Digital Commons Network^™

Dehydrin Client Proteins Identified Using Phage Display Affinity Selected Libraries Processed With Paired-End Phage Sequencing, Sandra Helena Unêda-Trevisoli, Lynnette M.A. Dirk, Francisco Elder Carlos Bezerra Pereira, Manohar Chakrabarti, Guijie Hao, James M. Campbell, Sai Deepshikha Bassetti Nayakwadi, Ashley Morrison, Sanjay Joshi, Sharyn E. Perry

School of Integrative Biological & Chemical Sciences Faculty Publications

The late embryogenesis abundant proteins (LEAPs) are a class of noncatalytic, intrinsically disordered proteins with a malleable structure. Some LEAPs exhibit a protein and/or membrane binding capacity and LEAP binding to various targets has been positively correlated with abiotic stress tolerance. Regarding the LEAPs’ presumptive role in protein protection, identifying client proteins (CtPs) to which LEAPs bind is one practicable means of revealing the mechanism by which they exert their function. To this end, we used phage display affinity selection to screen libraries derived from Arabidopsis thaliana seed mRNA with recombinant orthologous LEAPs from Arabidopsis and soybean (Glycine max …

Study Of The Effect Of Social Anxiety And Social Support On Third Place Perceptions In Student Samples, Lillian M. Lestrange

Honors Theses

Social Anxiety Disorder (SAD) and perceived social support are well-documented to influence social interaction styles and behaviors. Some data suggests that SAD and social support relate to perceptions and familiarity with various public spaces outside of home and work (i.e., third places). This study assessed relations among social anxiety, self-perceived social support, and attitudes/beliefs about ten common third places (i.e., perceived degree of restorativeness, preference, and sentiment for these places) among undergraduate psychology students (n = 92). Contrary to predictions based on prior research (Fong et al, 2021, Case & Hunter, 2012), social anxiety symptoms did not correlate with any …

Derivation Of A Novel Antimicrobial Peptide From The Red Sea Brine Pools Modified To Enhance Its Anticancer Activity Against U2os Cells, Mona Elradi, Ahmed I. Ahmed, Ahmed M. Saleh, Khaled M.A. Abdel-Raouf, Lina Berika, Yara Daoud, Asma Amleh

Faculty Journal Articles

Cancer associated drug resistance is a major cause for cancer aggravation, particularly as conventional therapies have presented limited efficiency, low specificity, resulting in long term deleterious side effects. Peptide based drugs have emerged as potential alternative cancer treatment tools due to their selectivity, ease of design and synthesis, safety profile, and low cost of manufacturing. In this study, we utilized the Red Sea metagenomics database, generated during AUC/KAUST Red Sea microbiome project, to derive a viable anticancer peptide (ACP). We generated a set of peptide hits from our library that shared similar composition to ACPs. A peptide with a homeodomain …

Reinforcement Learning-Based Optimal Control Of Uncertain Nonlinear Systems, Miguel Garcia, Wenjie Dong

Electrical and Computer Engineering Faculty Publications

This paper considers the optimal control of a second-order nonlinear system with unknown dynamics. A new reinforcement learning based approach is proposed with the aid of direct adaptive control. By the new approach actor-critic reinforcement learning algorithms are proposed with three neural network approximation. Simulation results are presented to show the effectiveness of the proposed algorithms.

Artificial Intelligence, Machines, Devices, And Robots: Mobilizing Humanness And Intelligence In The American Techno-Landscape, Carlos A. Batres

Dissertations

This dissertation is an ethnographic inquiry of artificial intelligence (AI) in the techno-landscape of three major metropolitan areas in the United States. It traces the ways in which both experts and non-experts talk about their interactions with AI via machines, robots, and other devices, and how the ways in which people deal with AI-technologies have come to shape how we think about our own ways of going about doing things. The goal is to discern what the social ramifications of this technology may be as relationships and relations are formed betwixt and between people and artificially intelligent things.

Mutual Enjoyment: A Levinasian Conception Of Freedom, Aaron Darrisaw

Dissertations

Established scholars typically regard the philosophy of Emmanuel Levinas as one that offers a morally elevated, and even religious, sense to the meaning of ethics. He uses many descriptions to encapsulate his understanding of ethics, but a common shorthand is “the calling into question of freedom.” This dissertation aims to answer the following question: What becomes of freedom after it has been submitted to Levinas’s ethical critique? Engaging this question emphasizes the distinctively political significance of Levinas’s philosophy, a significance that is often regarded as lacking. However, my project treats freedom as a unique prism through which to interpret Levinas’s …

Machine Learning And Evaluation Of Diabetes Risk Using 2022 Brfss Data, Addie Weaver

Masters Theses

This research analyzes Behavioral Risk Factor Surveillance System data from 2022 with three machine learning models, Neural Network, Random Forest, and Support Vector Machine, to determine and compare the models’ accuracy rate of diabetes prediction. Principal Component Analysis was employed to determine principal factors of diabetes risk. Results show that the Neural Network is most accurate at 90.09 percent at predicting diabetes. Factors increasing diabetes risk include alcohol consumption, smoking, and self-perceived mental and physical health.

Biomechanics And Clinical Implications Of Fontan Upsizing, Vijay Govindarajan, Akshita Sahni, Emily Eickhoff, Peter Hammer, David M Hoganson, Rahul H Rathod, Pedro J Del Nido

Faculty, Staff and Student Publications

Background: The Fontan operation, a palliative procedure for single ventricle patients, has evolved to improve outcomes and reduce complications. While extracardiac conduit (ECC) is favored for its simplicity and potential hemodynamic benefits, concerns arise about conduit size adequacy over time. Undersized ECC conduits may cause hemodynamic inefficiencies and long-term complications, while oversizing can lead to flow disturbances, stagnation, and thrombosis, necessitating surgical revision or upsizing to optimize hemodynamics.

Objectives: The study aimed to predict the impact of upsizing by developing a patient-specific workflow using cardiac magnetic resonance-based imaging and computational fluid dynamics to assess Fontan hemodynamic changes and determine the …

Surgical Suturing Skill Assessment Using Estimated Hand Roll Angle From A Deep-Learning Computer Vision Algorithm, Jianxin Gao, Amir Mehdi Shayan, Simar P. Singh, Joe Bible, Ravikiran Singapogu, Richard E. Groff

Publications

This paper proposes a deep-learning computer vision algorithm to estimate hand roll angles for metric-based assessment of surgical suturing skills. The number of rolls metric, previously calculated directly from IMU data, counts the number of hand roll reversals during a single suture. To calculate this metric using computer vision, we apply a deep-learning algorithm that can reliably estimate hand roll angles after training on suturing videos collected on the SutureCoach simulator. Results show that the estimation accuracy of the deep-learning algorithm is robust to different video backgrounds. The number of rolls metrics were used to analyze suturing performance in the …

The Effect Of Pressure Gradients On Perceived Discomfort, Zachary Bush

All Theses

Introduction:

A pressure gradient is where high and low pressure meet. It is responsible for displacement and irritation of the skin commonly caused by tight bandages, bracelets, or socks. The irritation is at the edge where the skin is displaced by the high and low pressure. An analysis of the effect pressure gradients have on discomfort would have significant medical relevance for any device, fixture, or clothing pressed against the skin at high pressure. This primarily includes prosthetic and orthotic devices.

The bottom surface of the heel provides a naturally circular, uniform pressure profile. This makes it the optimal testing …

Eigenbin Compression For Reducing Photon-Counting Ct Data Size, Taly Gilat Schmidt, Zhye Yin, Jingwu Yao, Jiahua Fan

Biomedical Engineering Faculty Research and Publications

Background

Photon-counting CT (PCCT) systems acquire multiple spectral measurements at high spatial resolution, providing numerous image quality benefits while also increasing the amount of data that must be transferred through the gantry slip ring.

Purpose

This study proposes a lossy method to compress photon-counting CT data using eigenvector analysis, with the goal of providing image quality sufficient for applications that require a rapid initial reconstruction, such as to confirm anatomical coverage, scan quality, and to support automated advanced applications. The eigenbin compression method was experimentally evaluated on a clinical silicon PCCT prototype system.

Methods

The proposed eigenbin method performs principal …

Ellipticity-Controlled Exceptional Points From Nanoscale Metasurfaces, Benjamin Goldberg

McKelvey School of Engineering Graduate Student Theses & Dissertations

Precise control over light polarization is critical for advancing technologies in telecommunica- tions, quantum computing, and image sensing. However, existing methods for manipulating polarization around exceptional points in non-Hermitian systems, have exclusively focused on circular polarization and work with reflected light. To address this limitation, we de- velop a novel metasurface platform with high-Q resonators that enables tunable control of polarization exceptional points across arbitrary ellipticity for transmitted light. Our design uses orthogonally polarized guided mode resonators in a two-layer silicon metasurface, where careful tuning of the dipolar guided mode resonances (DGMRs) and layer spacing allows us to control the …

The Impact Of Food Law Policies On Local Community Empowerment In Indonesia’S Sustainable Food Garden Program, Tiyas Vika Widyastuti, Achmad Irwan Hamzani, Anis Masdurohatun

Indonesia Law Review

This research examines the impact of food law politics on community empowerment and sustainable agriculture in Indonesia, focusing on the Sustainable Food Garden Program (P2L). Utilizing a normative juridical analysis, it explores how legal frameworks can support or obstruct community-led agricultural initiatives. The study highlights the empowering effect of laws aligned with community goals and the challenges arising from legislation favoring industrial agriculture. It proposes legal reforms to address ambiguities and barriers, such as clarifying land tenure rights and simplifying organic certification processes. Recommendations aim to foster a legal environment conducive to sustainable, community-driven agriculture, enhancing food security and environmental …

The Influence Of Trauma History On Opiate Use Disorder In An Urban Treatment Facility In Pennsylvania, Roxanne Jeffries-Baxter, Christopher J. Burant, Joachim G. Voss

Student Scholarship

Background: Opioid use disorder is one of the most severe forms of substance use disorder and is associated with high morbidity and mortality. Opiate overdose deaths in the US are increasing every year, claiming over 100,000 lives in 2022. Psychological trauma exposure and post-traumatic stress disorder are major health problems in the United States and may contribute to the development of an opiate use disorder. The purpose of this study was to examine the association of psychological trauma exposure and post-traumatic stress disorder with opiate use disorder. Methods: This study used a retrospective design with a convenience sample size of …

Lgbtq+ College Students’ Willingness To Access Campus Health Services At A Midsized, Urban Christian University: A Study On Disparities, Samual J. Piatt, Christian Williams, Frecia Gonzalez

SPARK Symposium Presentations

Introduction

LGBTQ+ college students face inequitable health outcomes in both mental health and physical health versus non-LGBTQ+ counterparts (The Trevor Project, 2023), (Brittain et Dinger, 2015). LGBTQ+ students experience higher unwillingness and disparities in care access due to negative perceptions of and experiences with UHS providers (Hood et al, 2019). Research indicates that better provider LGBTQ+ cultural awareness contributes to a more affirming space which in turn benefits LGBTQ+ healthcare (Parmenter et al, 2020), (Prasad et al, 2023).

Methods

A 2024 cross-sectional study assessed the comfort levels of LGBTQ+ college students in accessing student health services, explore how affirming healthcare …

Polymeric Sumo-2/3 Chain Signals Are Antagonistically Regulated By The Sumo-Targeted Ubiquitin E3 Ligase Rnf4 And The Sumo-Specific Isopeptidase Senp6, Shaniah A. Irving M.A., Xiang-Dong Zhang Ph.D.

Biology Theses

Polymeric SUMO-2/3 chain modification is critical for chromosome segregation, DNA damage repair, genome stability, stress responses, and protein degradation. However, how these signals are regulated remains poorly understood. Both the SUMO-targeted ubiquitin E3 ligase (STUbL) RNF4 and the SUMO-specific isopeptidase SENP6 recognize poly-SUMO-2/3 chains through multiple SUMO-interacting motifs (SIMs). RNF4 contains four tandem SIMs within a short (~80 amino acids) region, whereas SENP6 possesses eight SIMs spanning a much larger (~500 amino acids) domain.

Our preliminary results show that overexpressing an RNF4 N-terminal fragment containing four tandem SIMs (wild type, WT), but not an inactive SIMs mutant (Mut), increases levels …

Soybean Seed Yield Distribution Within The Canopy As Affected By Nitrogen Supply, Lucia Bonfanti

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soybean [Glycine max (L.) Merr.] seed yield is influenced by the seasonal availability of resources (i.e., nutrients, light, and water). While nitrogen (N) supply is becoming a soybean yield-limiting factor, the N-induced effect in seed yield components is still unclear. The objective of this research was to assess the effect of N supply on soybean yield components distribution within the canopy. A Full-N treatment, which provided the crop with ample N supply, was compared against a Zero-N treatment in which the crop relied on soil N and biological N fixation at nine high-yielding irrigated soybean environments in Nebraska, with …

Leveraging Within-Field Spatial Variability To Optimize Soybean Yield, Seed Quality, And Profitability, Marina Marly Dalla Betta

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Optimizing yield and seed quality in soybean production is critical for both profitability and meeting market demands. However, within-field variability in soil properties poses a challenge in determining optimal management strategies to maximize soybean yield, seed quality, and profitability. This work aimed to evaluate the spatial variability of soybean fields to optimize soybean seeding rates, seed quality, and profitability. Two case studies were used to carry over this research. The first study looked at the optimal economical site-specific soybean seeding rates using 11 on-farm precision experiments across Nebraska. The second study looked at the protein and oil variability within 22 …

Case Brief: In Re R.A.F.–Beware Of The "Haunting Specter", Sam W. Scheipers

North Carolina Law Review

No abstract provided.

Make America Healthy: Reducing High Pharmaceutical Prices Without Reducing Innovation, Srividhya Ragavan

Faculty Scholarship

Cost of medication in the United States has historically remained one of the highest in the world. The conundrum that the United States has faced in balancing innovation with affordability of life-saving medications is palpable, especially when faced with the reality of patent monopolies conflicting with healthcare obligations. The result is an overflow of issues, which emphasize the need to delineate limits on innovation to balance pharmaceutical novelty with robust public health within the United States. This has increasingly shifted the focus of patent law into the realm of healthcare issues. Naturally, it leads to an inquiry about how best …

Intellectual Property, Global Inequality, And Subnational Policy Variations, Peter K. Yu

Faculty Scholarship

This chapter criticizes the oversimplification of the binary North–South debate on intellectual property, innovation, and global inequality and highlights the wide geographic, sectoral, and income inequalities within middle-income countries. It begins by explaining why the arrival of these countries has called into question the North–South debate. The chapter then moves from the widely studied subject of global inequality to the underexplored topic of national inequality. Focusing on the intellectual property context, the discussion highlights the considerable subnational variations in the economic and technological conditions of middle-income countries. To combat national inequality, this chapter concludes by recommending interventions in three areas: …

Intellectual Property, Innovation And Economic Inequality, Daniel Benoliel, Peter K. Yu, Francis Gurry, Keun Lee

Faculty Scholarship

While growing disparities in wealth and income are well-documented across the globe, the role of intellectual property rights is often overlooked. This volume brings together leading commentators from around the world to interrogate the interrelationship between intellectual property and economic inequality. Interdisciplinary and globally oriented by design, the book features economists, legal scholars, policy analysts, and other experts. Chapters address the impact of intellectual property rights on economic inequality, the effect of economic inequality on the protection and enforcement of these rights, and the potential use of innovation law and policy to help reduce economic inequality. The volume also tackles …

Introduction To Intellectual Property, Innovation And Economic Inequality, Daniel Benoliel, Peter K. Yu

Faculty Scholarship

This chapter provides an introduction to Intellectual Property, Innovation and Economic Inequality. It begins by discussing the problem of economic inequality, including the scale of that problem, types of economic inequality, and extant research on such inequality. The chapter then outlines the structure of this volume, which is divided into three parts: (1) theoretical, empirical, and policy issues; (2) intellectual property and national inequality; and (3) intellectual property and global inequality.

China, The Trips Waiver, And The Global Pandemic Response, Peter K. Yu

Faculty Scholarship

This chapter identifies three distinct reasons why China took a middle-of-the-road position in the debate on the COVID-19 TRIPS waiver at the WTO. It also recounts the country’s more assertive position in the run-up to the adoption of the Ministerial Decision on the waiver. Drawing eight lessons from the international debate on the waiver and the subsequent Ministerial Decision, the chapter offers insights into the future role China can or will play in future international policy debates at the intersection of intellectual property and public health, including during the next pandemic.

Evaluation Of Pierce’S Disease-Resistant Grapevine Cultivars In Upstate South Carolina, Annie Bruno

All Theses

Interest in wine grape production is increasing in South Carolina, but Pierce’s Disease (PD) caused by the xylem-limited bacteria Xylella fastidiosa (Xf) is a major limiting factor. Xf is spread by sap-sucking insect vectors in the Cicadellidae family such as sharpshooters. In the United States, Xf has become endemic to the southeast as global temperatures rise, causing winter temperatures to increase, which allows the bacteria to survive year-round. However, PD-resistant grapevine hybrid cultivars have become available through breeding V. vinifera genes with native American Vitis species that are resistant to Xf. In this study, the PD-resistant grapevine …

Evaluating The Roles Of Pollinators In Shaping The Floral Color Variation Of Phacelia Dubia, Katherine Riddle

All Theses

Floral color variation within a species is a common occurrence and its maintenance has been a long-standing question in evolutionary biology. Differences in flower color between populations can be shaped by pollinator-mediated selection. Pollinators can exhibit innate and learned preferences for color that may influence floral color variation. These preferences may be molded by the visual environment in which pollinators forage. Most current understanding of how pollinators shape floral color variation involves dramatic differences in dominant pollinators between populations (e.g., hawkmoth vs. bee) and most behavioral work utilized model pollinators like honeybee and bumble bee. However, less is known about …

Assessing The Potential For Photosynthetic Degradation Of Per- And Polyfluoroalkyl Substances, Marlow Thomas

All Theses

PFAS is a prevalent groundwater contaminant. It has been known to cause many health issues for humans and animals including cancer and several diseases. A main problem faced with PFAS is contamination in groundwater. Remediation strategies have been and continue to be researched to try to mitigate this issue. Current treatment strategies to mitigate PFAS include the use of granular activated carbon, ion exchange, chemical oxidation, and many hybrid treatments. There has not been one treatment technology to date that has prevailed as the best due to monetary and time constraints.

The main intention behind this research is to examine …

Sustainable Agriculture Practices And Economic Outcomes: Selected Ipm In Tomato And Cover Crop Inter-Seeding In Organic Corn In South Carolina, Rohini Sonti

All Theses

This two-chapter thesis focuses on the economic evaluation of integrating a combination of sustainable agricultural practices aimed at improving environmental resilience and farm profitability across both conventional and organic farming systems in South Carolina. The research study lays emphasis on two key areas: the use of Integrated Pest Management practices, specifically grafting and Anaerobic Soil Disinfestation (ASD) in tomato production and the inter- seeding of cover crops under different tillage systems in organic corn production.

The first chapter assesses the economic feasibility of two IPM practices: grafting and anaerobic soil disinfestation (ASD) in tomato production. Following the phase-out of methyl …

Investigation Of Chondrogenesis, Myogenesis, And Osteogenesis After 2,4-Dtbp, 2-Bp, 4-Bp, 3,5-Dtbc Exposure In Zebrafish, Haley Brashears

All Theses

Synthetic phenolic antioxidants (SPAs) are used in personal care products, food packaging, and water pipes, common SPAs include 2,4-di-tert-butylphenol (2,4-DTBP), 2-tert-butyl phenol (2-BP), and 4-tert-butyl phenol (4-BP). These compounds are detected in the environment and in human biological samples. 2,4-DTBP has been detected in cord plasma, placenta, and breast milk samples. This drives the concern regarding developmental toxicity. In human iPS cells 2,4-DTBP impairs differentiation into somites and osteoblasts. Other SPAs, like 2,6-di-tert-butyl-hydroxytoluene caused increased rates of malformations including yolk and pericardial edema, and spinal curvature in 5-day post fertilization (dpf) zebrafish. …

Toward Electrochemical Detection Of Salmonella Enterica Serovar Enteritidis On Hydroponically Grown Green Onions (Allium Fistulosum L.), Lisseth Casso-Hartmann

All Theses

The Food and Drug Administration (FDA) established standards during the growing, harvesting, packing, and holding of produce for human consumption as part of implementing the Food Safety Modernization Act (FSMA). One of the main requirements for farmers is to detect environmental pathogens such as Salmonella enterica species in water and sprout samples. S. enterica is a bacterium of significant concern due to its pathogenicity and ability to survive and persist in diverse environmental conditions. S. enterica has been associated with recalls in ready-to-eat foods. Traditional detection methods include Enzyme-Linked Immunosorbent Assay (ELISA), Polymerase Chain Reaction (PCR), and plate counting, which …