for creating, modifying, and controlling access to complex text. The digitization of texts opens new opportunities for preservation, access, and analysis, but at the same time raises questions regarding how to represent and collaboratively edit such texts. Two issues of particular interest are modelling the relationships of markup (annotations) in complex texts, and controlling the creation and modification of those texts. This work addresses and connects these issues, with emphasis on data modelling, algorithms, and computational complexity; and contributes new results in these areas of research.

Although hierarchical models of text and markup …