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Turkish Journal of Biology

No abstract provided.

Topographical Mobility Envelope Modeling And Geometric Analysis For Off-Road Unmanned Ground Vehicles, Huashuai Fan

ETDs from 2020-2029

This dissertation introduces topographical mobility as a quantitative framework for assessing off-road unmanned ground vehicle performance based on geometric interaction between the vehicle and terrain. Rather than relying on conventional discrete indices, the proposed formulation evaluates mobility directly from vehicle and terrain geometry, expressing vehicle capability in terms of radius constraints implied by its dimensions and suspension state. On the vehicle side, longitudinal and lateral mobility radii are derived analytically from vehicle geometry—wheelbase, track width, ground clearance, and lowest underbody point location—quantifying the minimum terrain radius negotiable without underbody interference. Suspension state is shown to alter longitudinal mobility radius by …

Evaluation Of Occupational Exposure To Noise And Respirable Particulate Matter In Dentistry, Kabe Fetner

ETDs from 2020-2029

Dental procedures can result in occupational exposures to both noise and particulate matter. Dental professionals routinely operate high-speed instruments and mechanical tools that may produce elevated sound levels and aerosolized particles during clinical treatment. Although these exposures are common in dental environments, limited data exist describing full-shift occupational exposure levels during routine dental procedures. The purpose of this study was to evaluate occupational exposure to noise and respirable particulate matter (RPM) during routine dental procedures in a clinical setting. Area noise monitoring and real-time aerosol monitoring were conducted over six clinical days while common dental procedures were performed, including fillings, …

The Role Of Interorganizational Linkages In Shaping Hospital Reporting Burden: A Relational View Analysis, Robert Howard

ETDs from 2020-2029

Administrative burden associated with health information exchange represents a persistent challenge for U.S. hospitals, contributing to provider burnout and operational inefficiency. This study examined whether interorganizational linkages, specifically hospital system affiliation, participation in Accountable Care Organizations (ACOs), and participation in Health Information Exchanges (HIEs), are associated with perceived barriers to electronic health information exchange. Guided by the Relational View, linkages were conceptualized as potential conduits for shared assets, knowledge-sharing routines, and complementary capabilities that might reduce barriers to exchange. Data from 2018–2023 were drawn from the American Hospital Association Annual Survey and IT Supplement, merged with community-level measures from the …

Flexible Load Communication Protocol Mapping Guide: Ieee 2030.5 To Ansi/Cta-2045, Joseph D'Ambrosia

Dissertations and Theses

As more variable renewable energy resources are connected to the grid, new challenges emerge for grid operators. Demand response programs can provide an additional degree of freedom to grid operators, by modulating the patterns of electricity consumption of residential, customer-owned, flexible loads. The success of demand response programs requires robust and reliable systems of communication between grid operators and flexible loads.

The ANSI/CTA-2045 communication protocol enables customer-owned devices to act as flexible loads. The SEP 2.0/IEEE 2030.5 communication protocol is used to manage distributed energy resources, including flexible loads. Interoperability can be realized by mapping ANSI/CTA-2045 and SEP 2.0/IEEE 2030.5 …

Beyond Predation: Invasive Green Crab (Carcinus Maenas) Alters Juvenile Pacific Oyster (Magallana Gigas) Function And Survival Across Environmental Gradients, Isabel Helena Mize

Dissertations and Theses

The establishment of the invasive green crab, Carcinus maenas, creates ecological and economic impacts in estuaries, particularly through predation on bivalves and alteration of species interactions. This thesis evaluates the direct predation, non-consumptive predator presence, and spatial management implications of C. maenas impacts on filtration rate of juvenile Pacific oysters, Magallana gigas, across laboratory, field, and GIS-based vulnerability mapping approaches. In laboratory conditions, clearance rates of M. gigas were measured over 72 hours across two temperatures (14°C and 18°C) and predator treatments including C. maenas, Pacific rock crab (Romaleon antennarium), both predators together, and a …

Retinoic Acid-Loaded Nanoparticles Enhance Macrophage-Mediated Control Of Leishmania Infantum, Zeynep İşlek, Merve Gündoğdu, Zeynep Di̇la Yüksel

Turkish Journal of Biology

Background/aim: Visceral leishmaniasis, primarily caused by Leishmania infantum, remains a major global health challenge due to limitations in current chemotherapeutic options, including toxicity and emerging drug resistance. Host-directed therapeutic approaches are increasingly recognized as promising alternatives. All-trans retinoic acid (ATRA) is an immunomodulatory molecule with host-dependent effects on macrophage function; however, its therapeutic use is hindered by instability and poor solubility. Solid lipid nanoparticles (SLNs) offer a controlled and biocompatible delivery platform capable of enhancing intracellular drug accumulation.

Materials and methods: ATRA-loaded SLNs were prepared and characterized for size, polydispersity index, zeta potential, and morphology. Their antileishmanial activity was evaluated …

Characterization Of Poly-Β-Hydroxybutyrate And Its Biosynthesis In Priestia Endophytica Ucm B-5715, Alina Kharchuk, Maksym Kharchuk, Maksym Kharkhota, Sergiy Rogalsky, Oksana Tarasyuk, Oleksandr Kisten, Anastasiia Hubina, Illya Kapats, Liliia Avdieieva

Turkish Journal of Biology

Background/aim: Polyhydroxyalkanoates (PHAs) are biodegradable biopolymers with promising applications in biotechnology and medicine; however, the diversity of their biosynthesis within the genus Priestia remains poorly characterized. Although Priestia species have been recognized as potential PHA producers, the detailed genomic architecture and physicochemical properties of the polymers synthesized by these bacteria, particularly in the type strain, remain poorly understood. This study aimed to characterize the poly-β-hydroxybutyrate (PHB) produced by Priestia endophytica UCM B-5715 and to investigate the PHB biosynthetic genes across related strains.

Materials and methods: PHB granules were visualized and measured using fluorescence microscopy, transmission electron microscopy, and scanning electron …

Nutrient Uptake Of Two Microalgae From Culture Medium Under Nickel Treatment, Di̇lara Erdaği, Büşranur Şeker, Celal Caner, Gi̇zem Çeti̇n, Hüseyi̇n Altundağ, Hati̇ce Tunca

Turkish Journal of Biology

Background/aim: Phycoremediation is essential for purifying wastewater of heavy metals to ensure a sustainable environment, as these components can be detrimental to organisms upon entering the food chain. Among heavy metals, nickel is vital at low concentrations due to its presence in the active sites of many metalloenzymes in algae. However, at high concentrations, it disrupts the functioning of many metabolic reactions. This study examines the effects of nickel treatment on the uptake of macro- and micronutrients in medium by algae via ion exchange pathways or in competition with other metals. The study aims to determine the effects of nickel …

Deep Seabed Mining And The Law Of The Sea: Strategic Competition, Institutional Failure, And The Third Age, Michael W. Lodge

International Law Studies

Edited and annotated speech by Michael Lodge, former Secretary-General of the International Seabed Authority (2017–2024), delivered at the U.S. Naval War College, Newport, Rhode Island, on March 11, 2026.

From Cork To Coasting: A Multi-Stage Ode Model Of Water-Rocket Flight, Viktoria Savatorova, Patryk Kustra, Ethan Dyer, Connor Carlson, Aleksei Talonov

CODEE Journal

Water rockets provide an affordable and engaging context for exploring applications of differential equations. Motivated by outreach activities conducted with undergraduate students, we develop a four-stage mathematical model of vertical water-rocket flight that is suitable for use in an ODE or mathematical modeling course. The model includes the cork-release phase, water-thrust propulsion, air-thrust propulsion with compressible and potentially choked flow, and the final ballistic stage with quadratic drag. While retaining key physical features, the model can be formulated as a system of ordinary differential equations that can be integrated numerically using tools familiar to students. We compare model predictions with …

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Turkish Journal of Agriculture and Forestry

No abstract provided.

Plant Extract-Enriched Mineral Beverages: Effects Of Temperature And Ultrasound Processing On Bioactive Content, Eli̇f Feyza Topdaş, İsa Arslan Karakütük, Memnune Şengül

Turkish Journal of Agriculture and Forestry

Functional beverages derived from herbal extracts have potential health benefits. There is a growing interest in these beverages because they are a sustainable and health-promoting alternative to conventional flavored drinks. This study aimed to produce phenolic rich mineralized herbal beverages using lyophilized purple basil, lavender, and thyme extracts at two different concentrations (2% and 4%). Changes in the physicochemical properties (pH, electrical conductivity, color, and viscosity), total phenolic content (TPC), total flavonoid content (TFC), total antioxidant capacity (2,2-diphenyl-1-picrylhydrazyl (DPPH) and 2,2’-Azino-bis(3-ethylbenzothiazoline 6-sulfonic acid (ABTS) radical scavenging assays), and individual phenolic compounds were determined for beverages stored at 4, 25, and …

Ecological Risk Assessment Of Heavy Metal-Microplastic Interactions In Agricultural Soils Irrigated With Secondary Treated Wastewater, Senar Aydin, Osman Mücevher, Arzu Ulvi̇, Fatma Bedük, Özen Merken, Ci̇han Uzun, Mehmet Emi̇n Aydin

Turkish Journal of Agriculture and Forestry

The increased reuse of treated wastewater (TWW) for irrigation in arid and semiarid regions raises environmental concerns regarding microplastics (MPs), specifically their capacity to adsorb and transport heavy metals. This study assesses the quantity of MPs and associated metals (Cd, Cr, Cu, Pb, Ni, and Co) in agricultural soils irrigated with TWW in the Konya region of Türkiye. To this end, a total of 202 soil samples were collected from TWW-irrigated (180) and nonirrigated control fields (22) at two depths (0–10 and 10–20 cm). MPs were extracted from the samples using a density separation technique, identified microscopically, and analyzed for …

Influence Of Crop Diversification On Climate Change Mitigation And Business Profitability: A Study Of The Southern Marmara Region, Türkiye, Engi̇n Tolga Önder, Nuray Demi̇r

Turkish Journal of Agriculture and Forestry

Crop diversification strategies are being put forward to mitigate the negative effects of climate change associated with greenhouse gas emissions, and thus to ensure sustainable food production that is resilient to climate change and to reduce the risks faced by producers. By diversifying their agricultural products producers can insure themselves against the risks associated with climate variations, disease, and pests, contributing to both continuous food production and income flow. The present study investigates the effect of climate change on enterprise income in the Yenişehir district of Bursa province – a region noted for its intensive production of vegetables and other …

Derived Smoke Solution Mitigates Drought Stress In Forage Pea By Enhancing Antioxidant Defense Mechanisms, Medi̇ne Çopur Doğrusöz

Turkish Journal of Agriculture and Forestry

This study was conducted to enhance plant resilience against drought stress, a major threat to agricultural production, by utilizing an eco-friendly application derived from agricultural waste. We investigated the protective effect of a smoke solution, derived from poppy harvest residues, on the biometric and biochemical parameters of two forage pea (Pisum sativum spp. arvense L.) varieties (GAP Pembesi and Özkaynak). Seeds were primed with 1% and 10% smoke solutions and grown under three distinct conditions: normal irrigation (control), moderate drought, and severe drought. Parameters including biometric traits, chlorophyll pigments, secondary metabolites, and antioxidant enzyme activities were analyzed. The smoke solution …

Low Cost Lightning Localization At Microwave Frequencies, Bradley Glaubitz

Dissertations and Theses

High precision lightning localization is essential for atmospheric research and public safety, yet the high cost of traditional VLF/LF systems restricts high resolution detection primarily to well funded agencies. Furthermore, conventional low frequency receivers often overlook microwave frequency emissions associated with lightning leader development. This thesis proposes a compact, low cost microwave frequency localization system operating in the 1.42 GHz band to provide an accessible alternative for high resolution mapping. The methodology utilizes an ARM Cortex M0+ microcontroller and a triggered 64 MHz 32 bit counter synchronized to a GPS Pulse Per Second (PPS) signal, achieving a temporal resolution of …

Adhesion Depends On Interfacial Strength: Time And Temperature Effects, Shi-Qing Wang, Zehao Fan, Tianji Pang, Zhe Cui

University Research

In the conventional description, peeling of an adhesive from a solid substrate is expressed in terms of adhesion energies at adhesive-substrate interfaces. However, this energy-based perspective faced considerable difficulties in explaining why the adhesion energy, also known as peel strength Γp, is many orders of magnitude greater than Dupré’s thermodynamic work of adhesion, Γ0. In this study, we present experimental evidence to demonstrate that polymer adhesion is governed by interfacial strength σinterf, defined by the pair of adhesive and substrate. A tensile adhesion test is performed to estimate σinterf from adhesion strength σadh equal to the engineering stress at detachment. …

Exploring Organizational Responses To Clinician Turnover: A Baldrige Framework Approach, Sharayza Rachael Blakemore

Walden Dissertations and Doctoral Studies

No abstract provided.

Centralized Review Of Alzheimer's Disease And Related Dementias Biomedical Repositories And Computational Methods, Johaan Kathilankal, Kewei Chen, Chen Zhao, Lingtao Chen, Seyedamin Pouriyeh, Zongxing Xie, Yixin Xie

Faculty Articles

lzheimer’s disease and related dementias (ADRD) are neurodegenerative conditions characterized by progressive cognitive and functional decline. AD pathology is associated with extracellular amyloid-β plaques, intracellular tau neurofibrillary tangles, synaptic dysfunction, and neuronal loss. AD accounts for approximately 60–80% of dementia cases globally. In 2022, AD was the seventh leading cause of death in the United States, and the number of Americans aged 65 and older living with Alzheimer’s dementia is projected to increase substantially by 2060. Despite decades of research, AD/ADRD data resources remain fragmented across clinical, imaging, genetic, genomic, and therapeutic domains. This paper addresses that gap by providing …

Active Learning Of Constraint Boundaries Using Expected Magnitude Of Incorrectness And Neural Networks, Atticus Beachy, Ramana V. Grandhi

Faculty Publications

This research proposes an acquisition function for constraint boundary identification, with applications to hypersonic air vehicles. Hypersonic vehicles endure extreme thermal loads caused by aerodynamic heating, resulting in a strong coupling between structural performance and aerothermodynamics. However, modeling coupled system behaviors requires simultaneous consideration of both aerodynamic and structural design variables, increasing the dimensionality of the design trade space and the difficulty of accurately modeling the constraints. Several active learning schemes have been proposed to accelerate identification of the composite feasible region that satisfies all constraints. Some of these require integrating the surrogate model over the entire design space with …

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Turkish Journal of Chemistry

No abstract provided.

Production, Purification, And Crystallization Of The Recombinant Her2 Tyrosine Kinase Domain (Her2-Tkd), Edanur Topalan, Hali̇li̇brahi̇m Çi̇ftçi̇, Hasan Demi̇rci̇

Turkish Journal of Chemistry

The human epidermal growth factor receptor 2 tyrosine kinase domain (HER2-TKD) is an important therapeutic target in oncology. In this study, we developed a practical and cost-effective approach for producing soluble recombinant HER2-TKD in Escherichia coli as a basis for structure-based drug discovery. The gene encoding HER2-TKD was cloned into a pET28a(+) expression vector and expressed in E. coli. Since the protein was initially obtained as inclusion bodies, solubilization with 1.5% sarcosyl was applied to recover it in soluble form. The purified protein was obtained through size-exclusion chromatography, followed by tag removal using reverse affinity purification. Crystallization trials were performed …

Quantum Engineered Mxene–Graphene–Plasmonic Nanocomposites For Next-Generation Transparent And Flexible Space Photovoltaics, Arash Vaghef-Koodehi

Turkish Journal of Chemistry

This study presents a quantum‑engineered, tricomponent heterostructure comprising Ti3C2T MXene quantum dots (2–5 nm), single‑layer graphene, and plasmonic gold nanoparticles (15 ± 3 nm) uniformly embedded within electrospun polyacrylonitrile nanofibers. This integrated architecture demonstrates a remarkable combination of optical transparency (89.3 ± 1.1%) and power conversion efficiency (19.7 ± 0.4%) under AM0 solar illumination, representing 340% enhancement over state‑of‑the‑art transparent photovoltaic devices. A multiscale computational framework, bridging density functional theory and device‑level drift-diffusion modeling, identifies optimal interlayer spacing (3.4 ± 0.1 Å) as the key to achieving 89.3% charge‑transfer efficiency. Concurrently, localized surface plasmon resonances at 532 nm generate electromagnetic …

Efficient Heterogeneous Photo-Fenton Degradation Of Azo Dyes Using The Nanocomposite Mgfe2o4/Mos2, Zahra Zeinali, Leila Ershadi Afshar, Naz Chaibakhsh, Farnaz Isapour

Turkish Journal of Chemistry

In the present work, a facile hydrothermal route was employed to synthesize the nanocomposite MgFe2O4/MoS2, which acted as a heterogeneous photo-Fenton catalyst for the degradation of a synthetic diazo dye, Acid Blue 113 (AB113). The nanocatalyst produced underwent analysis using multiple characterization techniques. The parameters influencing the oxidative reaction were statistically modeled and optimized using response surface methodology. Optimal degradation efficiency for AB113 (94.92%) was attained at pH 8.79 using 10 mg of MgFe2O4/MoS2 nanocatalyst, 1.6 mL of H2O2, and a reaction duration of 27 min. The synergistic effect resulting from the formation of electron-hole pairs renders the combined photocatalysis …

Electrochemical Biosensing Of Alpha-Fetoprotein Based On Carboxylated Multi-Walled Nanotube-Polyazur A (In Des)-Gold Nanoparticles, Merve Yilmaz Çilçar, Meli̇ke Bi̇lgi̇ Kamaç

Turkish Journal of Chemistry

AFP, a cancer biomarker, is monitored during fetal development and in the serum of pregnant women. Sensitive and rapid monitoring of AFP is crucial for effective management. In this study, screen-printed carbon electrodes (SPCEs) modified with multi-walled carbon nanotubes (MWCNT-COOH), polyAzur A (PAA), which was prepared in a deep eutectic solution (DES), and gold nanoparticles (AuNP) were fabricated. AFP biosensors were developed for practical, sensitive, low-cost, and rapid detection of AFP. Optimizations of nanostructures (MWCNT-COOH, AuNP) and polymers (PAADES) were performed. The MWCNT-COOH, PAADES, and AuNP-modified SPCEs were characterized by FE-SEM-EDX, FTIR, and XRD techniques. The amounts of 6-MOH, APTES, …

[H]-Mediated Enhancement Of The Fenton Reaction Over A Pd/Uio-66(Zr)-F4 Catalyst, Juanhong Li, Suqin Wang, Xin Liu, Feng Liu

Turkish Journal of Chemistry

A [H]-accelerated catalytic Fenton system was developed using Pd/UiO-66(Zr)-F4 as the catalyst. This system enabled the regeneration of Fe²⁺ and facilitated the continuous generation of both ·OH and 1O2 through [H]-mediated electron transfer at ambient temperature and pressure. Under the conditions of 0.2 g L−1 catalyst (Pd loading 0.516 wt%), 25 μM Fe2+, 60 mL min−1 H2 flow (as the [H] source), 20 mM H2O2, and pH 3, approximately 89% of carbamazepine (initial concentration 20 mg L−1) was degraded within 3 h using trace iron. However, the catalytic activity of Pd/UiO-66(Zr)-F4 gradually declined from 89% to 53% over six reaction …

Alcohol-Based Microextraction Of Rhodamine 6g From Soft Drink, Food, And Cosmetic Samples, Mustafa Soylak, Esra Yamaner, Özgür Özalp

Turkish Journal of Chemistry

By using alcohol-based solvent extraction without tetrahydrofuran, a liquid–liquid microextraction technique was developed for the separation–enrichment of trace levels of Rhodamine 6G from complex matrices, including soft drinks, food, cosmetics, hygiene products, and natural waters. Numerous experimental parameters were tuned, including pH, alcohol volume, ultrasonication time, and sample and eluent volume. The enrichment factor (EF), limit of detection (LOD), and limit of quantification (LOQ) were used to assess the analytical performance of the suggested approach. The LOD and LOQ were 6.92 ng mL−1 and 23 ng mL−1, respectively, and the EF was 14. Through the use of the standard addition …

Synthesis Of Two Hofmann-Type-Like Clathrates, Characterizations, And Investigation Of Their Structures, Spectroscopic And Theoretical Properties, Zari̇fe Si̇bel Şahi̇n, Zeki̇ Kartal

Turkish Journal of Chemistry

This study concerns two Hofmann-type-like clathrates using 4-aminopyridine (4AP) as ligands and the transition metal atoms copper (Cu) and zinc (Zn). These clathrates have the structural features of heteronuclear tetracyanonickelate(II) and contain H2O and 4AP molecules as guest molecules, respectively. These two clathrates were characterized by infrared spectroscopy (IR), elemental analysis, and single crystal X-ray diffraction (SC-XRD) techniques. Based on elemental and spectral data, the structural formulae describing these clathrates were found to be [Cu(II)(4AP)4Ni(μ-CN)2(CN)2]·H2O (1) and [Zn(II)(4AP)4Ni(μ-CN)2(CN)2]·(4AP) (2). In addition, the values of some optical, electronic, and thermochemical properties of the two obtained clathrates calculated with the Gaussian 03 …

Physically Mixed Graphene Aerogel:Carbon Black (Ga:Cb)-Supported Pt Or Hydrothermally Synthesized Ga-Pt/Cb Hybrid Electrocatalysts For Pem Fuel Cells, Emi̇ne Teke Öner, Meli̇s Irmak Aydin, Merve Ni̇da Dursunoğlu, Ayşe Bayrakçeken

Turkish Journal of Chemistry

Graphene aerogels (GAs), having the superior properties of graphene and aerogel structures, are promising support materials for Pt nanoparticles to be used as electrocatalysts for PEM fuel cells. In this study, two routes were followed to synthesize GA-based electrocatalysts. In the first route, after GA synthesis it was physically mixed with carbon black (CB) by changing the mass ratios from 0% to 100% with 25% increments and then decorated with Pt nanoparticles via microwave irradiation, resulting in Pt/GA:CB electrocatalysts. In the second route, firstly, Pt/CB electrocatalyst was synthesized and then GA was hydrothermally added to the Pt/CB by changing the …