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Class Notes Oct 2023

Class Notes

DePaul Magazine

DePaul alumni share news about their promotions, career moves, weddings, birth announcements, other accomplishments and more with the DePaul community.


The Influence Of Obesity On Outcomes With Immune Checkpoint Blockade: Clinical Evidence And Potential Biological Mechanisms, Andrew W Hahn, Neha Venkatesh, Pavlos Msaouel, Jennifer L Mcquade Oct 2023

The Influence Of Obesity On Outcomes With Immune Checkpoint Blockade: Clinical Evidence And Potential Biological Mechanisms, Andrew W Hahn, Neha Venkatesh, Pavlos Msaouel, Jennifer L Mcquade

Faculty, Staff and Student Publications

Immune checkpoint blockade (ICB) is a mainstay of treatment for advanced cancer, yet tumor response and host toxicity are heterogenous in those patients who receive ICB. There is growing interest in understanding how host factors interact with tumor intrinsic properties and the tumor microenvironment to influence the therapeutic index with ICB. Obesity, defined by body mass index, is a host factor associated with improved outcomes in select cancers when treated with ICB. While the biological mechanism for this obesity paradox is not fully understood, pre-clinical and translational studies suggest obesity may potentially impact tumor metabolism, inflammation, and angiogenesis. Herein, we …


Developing New Strategy Toward Ruthenium And Gold Redox Catalysis, Chenhuan Wang Oct 2023

Developing New Strategy Toward Ruthenium And Gold Redox Catalysis, Chenhuan Wang

USF Tampa Graduate Theses and Dissertations

This dissertation mainly contains three parts: 1) The discovery of triazole-modified Ru carbene catalysts for alkene metathesis and dynamic covalent chemistry; 2) The study of ligand assisted gold oxidative addition toward aryl iodide to achieve the alkene difunctionalization; 3) Gold redox catalysis via chiral P,N-chelating ligands. In the first part, the 1,2,3-triazole coordinated ruthenium carbene complexes (TA-Ru) were reported for the first time as a new class of modified Grubbs catalyst to achieve challenging olefin metathesis at higher temperatures without catalyst decomposition. With this new TA-Ru catalyst, cross-metathesis (CM), ring-closing metathesis (RCM) and dynamic covalent chemistry (DCvC) were achieved. The …


Tinjauan Literatur Sistematis Terhadap Penerapan Sistem Klasifikasi Khusus Di Perpustakaan, Euis Sri Nurhayati, Nina Mayesti Oct 2023

Tinjauan Literatur Sistematis Terhadap Penerapan Sistem Klasifikasi Khusus Di Perpustakaan, Euis Sri Nurhayati, Nina Mayesti

Jurnal Ilmu Informasi, Perpustakaan, dan Kearsipan

The Dewey Decimal Classification (DDC) is a widely implemented classification system in most libraries. However, its usage has declined over the past four decades, and libraries are advised to undergo reclassification. Conversely, it is recognized that the implementation of specialized classification systems significantly impacts information retrieval. Therefore, the aim of this study is to elucidate the concept and methodology behind the integration of bespoke categorization frameworks within diverse libraries across Indonesia over the past decade. This study employs the Systematic Literature Review (SLR) and the Population, Intervention, Comparison, Outcome, and Context (PICOC) framework to analyze ideas, schemes, processes, and challenges …


Correction: Microrna 603 Acts As A Tumor Suppressor And Inhibits Triple-Negative Breast Cancer Tumorigenesis By Targeting Elongation Factor 2 Kinase, Recep Bayraktar, Martin Pichler, Pinar Kanlikilicer, Cristina Ivan, Emine Bayraktar, Nermin Kahraman, Burcu Aslan, Serpil Oguztuzun, Mustafa Ulasli, Ahmet Arslan, George Calin, Gabriel Lopez-Berestein, Bulent Ozpolat Oct 2023

Correction: Microrna 603 Acts As A Tumor Suppressor And Inhibits Triple-Negative Breast Cancer Tumorigenesis By Targeting Elongation Factor 2 Kinase, Recep Bayraktar, Martin Pichler, Pinar Kanlikilicer, Cristina Ivan, Emine Bayraktar, Nermin Kahraman, Burcu Aslan, Serpil Oguztuzun, Mustafa Ulasli, Ahmet Arslan, George Calin, Gabriel Lopez-Berestein, Bulent Ozpolat

Faculty, Staff and Student Publications

No abstract provided.


Tgf-Β1 In Aplysia: Role In Long-Term Changes In The Excitability Of Sensory Neurons And Distribution Of Tβr-Ii-Like Immunoreactivity, Muhammad S Khan, Eun Kim, Quentin Le Hingrat, Adam Kleinman, Alessandro Ferrari, Jose C Sammartino, Elena Percivalle, Cuiling Xu, Shaohua Huang, Thomas W Kenniston, Irene Cassaniti, Fausto Baldanti, Ivona Pandrea, Andrea Gambotto, Cristian Apetrei Oct 2023

Tgf-Β1 In Aplysia: Role In Long-Term Changes In The Excitability Of Sensory Neurons And Distribution Of Tβr-Ii-Like Immunoreactivity, Muhammad S Khan, Eun Kim, Quentin Le Hingrat, Adam Kleinman, Alessandro Ferrari, Jose C Sammartino, Elena Percivalle, Cuiling Xu, Shaohua Huang, Thomas W Kenniston, Irene Cassaniti, Fausto Baldanti, Ivona Pandrea, Andrea Gambotto, Cristian Apetrei

Faculty, Staff and Student Publications

The study provides important insights into the immunogenicity and efficacy of a tetravalent protein subunit vaccine candidate against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The vaccine induced both humoral and cellular immune responses in nonhuman primates with controlled SIVagm infection and was able to generate Omicron variant-specific antibodies without specifically vaccinating with Omicron. These findings suggest that the tetravalent composition of the vaccine candidate could provide broad protection against multiple SARS-CoV-2 variants while minimizing the risk of immune escape and the emergence of new variants. Additionally, the use of rhesus macaques with controlled SIVsab infection may better represent vaccine …


Ligand-Displaying Escherichia Coli Cells And Minicells For Programmable Delivery Of Toxic Payloads Via Type Iv Secretion Systems, Yang Grace Li, Kouhei Kishida, Natsumi Ogawa-Kishida, Peter J Christie Oct 2023

Ligand-Displaying Escherichia Coli Cells And Minicells For Programmable Delivery Of Toxic Payloads Via Type Iv Secretion Systems, Yang Grace Li, Kouhei Kishida, Natsumi Ogawa-Kishida, Peter J Christie

Faculty, Staff and Student Publications

Bacterial type IV secretion systems (T4SSs) are highly versatile macromolecular translocators and offer great potential for deployment as delivery systems for therapeutic intervention. One major T4SS subfamily, the conjugation machines, are well-adapted for delivery of DNA cargoes of interest to other bacteria or eukaryotic cells but generally exhibit modest transfer frequencies and lack specificity for target cells. Here, we tested the efficacy of a surface-displayed nanobody/antigen (Nb/Ag) pairing system to enhance the conjugative transfer of IncN (pKM101), IncF (F/pOX38), or IncP (RP4) plasmids, or of mobilizable plasmids including those encoding CRISPR/Cas9 systems (pCrispr), to targeted recipient cells. Escherichia coli donors …


Sdc1 And Itga2 As Novel Prognostic Biomarkers For Pdac Related To Ipmn, Chuan-Long Zhang, Qian Shen, Fu-Dong Liu, Fan Yang, Meng-Qi Gao, Xiao-Chen Jiang, Yi Li, Xi-Yuan Zhang, Ge-Er En, Xue Pan, Bo Pang Oct 2023

Sdc1 And Itga2 As Novel Prognostic Biomarkers For Pdac Related To Ipmn, Chuan-Long Zhang, Qian Shen, Fu-Dong Liu, Fan Yang, Meng-Qi Gao, Xiao-Chen Jiang, Yi Li, Xi-Yuan Zhang, Ge-Er En, Xue Pan, Bo Pang

Faculty, Staff and Student Publications

The existing biomarkers are insufficient for predicting the prognosis of pancreatic ductal adenocarcinoma (PDAC). Intraductal papillary mucinous neoplasm (IPMN) is a precursor to PDAC; therefore, identifying biomarkers from differentially expressed genes (DEGs) of PDAC and IPMN is a new and reliable strategy for predicting the prognosis of PDAC. In this study, four datasets were downloaded from the Gene Expression Omnibus database and standardized using the R package 'limma.' A total of 51 IPMN and 81 PDAC samples were analyzed, and 341 DEGs in PDAC and IPMN were identified; DEGs were involved in the extracellular matrix and tumor microenvironment. An acceptable …


Caregiver Perspectives On The Daily Function Of People Living With Hnrnph2-Related Neurodevelopmental Disorder: Developing A Conceptual Model, Rachel Salazar Oct 2023

Caregiver Perspectives On The Daily Function Of People Living With Hnrnph2-Related Neurodevelopmental Disorder: Developing A Conceptual Model, Rachel Salazar

Seton Hall University Dissertations and Theses (ETDs)

Introduction: Neurodevelopmental disorders are a group of conditions that start in childhood and lead to impairments in functioning. HNRNPH2-related neurodevelopmental disorder is an ultra-rare disorder in which individuals present with cognitive, behavioral, language and motor function impairments that often leads to reliance on their caregivers. Existing conceptual models of neurodevelopment are not specific to this ultra rare disorder and do not highlight the caregiver impact of living with HNRNPH2-related neurodevelopmental disorder.

Purpose: The purpose of this study is to understand the caregiver perspective on the everyday functioning of people living with HNRNPH2-related neurodevelopmental disorder to generate a …


Looking Back From The Periphery; Situating Indonesian Provincial Museums As Cultural Archives In The Late-Colonial To Post-Colonial Era, Adrian Perkasa, Ajeng Ayu Arainikasih Oct 2023

Looking Back From The Periphery; Situating Indonesian Provincial Museums As Cultural Archives In The Late-Colonial To Post-Colonial Era, Adrian Perkasa, Ajeng Ayu Arainikasih

Wacana, Journal of the Humanities of Indonesia

Discussions on post-coloniality are often situated either in the centre of the colonizer or colonial metropole or the centre of the former colonized. The local perspective, especially in Indonesia, seems overlooked in existing literature, whereas it could be regarded as the cultural archive of the colonial era to post-independence Indonesia. Edward Said (1994) has said that cultural archives are a storehouse of a particular knowledge and structures of attitude and a reference to and structure of feelings. Gloria Wekker (2016) elaborates on the cultural archive; it has influenced historical cultural configurations as well as current dominant, cherished self-representations and culture. …


Marginalizing Colonial Violence At The Beginning Of The 21st Century The Representation Of Colonial Military Expedition To Banten Of 1808 In The National Museum Of Indonesia, Adieyatna Fajri Oct 2023

Marginalizing Colonial Violence At The Beginning Of The 21st Century The Representation Of Colonial Military Expedition To Banten Of 1808 In The National Museum Of Indonesia, Adieyatna Fajri

Wacana, Journal of the Humanities of Indonesia

The article discusses the narrative of colonial violence attached to the objects displayed in the National Museum of Indonesia in Jakarta. Taking the colonial military expedition to Banten in 1808 as a case study, this paper analyses the exhibition to show the interplay between museum as a product of colonialism and its focus on regionalism, its role in post-colonial nation-state-formation promoting national identity building, and the complexities of addressing violence. It argues that, as the museum engages with the discourse of coloniality and concurrently emphasizes national identity building, it inadvertently marginalizes the narrative of colonial violence. The findings show that, …


Examining The Role Of Microglia In Diabetic Retinopathy: Phenotypes, Mechanisms, And Therapies, Charles W. Pfeifer Oct 2023

Examining The Role Of Microglia In Diabetic Retinopathy: Phenotypes, Mechanisms, And Therapies, Charles W. Pfeifer

Arts & Sciences Graduate Student Theses and Dissertations

Retinal microglia activation and function is a pivotal component of ocular disease pathology, but their involvement in diabetic retinopathy, a complex neurovascular complication of diabetes, remains unclear. The purpose of this thesis work is to thoroughly examine features of microglia activation in DR, identify mechanistic underpinnings of their contributions to neuroinflammatory features of disease pathogenesis, and assess immunotherapeutic targeting of microglia as a potential approach to treating early-stage DR. Here, we show that chronic hyperglycemia elicits morphological, ultrastructural, and transcriptional changes in retinal microglia during early-stage DR while other elements of the retinal neurovascular unit remain unperturbed. Through chronic ablation …


Manananggal Terrorizes Ateneo: Fiction Versus The Apocalypse, Jessica Zafra Oct 2023

Manananggal Terrorizes Ateneo: Fiction Versus The Apocalypse, Jessica Zafra

Perspectives in the Arts and Humanities Asia

Excerpt: Thank you very much to the committee on the Fr. Henry Lee Irwin, SJ, Chair for naming me this year’s [2019–20] chair holder. Chair holder? I feel like furniture. It’s an honor to be acknowledged by the academe because I don’t actually have a BA, and also I am what you call a popular writer. I don’t mean that everybody reads me, but that real people read me as opposed to the people who will write papers about me, so this, this is a great honor. Actually, as we go along, I will show you that not only is …


Toll-Like Receptor 4 And Cd11b Expressed On Microglia Coordinate Eradication Of Candida Albicans Cerebral Mycosis, Yifan Wu, Shuqi Du, Lynn H Bimler, Kelsey E Mauk, Léa Lortal, Nessim Kichik, James S Griffiths, Radim Osicka, Lizhen Song, Katherine Polsky, Lydia Kasper, Peter Sebo, Jill Weatherhead, J Morgan Knight, Farrah Kheradmand, Hui Zheng, Jonathan P Richardson, Bernhard Hube, Julian R Naglik, David B Corry Oct 2023

Toll-Like Receptor 4 And Cd11b Expressed On Microglia Coordinate Eradication Of Candida Albicans Cerebral Mycosis, Yifan Wu, Shuqi Du, Lynn H Bimler, Kelsey E Mauk, Léa Lortal, Nessim Kichik, James S Griffiths, Radim Osicka, Lizhen Song, Katherine Polsky, Lydia Kasper, Peter Sebo, Jill Weatherhead, J Morgan Knight, Farrah Kheradmand, Hui Zheng, Jonathan P Richardson, Bernhard Hube, Julian R Naglik, David B Corry

Faculty, Staff and Students Publications

The fungal pathogen Candida albicans is linked to chronic brain diseases such as Alzheimer's disease (AD), but the molecular basis of brain anti-Candida immunity remains unknown. We show that C. albicans enters the mouse brain from the blood and induces two neuroimmune sensing mechanisms involving secreted aspartic proteinases (Saps) and candidalysin. Saps disrupt tight junction proteins of the blood-brain barrier (BBB) to permit fungal brain invasion. Saps also hydrolyze amyloid precursor protein (APP) into amyloid β (Aβ)-like peptides that bind to Toll-like receptor 4 (TLR4) and promote fungal killing in vitro while candidalysin engages the integrin CD11b (Mac-1) on microglia. …


Early Antibody Treatment, Inflammation, And Risk Of Post-Covid Conditions, Kelly A Gebo, Sonya L Heath, Yuriko Fukuta, Xianming Zhu, Sheriza Baksh, Allison G Abraham, Feben Habtehyimer, David Shade, Jessica Ruff, Malathi Ram, Oliver Laeyendecker, Reinaldo E Fernandez, Eshan U Patel, Owen R Baker, Shmuel Shoham, Edward R Cachay, Judith S Currier, Jonathan M Gerber, Barry Meisenberg, Donald N Forthal, Laura L Hammitt, Moises A Huaman, Adam Levine, Giselle S Mosnaim, Bela Patel, James H Paxton, Jay S Raval, Catherine G Sutcliffe, Shweta Anjan, Thomas Gniadek, Seble Kassaye, Janis E Blair, Karen Lane, Nichol A Mcbee, Amy L Gawad, Piyali Das, Sabra L Klein, Andrew Pekosz, Evan M Bloch, Daniel Hanley, Arturo Casadevall, Aaron A R Tobian, David J Sullivan, Cssc-004 Consortium Oct 2023

Early Antibody Treatment, Inflammation, And Risk Of Post-Covid Conditions, Kelly A Gebo, Sonya L Heath, Yuriko Fukuta, Xianming Zhu, Sheriza Baksh, Allison G Abraham, Feben Habtehyimer, David Shade, Jessica Ruff, Malathi Ram, Oliver Laeyendecker, Reinaldo E Fernandez, Eshan U Patel, Owen R Baker, Shmuel Shoham, Edward R Cachay, Judith S Currier, Jonathan M Gerber, Barry Meisenberg, Donald N Forthal, Laura L Hammitt, Moises A Huaman, Adam Levine, Giselle S Mosnaim, Bela Patel, James H Paxton, Jay S Raval, Catherine G Sutcliffe, Shweta Anjan, Thomas Gniadek, Seble Kassaye, Janis E Blair, Karen Lane, Nichol A Mcbee, Amy L Gawad, Piyali Das, Sabra L Klein, Andrew Pekosz, Evan M Bloch, Daniel Hanley, Arturo Casadevall, Aaron A R Tobian, David J Sullivan, Cssc-004 Consortium

Faculty, Staff and Students Publications

Post-COVID conditions (PCCs) are common and have significant morbidity. Risk factors for PCC include advancing age, female sex, obesity, and diabetes mellitus. Little is known about treatment, inflammation, and PCC. Among 882 individuals with confirmed SARS-CoV-2 infection participating in a randomized trial of COVID-19 convalescent plasma (CCP) vs control plasma with available biospecimens and symptom data, the association between early CCP treatment, cytokine levels, and PCC was evaluated. Cytokine and chemokine levels were assessed at baseline, day 14, and day 90 using a multiplexed sandwich immunoassay (Meso Scale Discovery). Presence of any self-reported PCC symptoms was assessed at day 90. …


Body Reprogramming For Fibromyalgia And Central Sensitivity Syndrome: A Preliminary Evaluation, Joseph W. Lanario, Esther Hudson, Cosima Locher, Annily Dee, Kerry Elliot, Anthony F. Davies Oct 2023

Body Reprogramming For Fibromyalgia And Central Sensitivity Syndrome: A Preliminary Evaluation, Joseph W. Lanario, Esther Hudson, Cosima Locher, Annily Dee, Kerry Elliot, Anthony F. Davies

More Faculty of Health Research

Objectives: Central sensitivity syndrome disorders such as fibromyalgia, provoke continued debate, highlighting diagnostic and therapeutic uncertainty. The Hyland model provides a way of understanding and treating the medically unexplained symptoms of central sensitivity syndromes using complexity theory and principles of adaption in network systems. The body reprogramming is a multi-modal intervention based on the Hyland model designed for patients living with medically unexplained symptoms. This preliminary, naturalistic and single-arm service evaluation set out to evaluate outcome after attending a body reprogramming course in patients living with fibromyalgia or central sensitivity syndrome. Methods: Patients diagnosed with fibromyalgia or central sensitivity syndrome …


Advancements In Dendritic Cell Vaccination: Enhancing Efficacy And Optimizing Combinatorial Strategies For The Treatment Of Glioblastoma, Robert Subtirelu, Eric Teichner, Arjun Ashok, Chitra Parikh, Sahithi Talasila, Irina-Mihaela Matache, Ahab Alnemri, Victoria Anderson, Osmaan Shahid, Sricharvi Mannam, Andrew Lee, Thomas Werner, Mona-Elisabeth Revheim, Abass Alavi Oct 2023

Advancements In Dendritic Cell Vaccination: Enhancing Efficacy And Optimizing Combinatorial Strategies For The Treatment Of Glioblastoma, Robert Subtirelu, Eric Teichner, Arjun Ashok, Chitra Parikh, Sahithi Talasila, Irina-Mihaela Matache, Ahab Alnemri, Victoria Anderson, Osmaan Shahid, Sricharvi Mannam, Andrew Lee, Thomas Werner, Mona-Elisabeth Revheim, Abass Alavi

Student Papers, Posters & Projects

Glioblastomas (GBM) are highly invasive, malignant primary brain tumors. The overall prognosis is poor, and management of GBMs remains a formidable challenge, necessitating novel therapeutic strategies such as dendritic cell vaccinations (DCVs). While many early clinical trials demonstrate an induction of an antitumoral immune response, outcomes are mixed and dependent on numerous factors that vary between trials. Optimization of DCVs is essential; the selection of GBM-specific antigens and the utilization of 18F-fludeoxyglucose Positron Emission Tomography (FDG-PET) may add significant value and ultimately improve outcomes for patients undergoing treatment for glioblastoma. This review provides an overview of the mechanism of …


A Small-Molecule Inhibitor Of Topbp1 Exerts Anti-Myc Activity And Synergy With Parp Inhibitors, Fang-Tsyr Lin, Kang Liu, Lidija A Wilhelms Garan, Helena Folly-Kossi, Yongcheng Song, Shwu-Jiuan Lin, Weei-Chin Lin Oct 2023

A Small-Molecule Inhibitor Of Topbp1 Exerts Anti-Myc Activity And Synergy With Parp Inhibitors, Fang-Tsyr Lin, Kang Liu, Lidija A Wilhelms Garan, Helena Folly-Kossi, Yongcheng Song, Shwu-Jiuan Lin, Weei-Chin Lin

Faculty, Staff and Students Publications

We have previously identified TopBP1 (topoisomerase IIβ-binding protein 1) as a promising target for cancer therapy, given its role in the convergence of Rb, PI(3)K/Akt, and p53 pathways. Based on this, we conducted a large-scale molecular docking screening to identify a small-molecule inhibitor that specifically targets the BRCT7/8 domains of TopBP1, which we have named 5D4. Our studies show that 5D4 inhibits TopBP1 interactions with E2F1, mutant p53, and Cancerous Inhibitor of Protein Phosphatase 2A. This leads to the activation of E2F1-mediated apoptosis and the inhibition of mutant p53 gain of function. In addition, 5D4 disrupts the interaction of TopBP1 …


Returning Incidentally Discovered Hepatitis C Rna-Seq Results To Copdgene Study Participants, Edwin K Silverman, Arthur Y Kim, Barry J Make, Elizabeth A Regan, Jarrett D Morrow, Craig P Hersh, James O'Brien, James D Crapo, Nadia N Hansel, Gerard Criner, Eric L Flenaugh, Douglas Conrad, Richard Casaburi, Russell P Bowler, Nicola A Hanania, R Graham Barr, Surya P Bhatt, Frank C Sciurba, Antonio Anzueto, Meilan K Han, Charlene E Mcevoy, Alejandro P Comellas, Dawn L Demeo, Richard Rosiello, Jeffrey L Curtis, Tricia Uchida, Carla Wilson, P Pearl O'Rourke Oct 2023

Returning Incidentally Discovered Hepatitis C Rna-Seq Results To Copdgene Study Participants, Edwin K Silverman, Arthur Y Kim, Barry J Make, Elizabeth A Regan, Jarrett D Morrow, Craig P Hersh, James O'Brien, James D Crapo, Nadia N Hansel, Gerard Criner, Eric L Flenaugh, Douglas Conrad, Richard Casaburi, Russell P Bowler, Nicola A Hanania, R Graham Barr, Surya P Bhatt, Frank C Sciurba, Antonio Anzueto, Meilan K Han, Charlene E Mcevoy, Alejandro P Comellas, Dawn L Demeo, Richard Rosiello, Jeffrey L Curtis, Tricia Uchida, Carla Wilson, P Pearl O'Rourke

Faculty, Staff and Students Publications

The consequences of returning infectious pathogen test results identified incidentally in research studies have not been well-studied. Concerns include identification of an important health issue for individuals, accuracy of research test results, public health impact, potential emotional distress for participants, and need for IRB permissions. Blood RNA-sequencing analysis for non-human RNA in 3984 participants from the COPDGene study identified 228 participants with evidence suggestive for hepatitis C virus (HCV) infection. We hypothesized that incidentally discovered HCV results could be effectively returned to COPDGene participants with attention to the identified concerns. In conjunction with a COPDGene Participant Advisory Panel, we developed …


Constitutive Interleukin-7 Cytokine Signaling Enhances The Persistence Of Epstein-Barr Virus-Specific T-Cells, Sandhya Sharma, Tim Sauer, Bilal A Omer, Thomas Shum, Lisa A Rollins, Cliona M Rooney Oct 2023

Constitutive Interleukin-7 Cytokine Signaling Enhances The Persistence Of Epstein-Barr Virus-Specific T-Cells, Sandhya Sharma, Tim Sauer, Bilal A Omer, Thomas Shum, Lisa A Rollins, Cliona M Rooney

Faculty, Staff and Students Publications

The efficacy of therapeutic T-cells is limited by a lack of positive signals and excess inhibitory signaling in tumor microenvironments. We previously showed that a constitutively active IL7 receptor (C7R) enhanced the persistence, expansion, and anti-tumor activity of T-cells expressing chimeric antigen receptors (CARs), and C7R-modified GD2.CAR T-cells are currently undergoing clinical trials. To determine if the C7R could also enhance the activity of T-cells recognizing tumors via their native T-cell receptors (TCRs), we evaluated its effects in Epstein–Barr virus (EBV)-specific T-cells (EBVSTs) that have produced clinical benefits in patients with EBV-associated malignancies. EBVSTs were generated by stimulation of peripheral …


Braf Inhibitors In Metastatic Colorectal Cancer And Mechanisms Of Resistance: A Review Of The Literature, Patricia Guerrero, Víctor Albarrán, María San Román, Carlos González-Merino, Coral García De Quevedo, Jaime Moreno, Juan Carlos Calvo, Guillermo González, Inmaculada Orejana, Jesús Chamorro, Íñigo Martínez-Delfrade, Blanca Morón, Belén De Frutos, María Reyes Ferreiro Oct 2023

Braf Inhibitors In Metastatic Colorectal Cancer And Mechanisms Of Resistance: A Review Of The Literature, Patricia Guerrero, Víctor Albarrán, María San Román, Carlos González-Merino, Coral García De Quevedo, Jaime Moreno, Juan Carlos Calvo, Guillermo González, Inmaculada Orejana, Jesús Chamorro, Íñigo Martínez-Delfrade, Blanca Morón, Belén De Frutos, María Reyes Ferreiro

Faculty, Staff and Students Publications

Metastatic colorectal cancer (mCRC) with mutated BRAF exhibits distinct biological and molecular features that set it apart from other subtypes of CRC. Current standard treatment for these tumors involves a combination of chemotherapy (CT) and VEGF inhibitors. Recently, targeted therapy against BRAF and immunotherapy (IT) for cases with microsatellite instability (MSI) have been integrated into clinical practice. While targeted therapy has shown promising results, resistance to treatment eventually develops in a significant portion of responsive patients. This article aims to review the available literature on mechanisms of resistance to BRAF inhibitors (BRAFis) and potential therapeutic strategies to overcome them.


Personal Identity And Particles: The Relativity Of Time, Internal Fluidity, And Social Progress In Orlando, Riley Eyring Oct 2023

Personal Identity And Particles: The Relativity Of Time, Internal Fluidity, And Social Progress In Orlando, Riley Eyring

International Journal of Undergraduate Research and Creative Activities

This essay examines the structural choices Virginia Woolf makes in Orlando to mirror her prose with the relative models of time the protagonist experiences throughout the story. Comparing the leading theories in particle physics at the time Woolf wrote to her work shows that she was aware of these developments and incorporated this knowledge into her writing. Specifically, the relativity of time is used to mirror the relative nature of Orlando’s identity, as they change from man to woman throughout the course of the novel.


Portland's Keystone Crustacean: Signal Crayfish Behavior, Health, & Habitat In The Tryon Creek Watershed, Kyla Marie Schmitt Oct 2023

Portland's Keystone Crustacean: Signal Crayfish Behavior, Health, & Habitat In The Tryon Creek Watershed, Kyla Marie Schmitt

International Journal of Undergraduate Research and Creative Activities

In the Portland Metro Area, the signal crayfish (Pacifastacus leniusculus) is a keystone species. Signal crayfish consume inaccessible plant matter and detritus, feed various game fish, engineer riverbeds, and are even harvested commercially for human consumption. Recognizing signal crayfishes’ multifaceted ecological and social significance, the purpose of this study was to assess the habitat factors that impact signal crayfish health and behavior in the Tryon Creek Watershed. Data collection revealed that overall, Tryon Creek crayfish were disproportionately likely to be observed in locations with high infrastructure presence levels; substrates composed of silt/sand or a combination of boulders and cobbles; culverts, …


“Mi Amparo Y Fortaleza”: Seeing Psalms Through A Trans-Iberian Worldview In Espejo Fiel De Vidas (Life’S True Mirror), Catherine Lily Wojda, Joshua Henderson, Matthew Warshawsky Oct 2023

“Mi Amparo Y Fortaleza”: Seeing Psalms Through A Trans-Iberian Worldview In Espejo Fiel De Vidas (Life’S True Mirror), Catherine Lily Wojda, Joshua Henderson, Matthew Warshawsky

International Journal of Undergraduate Research and Creative Activities

This article studies Espejo fiel de vidas (Life’s True Mirror, 1720) of Daniel Israel López Laguna as an example of Baroque Spanish poetry that reworks the book of Psalms for an audience that like the author were conversos, or New Christians, that is, Spanish and Portuguese Catholics of Jewish origin and their descendants. Likewise, it studies the geographic and spiritual journey of one such Iberian New Christian through the Hispano-Portuguese Jewish diaspora who became a practicing Jew upon settling in Jamaica. Besides showing elements of this journey in López Laguna’s paraphrase of Psalms, the article explores how the poet incorporates …


Differential Expression Analysis For The Identification Of Survival Associated Genes In Primary Bladder Cancer Using Microarray Data, Amos Ochieng Okutse, Kelvin Wangira Nyongesa Oct 2023

Differential Expression Analysis For The Identification Of Survival Associated Genes In Primary Bladder Cancer Using Microarray Data, Amos Ochieng Okutse, Kelvin Wangira Nyongesa

International Journal of Undergraduate Research and Creative Activities

Bladder cancer (BC) is a highly malignant and malevolent tumor whose incidence and mortality worldwide remains high. This paper aimed to identify the differentially expressed genes (DEGs) between normal and primary bladder cancer samples, which might be of prognostic value, and evaluate their association to clinical outcomes (survival) in patients with primary bladder cancer. A sample of 256 gene expression profiles of which 10 were normal bladder mucosae whereas 165 were primary bladder cancer tissues were downloaded from the gene expression omnibus (GEO). The limma package in R was used to perform screening for DEGs after variance reduction through quantile …


“Scandalously Bifurcated Garments”: Ecocriticism, American Pioneers, And Novelizing Women Of The West, Gillian Gauer, Elizabeth E. Tavares Oct 2023

“Scandalously Bifurcated Garments”: Ecocriticism, American Pioneers, And Novelizing Women Of The West, Gillian Gauer, Elizabeth E. Tavares

International Journal of Undergraduate Research and Creative Activities

While the Western novel is typically associated with cowboys and overarching masculine accomplishments of “settling,” the representation of women’s work beyond narratives of being “tamed” and the settling-down of motherhood has been overlooked by writers and ecocritics alike. Ecofeminist scholarship of the late 1980s and ‘90s, primed to take up such questions, focused primarily on the relationship between women and nature in abstract terms rather than on regionally-specific interpretations. This thesis, therefore, examines the representation of female-identifying protagonists in pioneer narratives of North America in three popular novels of the last century: Zane Grey’s posthumous Woman of the Frontier (1940/1998), …


Evaluating Social Inclusion: An Adaptable Measure For Use On College Campuses, Kaira L. Bird, Heide D. Island Oct 2023

Evaluating Social Inclusion: An Adaptable Measure For Use On College Campuses, Kaira L. Bird, Heide D. Island

International Journal of Undergraduate Research and Creative Activities

Gender and sexual identity discrimination are commonly reported among persons of non-heterosexual or non-cisgender identities. Sexual and gender minority (SGM) students are more likely to experience discrimination, hate crimes, poverty, sexually transmitted infections, anxiety, and depression compared to heterosexual and cisgender individuals. These marginalized experiences create a unique need for education, resources, support, and community. Greater awareness of sexual and gender minorities encourages college students to feel comfortable sharing their experiences, and openly identifying as a sexual and/or gender minority. Consequently, to retain the full breadth of diversity within university communities, centers on campus that provide programming, education, and advocacy …


Taking Action Together (Tat): An Annual, Intersectional, Peer-Based Sex Education Program, Micaela C. Frick, Rebecca Schoon Oct 2023

Taking Action Together (Tat): An Annual, Intersectional, Peer-Based Sex Education Program, Micaela C. Frick, Rebecca Schoon

International Journal of Undergraduate Research and Creative Activities

College students are at high risk for experiencing sexual violence. Living without parents, lack of understanding of consent, new relationships, high stress, and experimenting with drugs and alcohol are some factors that increase the risk of sexual violence among college students. Pacific University has existing prevention programs aimed to decrease the incidence of sexual violence, but existing workshops only target first year students and athletes. There is a gap for students who don’t fit in either category. Post-test surveys from these existing prevention programs shows that students favor peer-led workshops. Other sexual violence prevention programs report the benefits of peer-education …


Lessons As A Prevention Intern: Eliminating Sexual Violence Through School-Based Programs, Emily Spalding, Dawn M. Salgado Oct 2023

Lessons As A Prevention Intern: Eliminating Sexual Violence Through School-Based Programs, Emily Spalding, Dawn M. Salgado

International Journal of Undergraduate Research and Creative Activities

Every 73 seconds another person in America is sexually assaulted. For my senior practicum, I worked at Sexual Assault Resource Center, which provides advocacy and support services, including crisis intervention and counseling, for survivors of sexual violence. My goals for my time with SARC included developing knowledge and skills related to being a trauma therapist, learning about how a nonprofit operates, and gaining an understanding of sex education and sexual violence prevention programs. As a Sexual Assault Advocate and Education and Prevention Intern at SARC, my primary responsibilities involved engaging in community outreach events, delivering educational workshops, and presenting prevention …


Presence And Abundance Of Antibiotic Resistance Genes At An Organic Goat Dairy Farm, Janice Marie Parks, Noah Askew, Jack Woodrow Creagh-Grave, Gyorgyi Nyerges Oct 2023

Presence And Abundance Of Antibiotic Resistance Genes At An Organic Goat Dairy Farm, Janice Marie Parks, Noah Askew, Jack Woodrow Creagh-Grave, Gyorgyi Nyerges

International Journal of Undergraduate Research and Creative Activities

How does the use of antibiotics in animal husbandry impact antibiotic resistance genes (ARGs) and integron prevalence? This article examines the prevalence of nine ARGs (OXA-2, tetB, tetG, blaCMY-2, ereB, NDM, ermB, sul1, and sul2) and two class one integron sequences (intI1 and CS) at an organic goat dairy farm. To provide insight on how antibiotic use is contributing to the abundance of ARGs and integrons outside of where they are used, we made a comparison between our findings and the prevalence of ARGs and integrons at conventional farms from previously published studies. Samples were collected from an organic goat …