Digital Commons Network^™

Ion-Dna Interactions As A Key Determinant Of Uracil Dna Glycosylase Activity., Sharon N Greenwood, Alexis N Dispensa, Matthew Wang, Justin R Bauer, Timothy D Vaden, Zhiwei Liu, Brian P Weiser

Rowan-Virtua School of Osteopathic Medicine Departmental Research

Because of their ubiquitous presence, ions interact with numerous macromolecules in the cell and affect critical biological processes. Here, we discuss how cations including Mg²⁺ alter the enzymatic activity of a DNA glycosylase by tuning its affinity for DNA. The response of uracil DNA glycosylase (UNG2) to Mg²⁺ ions in solution is biphasic and paradoxical, where low concentrations of the ion stimulate the enzyme, but high concentrations inhibit the enzyme. We analyzed this phenomenon by modeling experimental data with a statistical framework that we empirically derived to understand molecular systems that display biphasic behaviors. Parameters from our statistical …

Ciccolella, Peg Oral History Interview, Margaret E. Ciccolella, Gene Pearson

Emeriti Society Oral History Collection

Peg Ciccolella (1985-2024) Professor of Health and Exercise Science.

Health and Exercise Science program development and change, Pacific Legal Scholars program development, chairing of and involvement in Pacific committees, chairing of health and exercise science department, the law and application to health sciences, research and publishing at Pacific, WASC accreditation, change and application of Title IX.

Student Perceptions Of The Use Of Onenote To Create A Capstone Project In A Teacher Education Program, Carmen Pena

Teaching and Learning Faculty Publications

During the Fall 2023 semester, a group of students in their first semester of the elementary education program at The University of Texas Rio Grande Valley (UTRGV) was required to use OneNote to complete a Community Case Study, which is a capstone project in the teacher education program at UTRGV. The projectconsists of three sections, which include a study of the school and district, visits to area attractions in the community, interviews with members of the community, and a final reflection on the project. The Community Case Study includes text-based files,graphics, and video. The authors used OneNote to have students …

Addition Of Biochar To Anaerobic Digestion Of Food Waste In A Uasb Reactor To Enhance Biogas Production, Michell Ortiz, Farid . Chejne, Andrea . Tamayo, Juan-Diego Otalora

Bio-Char IV

Please click Additional Files below to see the full abstract

Biochar: A Strategic And Integral Component For The Viability Of Biorefineries In Colombia, Carlos M Ceballos, Juan . Carlos Maya, Farid Chejne Janna

Bio-Char IV

Please click Additional Files below to see the full abstract

Caspase-11 Drives Macrophage Hyperinflammation In Models Of Polg-Related Mitochondrial Disease., Jordyn J Vanportfliet, Yuanjiu Lei, Muthumeena Ramanathan, Camila Guerra Martinez, Jessica Wong, Tim J Stodola, Brian Hoffmann, Kathryn Pflug, Raquel Sitcheran, Stephen C. Kneeland, Stephen A Murray, Peter J Mcguire, Carolyn L Cannon, A Phillip West

Faculty Research 2025

Mitochondrial diseases (MtD) represent a significant public health challenge due to their heterogenous clinical presentation, often severe and progressive symptoms, and lack of effective therapies. Environmental exposures, such bacterial and viral infection, can further compromise mitochondrial function and exacerbate the progression of MtD. However, the underlying immune alterations that enhance immunopathology in MtD remain unclear. Here we employ in vitro and in vivo approaches to clarify the molecular and cellular basis for innate immune hyperactivity in models of polymerase gamma (Polg)-related MtD. We reveal that type I interferon (IFN-I)-mediated upregulation of caspase-11 and guanylate-binding proteins (GBP) increase macrophage sensing of …

Core Grade 5: Rating Certainty Of Evidence—Assessing Indirectness, Gordon Guyatt, Alfonso Iorio, Hans De Beer, Andrew Owen, Thomas Agoritsas, M. Hassan Murad, Ganesan Karthikeyan, Carlos Cuello, Manya Prasad, Kevin Kim, Dalal S. Ali, Arnav Agarwal, Lars G. Hemkens, Liang Yao, Monica Hultcrantz, Jamie Rylance, Derek K. Chu, Per Olav Vandvik, Benjamin Djulbegovic, Reem A. Mustafa, Linan Zeng, Prashanti Eachempati, Bram Rochwerg, Kameshwar Prasad, Victor M. Montori, Romina Brignardello-Petersen

Peninsula Dental School

This fifth article in a seven part series presents the Core GRADE (Grading of Recommendations Assessment, Development and Evaluation) approach to systematic reviews, clinical practice guidelines, and health technology assessments and addresses issues of indirect evidence. Guideline developers and health technology assessment practitioners must carefully specify the population, intervention, comparison, and outcome (PICO)—their target PICO—and consider the extent to which the best available evidence matches their target. When target and study PICOs differ substantially, studies provide indirect evidence and Core GRADE users may rate down the certainty of evidence as a result of this indirectness. Whether examining studies from a …

Factors Impacting The Variability Of Post-Fire Forest Regeneration In Central European Pine Plantations, Florent Jouy, Maren Schüle, Yojana Adhikari, Anja Binder, Danica Clerc, Werner Gerwin, Thilo Heinken, Thomas Raab, Frank Repmann, Susanne Rönnefarth, Marina Schirrmacher, Marie-Therese Schmehl, Jens Schröder, Pierre L. Ibisch

Aspen Bibliography

Fire is increasingly posing a risk to forests and plantations, even in the temperate latitudes of central Europe. Little is known about fire ecology in this region, and therefore, appropriate approaches for the management and reforestation of burned sites are mostly lacking. In a Scots pine plantation region in Brandenburg (northeast Germany), the early tree regeneration of two nearby areas that burned 1 year apart was investigated. We observed that 3 years after the fire events, the forest in one study area showed a relatively high regeneration with a mean density of 7765 saplings/ha, clearly dominated by European aspen (93%); …

A Catalytic Pathway For The Formation Of Cyanobenzene In Nitrogen-Rich Environments And The Spectroscopy Of The Reactive Intermediates, Vincent J. Esposito, Silvia Alessandrini, David Dubois, Ryan Fortenberry

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The catalytic reaction of isocyanobenzene (C₆H₅NC) with NCN⁻ produces cyanobenzene (C₆H₅NC) through various highly stable reactive intermediate species. Nitrogen-rich environments such as Titan’s atmosphere serve as favorable locations to study reaction pathways involving nitrogenated species contributing to organic growth. Formation pathways of cyanobenzene have been characterized, but none with the contribution of anions or phenyl groups. In regions with a high abundance of nitrogen anions, such as Titan’s atmosphere, reactions with species such as NCN⁻ may play a role in the formation of cyanobenzene. Highly accurate computational methods are used …

Building Resilience: The Role Of Social Rank And Alliances, Jarad Reiss

Masters Theses (Archived)

Resilience, the ability to recover from adversity, is a cornerstone of psychological well-being and a key to human thriving and mental fortitude. This study examines resilience as an adaptive psychological mechanism and situates it within an evolutionary framework to provide a clearer understanding of resilience across diverse populations, personalities, and cultures. Specifically, this study investigates whether perceived social rank predicts resilience and explores how social support and alliances mediate this relationship in a population of human service professionals. Participants (N = 256) completed an online survey that included measurements of resilience, social rank perceptions, personality, and coalition-related variables. Results suggest …

Network Analysis Of Antimicrobial Resistance In Staphylococcus Aureus: Characterization Of Hub Genes And Their Functional Implications, Md Imran Hasan, Davida Smyth, Jeong Yang, Ashley Teufel

Masters Theses (Archived)

Antimicrobial resistance is a major cause of morbidity and mortality in patients with S. aureus infections. In this study, we analyzed genes, molecular mechanisms, and pathways driving drug resistance in S. aureus using network analysis. Using whole-genome sequencing (WGS) data and systems biology approaches, we identified 229 AMR-associated genes and constructed a protein-protein interaction network among these genes. Through network topology and functional enrichment analyses, we not only confirmed their association with resistance, but also highlighted the central roles of these genes in resistance pathways, such as efflux, target replacement, and target protection, which are directly linked to multiple drug …

Honey Bee & Reward Loss: A Deep Dive Into The Alarm Pheromone, Citlalli Guadarrama

Masters Theses (Archived)

No abstract provided.

Evaluation Of Schoenoplectus Californicus In An Artificial System For E. Coli Removal, Kimia Ahmadiyehyazdi

Masters Theses (Archived)

Green technologies and nature-based solutions like constructed wetlands have be come more popular due to their environmentally friendly approach to remediation, low cost of construction, and maintenance. Also, they have shown efficiency in removing a wide range of contaminants. However, choosing a suitable aquatic plant for this system is one of the questions that should be answered wisely. Schoenoplectus californicus– Giant Bulrush is an aquatic plant that was tested in this controlled constructed wetland, and the final concentration of the targeted microbial contamination, which is E. coli, was reduced remarkably. Also, for this study, soil was removed from the …

Unforeseen Implications Of Assisted Reproductive Technology Post-Dobbs, Isabele M. Castle

University of Dayton Law Review

No abstract provided.

Investigating Potential Sugar-Related Uncertainties In A Proxy For Ancient Co2, Liam Cooper

Student Theses and Dissertations

The ε_p proxy for ancient pCO₂ can potentially estimate ancient pCO₂ as from the evolution of rubisco-based photosynthesis, using the difference in stable carbon isotope ratios (δ¹³C) between fixed and inorganic carbon, assuming this difference is proportional to pCO₂. This study aims to address uncertainty with the use of photosynthetic microbes in proxies for ancient pCO₂. While previous studies address uncertainties related to the δ¹³C of initial fixed photosynthate (e.g., growth rate), we aim to address the effects of downstream carbon allocation. Specifically, if a significant fraction of fixed …

Reproductive Natural History Of The American Grass Mantid, Thesprotia Graminis, Bridget N. Battaglia, Charles Watson

Masters Theses (Archived)

The American grass mantis, Thesprotia graminis, is an understudied mantis native to Texas, including the campus of Texas A&M-SA. Mantids are influential members of ecosystems as a major predator of small insects. Therefore, measuring elements of their natural history, such as maternal investment, timing of oviposition, and fecundity, will add to our understanding of this specie’s ecology in grassland communities. In controlled lab conditions, we measured the mass of every instar, mantids of both sexes, and the masses of oothecas (egg cases) pre- and post-hatch. Interestingly, we found that this species lays multiple, smaller oothecas throughout the reproductive season. …

Thermal Physiology Of The Giant Day Gecko, Phelsuma Grandis, Infinity Alvarez

Masters Theses (Archived)

Ectotherms rely on their environment to regulate and maintain their body temperature. For this reason, environmental fluctuations strongly impact their biology. Lizards are ectotherms that are suitable models to investigate thermal physiology. However, the bulk of this research has been studied using new world Anolis lizards. In this study, the giant day gecko, (P.grandis), native to Madagascar but invasive in Florida, was selected as a model for comparison. In our physiotype of P.grandis we included measurements such as metabolic rates, sprint speed at relevant temperatures, thermal preference, critical thermal minimum, and voluntary thermal maximum. Our findings showed that …

Impacts Of Land Development On Soil Microdiversity And Antibiotic Production, Dennis Guillen Castro, Robert Garcia, Jonathan Castro, Davida Smyth

Masters Theses (Archived)

The impact of land development on soil microbial diversity and antibiotic production is critical due to industrial expansion and the scarcity of effective antibiotics. Low Impact Development (LID) aims to preserve ecosystems, but its effectiveness in maintaining microbial diversity is uncertain. This study compares soil samples from nine sites: undisturbed (UD), residential (RD), and Madla Greenway (GW) within the VIDA development area and Texas A&M University-San Antonio campus. Isolated microbes were screened for antibiotic production and genetically characterized. Preliminary findings indicate that UD sites harbor greater microbial abundance, and a higher proportion of antibiotic-producing microbes compared to GW and RD …

Towards Universal Chemosensory Testing: Needs, Barriers, And Opportunities, Steven D. Munger, Kai Zhao, Linda A. Barlow, Duncan Boak, Katie Boateng, Susan E. Coldwell, Pamela Dalton, Richard L. Doty, Jennifer E. Douglas, Valerie Duffy, Frank A. Franklin, John E. Hayes, Howard J. Hoffman, Patrice Hubert, Paule V. Joseph, Jeb M. Justice, Joshua M. Levy, Julie A. Mennella, Marianna Obrist, M. Yanina Pepino, Jayant M. Pinto, Edmund A. Pribitkin, Christopher T. Simons, Mark W. Albers, Valentina Parma

Department of Otolaryngology - Head and Neck Surgery Faculty Papers

Millions of people in the United States experience a reduced or distorted ability to smell or taste. Chemosensory disorders such as anosmia (the inability to smell), parosmia (distorted smell), or dysgeusia (altered taste) have major impacts on health and quality of life including difficulty sensing dangers such as fire or spoilage, a diminished palatability of food and drink that can negatively influence diet and nutrition, feelings of social isolation, and an increased incidence of frailty, anxiety, and depression. Smell or taste dysfunction can also be symptoms of other health issues, including sinonasal disease, cancer, or neurodegenerative disease. Aging adults are …

Historical Perspectives In Volatility Forecasting Methods With Machine Learning, Zhiang Qiu, Clemens Kownatzki, Fabien Scalzo, Eun Sang Cha

All Faculty Open Access Publications

Volatility forecasting for financial institutions plays a pivotal role across a wide range of domains, such as risk management, option pricing, and market making. For instance, banks can incorporate volatility forecasts into stress testing frameworks to ensure they are holding sufficient capital during extreme market conditions. However, volatility forecasting is challenging because volatility can only be estimated, and different factors influence volatility, ranging from macroeconomic indicators to investor sentiments. While recent works show promising advances in machine learning and artificial intelligence for volatility forecasting, a comprehensive assessment of current statistical and learning-based methods is lacking. Thus, this paper aims to …

Monitoring Reaction Kinetics In Alternative Cementitious Systems Through Electrical Conductivity Measurements, Julson Aymard Tchio, Elijah Adesanya, Rafal Sliz, Brant Walkley, Juho Yliniemi

Alkali Activated Materials and Geopolymers: High-end technical applications [2025]

Please click Additional Files below to see the full abstract

Unlocking Musculoskeletal Anatomy: Enhancing Second-Year Medical Students’ Knowledge Recall And Self-Efficacy With A Physician-Led Ultrasound Session, Nathan Cowan, Abdus Sattar, Qian Wu, Allison N. Schroeder

Faculty Scholarship

Introduction: The purpose of this study was to determine whether exposure to musculoskeletal (MSK) ultrasound (US) enhanced medical students’ knowledge and self-efficacy in understanding basic US principles, MSK anatomy and physical examination, and use of US to evaluate MSK structures. Materials and Methods: Forty-three second-year medical students were divided into control (n = 22) and experimental (n = 21) groups. All participants completed a pre-session self-efficacy questionnaire and were encouraged to view a recorded 20-min MSK US lecture. All participants then attended a physician-led 35-min MSK US hands-on scanning session covering the shoulder and knee. The control group took a …

Functionalizing Polyethersulfone Membranes: Using Nmr To Avoid Pitfalls When Using Uv-Induced Polymerization To 'Graft From' Surfaces, Priyanka Suresh, Megan M. Sibley, Amy C. Che, Christine E. Duval

Faculty Scholarship

For nearly 30 years, UV-induced free radical polymerization has been used to modify the surface chemistry of polyethersulfone (PES) membranes, films, and coatings. The initial mechanism for the grafting process was introduced in the 1990s and supported without direct evidence of covalent bond formation. Since then, claims of ‘grafting from’ membranes in the literature rely on similar evidence using a combination of gravimetry, attenuated total reflectance infrared spectroscopy, contact angle goniometry, water sorption, and/or water permeance. While these techniques provide evidence of the presence of a polymer coating, they do not provide direct evidence of covalent bond formation between the …

Effect Of Anesthesia And Diurnal Variation On Chronic Vagus Nerve Activity In Rats, Bhanu P. Kotamraju, Grant A. Mccallum, Dominique M. Durand

Faculty Scholarship

The vagus nerve, serving as a pivotal link between the brain and vital organs, regulates crucial physiological functions. It plays a central role in maintaining homeostasis within the body and must dynamically adapt to changing conditions such as anesthesia or sleep. While vagal tone, typically estimated indirectly from heart rate variability, has been extensively studied, direct measurement of vagal activity during sleep and anesthesia remains unreported to date. Recent technological advancements have facilitated the recording of vagus nerve activity in freely moving rodents using small, highly flexible carbon nanotube yarns. Consequently, it is now feasible to directly investigate vagal activity …

Histone Methyltransferase Ash1l Primes Metastases And Metabolic Reprogramming Of Macrophages In The Bone Niche, Chenling Meng, Kevin Lin, Wei Shi, Hongqi Teng, Xinhai Wan, Anna Debruine, Yin Wang, Xin Liang, Javier Leo, Feiyu Chen, Qianlin Gu, Jie Zhang, Vivien Van, Kiersten L Maldonado, Boyi Gan, Li Ma, Yue Lu, Di Zhao

Faculty, Staff and Student Publications

Bone metastasis is a major cause of cancer death; however, the epigenetic determinants driving this process remain elusive. Here, we report that histone methyltransferase ASH1L is genetically amplified and is required for bone metastasis in men with prostate cancer. ASH1L rewires histone methylations and cooperates with HIF-1α to induce pro-metastatic transcriptome in invading cancer cells, resulting in monocyte differentiation into lipid-associated macrophage (LA-TAM) and enhancing their pro-tumoral phenotype in the metastatic bone niche. We identified IGF-2 as a direct target of ASH1L/HIF-1α and mediates LA-TAMs' differentiation and phenotypic changes by reprogramming oxidative phosphorylation. Pharmacologic inhibition of the ASH1L-HIF-1α-macrophages axis elicits …

Participatory Science Newsletter 2025_05_20, Mairi Poisson, Malin Clyde, Alyson L. Eberhardt

Participatory Science News

In this edition of the UNH Participatory Sciences Newsletter, we offer news and resources on The Power of Participatory Sciences. These include a story about UNH graduate student Lauren White's work using participatory science data about horseshoe crab spawning in the Great Bay. Another story highlights UNH's Coastal Research Volunteers Beach Profiling Project and another outlines how many UNH researchers at UNH are working with local communities to find solutions to environmental problems. A final article shares information about the 2025 conference for the Association for Advancing Participatory Sciences and the poster presented by scholars and students from UNH.

Distribution Pattern And Abundance Dynamics Of Asian Openbill (Anastomus Oscitans) In Rice Field Throughout Peninsular Malaysia, Badrulhadza Amzah, Rosli Ramli, Noorhidayah Mamat

Turkish Journal of Zoology

The Asian Openbill (Anastomus oscitans) plays a crucial role in rice field ecosystems by preying on invasive apple snails (Pomacea spp.), potentially reducing the reliance on chemical molluscicides. This study investigated the distribution and abundance dynamics of the stork across major rice granaries in Peninsular Malaysia. Surveys were conducted at 111 sampling points within 30 localities across 11 states during five consecutive rice seasons (2022–2024), with bird counts obtained through binoculars and digital photography. Results indicate that storks are highly concentrated on the northern and central west coasts, where rice fields provide abundant foraging opportunities. In the northern regions (Perlis, …

International Changemaker Grant Sends Students To Work In Global Communities, Unh Communications And Public Affairs

UNH Today Archive

No abstract provided.

Dietary Intake Of Protein By Food Source And Incident Hypertension Among Diverse Us Adults: The Mesa Study, Ji Yun Tark, Ruosha Li, Bing Yu, Alexis C Wood, Nikhil S Padhye, Marcia C De Oliveira Otto

Faculty, Staff and Student Publications

Background: Dietary guidelines recommend adequate protein intake from diverse sources for optimal blood pressure; however, its role in hypertension risk remains unclear. We examined prospective associations of protein intake and diversity, overall and by source, with hypertension risk in the MESA (Multi-Ethnic Study of Atherosclerosis) study.

Methods and results: Among 2294 participants aged 45 to 84 years without hypertension at baseline, total, animal, and plant protein intake was assessed using a 120-item food frequency questionnaire. Protein diversity was evaluated using count and the dissimilarity index. Over a 9-year median follow-up, 1356 hypertension cases were identified through blood pressure measurements and …

Predicting Strut Geometry Of Pcl And Dmso2 Biocomposites From Nozzle To Deposition In Bio-Scaffold 3d Printing, Jae-Won Jang, Kyung-Eun Min, Jun-Hee Park, Cheolhee Kim, Sung Yi

Mechanical and Materials Engineering Faculty Publications and Presentations

The field of tissue engineering increasingly demands accurate predictive models to optimize the 3D printing process of bio-scaffolds. This study presents a unified numerical model that predicts extrusion velocity and strut diameter based on printing conditions and the material properties of polycaprolactone (PCL) and dimethyl sulfone (DMSO2) composites. The extrusion velocity was simulated using Navier–Stokes equations, while the strut diameter was calculated via a surface energy model. For PCL, the extrusion velocity showed a temperature coefficient of 23.3%/°C and a pressure coefficient of 19.1% per 100 kPa; the strut diameter exhibited a temperature coefficient of 21.6%/°C and a pressure coefficient …