Engineering Commons^™

Ethical Decision-Making In Older Drivers During Critical Driving Situations: An Online Experiment, Amandeep Singh, Sarah Yahoodik, Yovela Murzello, Samuel Petkac, Yusuke Yamani, Siby Samuel

Psychology Faculty Publications

The present study examined the impact of aging on ethical decision-making in simulated critical driving scenarios. 204 participants from North America, grouped into two age groups (18–30 years and 65 years and above), were asked to decide whether their simulated automated vehicle should stay in or change from the current lane in scenarios mimicking the Trolley Problem. Each participant viewed a video clip rendered by the driving simulator at Old Dominion University and pressed the space-bar if they decided to intervene in the control of the simulated automated vehicle in an online experiment. Bayesian hierarchical models were used to analyze …

Overcoming Uncertainties In Molecular Visualization, Thomas Wischgoll

Computer Science and Engineering Faculty Publications

Uncertainties are difficult if not impossible to avoid. Capturing data from the analog world almost always results in some form of uncertainty. The amount of uncertainty depends on the method of measurement and its accuracy. When visualizing data that has some associated uncertainty, it is essential to properly process and convey such uncertainty and especially the amount of uncertainty keeping in mind that additional processing steps can amplify the uncertainty. There are various sources of uncertainty, such as numerical limitations or limitations of the capture device. However, there are other sources of uncertainty. Some of these uncertainties stem from model …

Class Activation Mapping And Uncertainty Estimation In Multi-Organ Segmentation, Md. Shibly Sadique, Walia Farzana, Ahmed Temtam, Khan Iftekharuddin, Khan Iftekharuddin (Ed.), Weijie Chen (Ed.)

Electrical & Computer Engineering Faculty Publications

Deep learning (DL)-based medical imaging and image segmentation algorithms achieve impressive performance on many benchmarks. Yet the efficacy of deep learning methods for future clinical applications may become questionable due to the lack of ability to reason with uncertainty and interpret probable areas of failures in prediction decisions. Therefore, it is desired that such a deep learning model for segmentation classification is able to reliably predict its confidence measure and map back to the original imaging cases to interpret the prediction decisions. In this work, uncertainty estimation for multiorgan segmentation task is evaluated to interpret the predictive modeling in DL …

Fault Analysis And Debugging Of Microservice Systems: Industrial Survey, Benchmark System, And Empirical Study, Xiang Zhou, Xin Peng, Tao Xie, Jun Sun, Chao Ji, Wenhai Li, Dan Ding

Research Collection School Of Computing and Information Systems

The complexity and dynamism of microservice systems pose unique challenges to a variety of software engineering tasks such as fault analysis and debugging. In spite of the prevalence and importance of microservices in industry, there is limited research on the fault analysis and debugging of microservice systems. To fill this gap, we conduct an industrial survey to learn typical faults of microservice systems, current practice of debugging, and the challenges faced by developers in practice. We then develop a medium-size benchmark microservice system (being the largest and most complex open source microservice system within our knowledge) and replicate 22 industrial …

Exploring Eye Tracking Data On Source Code Via Dual Space Analysis, Li Zhang

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Eye tracking is a frequently used technique to collect data capturing users' strategies and behaviors in processing information. Understanding how programmers navigate through a large number of classes and methods to find bugs is important to educators and practitioners in software engineering. However, the eye tracking data collected on realistic codebases is massive compared to traditional eye tracking data on one static page. The same content may appear in different areas on the screen with users scrolling in an Integrated Development Environment (IDE). Hierarchically structured content and fluid method position compose the two major challenges for visualization. We present a …

Deploying, Improving And Evaluating Edge Bundling Methods For Visualizing Large Graphs, Jieting Wu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

A tremendous increase in the scale of graphs has been witnessed in a wide range of fields, which demands efficient and effective visualization techniques to assist users in better understandings of large graphs. Conventional node-link diagrams are often used to visualize graphs, whereas excessive edge crossings can easily incur severe visual clutter in the node-link diagram of a large graph. Edge bundling can effectively remedy visual clutter and reveal high-level graph structures. Although significant efforts have been devoted to developing edge bundling, three challenging problems remain. First, edge bundling techniques are often computationally expensive and are not easy to deploy …

Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi

Biology Faculty Works

GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …

Hpc Enabled Data Analytics For High-Throughput High-Content Cellular Analysis, Ross A. Smith, Rhonda J. Vickery, Jack Harris, Sara Gharabaghi, Thomas Wischgoll, David Short, Robert Trevino, Steven A. Kawamoto, Thomas J. Lamkin, Kevin Schoen, Eric E. Bardes, Scott C. Tabar, Bruce J. Aronow

Computer Science and Engineering Faculty Publications

Biologists doing high-throughput high-content cellular analysis are generally not computer scientists or high performance computing (HPC) experts, and they want their workflow to support their science without having to be. We describe a new HPC enabled data analytics workflow with a web interface, HPC pipeline for analysis, and both traditional and new analytics tools to help them transition from a single workstation mode of operation to power HPC users. This allows the processing of multiple plates over a short period of time to ensure timely query and analysis to match potential countermeasures to individual responses.

Java Based Visualization And Animation For Teaching The Dijkstra Shortest Path Algorithm In Transportation Networks, Ivan Makohon, Duc T. Nguyen, Masha Sosonkina, Yuzhong Shen, Manwo Ng

Civil & Environmental Engineering Faculty Publications

Shortest path (SP) algorithms, such as the popular Dijkstra algorithm has been considered as the "basic building blocks" for many advanced transportation network models. Dijkstra algorithm will find the shortest time (ST) and the corresponding SP to travel from a source node to a destination node. Applications of SP algorithms include real-time GPS and the Frank-Wolfe network equilibrium.

For transportation engineering students, the Dijkstra algorithm is not easily understood. This paper discusses the design and development of a software that will help the students to fully understand the key components involved in the Dijkstra SP algorithm. The software presents an …

Retail Precinct Management: A Case Of Commercial Decentralization In Singapore, Robert De Souza, Hoong Chuin Lau, Mark Goh, Lindawati, Wee-Siong Ng, Puay-Siew Tan

Research Collection School Of Computing and Information Systems

The synchronized last mile logistics concept seeks to address, through coordinated collaboration, several challenges that hinder reliability, cost efficiency, effective resource planning, scheduling and utilization; and increasingly, sustainability objectives. Subsequently, the meeting of service level and contractual commitments are competitively impacted with any loss of efficiency. These challenges, against a backdrop of Singapore, can essentially be addressed in selected industry sectors through a better understanding of logistics structures; innovative supply chain designs and coordination of services, operations and processes coupled with concerted policies and supply chain strategies.

Visual Analytics For Large Communication Trace Data, Jieting Wu

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Executions of modern parallel programs often yield complex communications among compute nodes of large-scale clusters of workstations or supercomputers. Analyzing communication patterns is becoming increasingly critical to performance optimiza- tion. As the scale and complexity of parallel applications drastically increases, visu- alization has become a feasible means to conduct analysis of massive communication patterns. However, most visualization tools fall short in showing comprehensive dy- namic communication graph and addressing the scalability issue. Our solution for analyzing dynamic communication patterns is based on an analytics framework cou- pled with a new visualization technique, named CommGram [29], that provides a flexible solution …

Placing Videos On A Semantic Hierarchy For Search Result Navigation, Song Tan, Yu-Gang Jiang, Chong-Wah Ngo

Research Collection School Of Computing and Information Systems

Organizing video search results in a list view is widely adopted by current commercial search engines, which cannot support efficient browsing for complex search topics that have multiple semantic facets. In this article, we propose to organize video search results in a highly structured way. Specifically, videos are placed on a semantic hierarchy that accurately organizes various facets of a given search topic. To pick the most suitable videos for each node of the hierarchy, we define and utilize three important criteria: relevance, uniqueness, and diversity. Extensive evaluations on a large YouTube video dataset demonstrate the effectiveness of our approach.

Riskvis: Supply Chain Visualization With Risk Management And Real-Time Monitoring, Rick S. M. Goh, Zhaoxia Wang, Xiaofeng Yin, Xiuju Fu, Loganathan Ponnanbalam, Sifei Lu, Xiaorong Li

Research Collection School Of Computing and Information Systems

With increased complexity, supply chain networks (SCNs) of modern era face higher risks and lower efficiency due to limited visibility. Hence, there is an immediate need to provide end-to-end supply chain visibility for efficient management of complex supply chains. This paper proposes a visualization scheme based on multi-hierarchical modular design and develops a supply chain visualization platform with risk management and real-time monitoring, named RiskVis, for realizing better Supply Chain Risk Management (SCRM). A Supply Chain Visualizer (SCV) with a graphical visualization platform is mounted as a part of a SCRM management decision-making dashboard and it provides senior management a …

Procedural Wound Geometry And Blood Flow Generation For Medical Training Simulators, Rifat Aras, Yuzhong Shen, Jiang Li, David R. Holmes Iii (Ed.), Kenneth H. Wong (Ed.)

Electrical & Computer Engineering Faculty Publications

Efficient application of wound treatment procedures is vital in both emergency room and battle zone scenes. In order to train first responders for such situations, physical casualty simulation kits, which are composed of tens of individual items, are commonly used. Similar to any other training scenarios, computer simulations can be effective means for wound treatment training purposes. For immersive and high fidelity virtual reality applications, realistic 3D models are key components. However, creation of such models is a labor intensive process. In this paper, we propose a procedural wound geometry generation technique that parameterizes key simulation inputs to establish the …

Mathematical Model Development Of Super-Resolution Image Wiener Restoration, Amr H. Yousef, Jiang Li, Mohammad A. Karim

Electrical & Computer Engineering Faculty Publications

In super-resolution (SR), a set of degraded low-resolution (LR) images are used to reconstruct a higher-resolution image that suffers from acquisition degradations. One way to boost SR images visual quality is to use restoration filters to remove reconstructed images artifacts. We propose an efficient method to optimally allocate the LR pixels on the high-resolution grid and introduce a mathematical derivation of a stochastic Wiener filter. It relies on the continuous-discrete-continuous model and is constrained by the periodic and nonperiodic interrelationships between the different frequency components of the proposed SR system. We analyze an end-to-end model and formulate the Wiener filter …

Fast Stochastic Wiener Filter For Super-Resolution Image Restoration With Information Theoretic Visual Quality Assessment, Amr Hussein Yousef, Jiang Li, Mohammad Karim, Mark Allen Neifeld (Ed.), Amit Ashok (Ed.)

Electrical & Computer Engineering Faculty Publications

Super-resolution (SR) refers to reconstructing a single high resolution (HR) image from a set of subsampled, blurred and noisy low resolution (LR) images. The reconstructed image suffers from degradations such as blur, aliasing, photo-detector noise and registration and fusion error. Wiener filter can be used to remove artifacts and enhance the visual quality of the reconstructed images. In this paper, we introduce a new fast stochastic Wiener filter for SR reconstruction and restoration that can be implemented efficiently in the frequency domain. Our derivation depends on the continuous-discrete-continuous (CDC) model that represents most of the degradations encountered during the image-gathering …

Tracking Web Video Topics: Discovery, Visualization, And Monitoring, Juan Cao, Chong-Wah Ngo, Yong-Dong Zhang, Jin-Tao Li

Research Collection School Of Computing and Information Systems

Despite the massive growth of web-shared videos in Internet, efficient organization and monitoring of videos remains a practical challenge. While nowadays broadcasting channels are keen to monitor online events, identifying topics of interest from huge volume of user uploaded videos and giving recommendation to emerging topics are by no means easy. Specifically, such process involves discovering of new topic, visualization of the topic content, and incremental monitoring of topic evolution. This paper studies the problem from three aspects. First, given a large set of videos collected over months, an efficient algorithm based on salient trajectory extraction on a topic evolution …

Tuning Tabu Search Strategies Via Visual Diagnosis, Steven Halim, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

While designing working metaheuristics can be straightforward, tuning them to solve the underlying combinatorial optimization problem well can be tricky. Several tuning methods have been proposed but they do not address the new aspect of our proposed classification of the metaheuristic tuning problem: tuning search strategies. We propose a tuning methodology based on Visual Diagnosis and a generic tool called Visualizer for Metaheuristics Development Framework(V-MDF) to address specifically the problem of tuning search (particularly Tabu Search) strategies. Under V-MDF, we propose the use of a Distance Radar visualizer where the human and computer can collaborate to diagnose the occurrence of …