Digital Commons Network^™

Density-Based And Model-Based Clustering With Tidyclust In R, Brendan S. Callender

Master's Theses

Clustering is a fundamental technique in unsupervised learning that can be used to find hidden patterns and structures within unlabeled data. The tidyclust package in R provides a unified interface for applying various clustering techniques to data. This paper outlines the addition of density-based clustering with DBSCAN, and model-based clustering using Gaussian mixture models (GMMs) to the tidyclust package. DBSCAN can be performed using the db_clust() function and makes use of the dbscan package implementation as its engine. GMMs can be fit using the gm_clust() function which makes use of the mclust package implementation. This paper highlights the changes made …

When Trees Disappear: Understory Successional Implications Of Sudden Oak Death And High-Severity Wildfire In Big Sur, California, Sam J. Balthazard

Master's Theses

The rapidly emerging disease sudden oak death, caused by the non-native pathogen Phytophthora ramorum, is transforming coastal California forests by driving extensive mortality of tanoak (Notholithocarpus densiflorus) and increasing fire severity. As a novel disturbance, sudden oak death and its interaction with wildfire may catalyze unexpected shifts in successional trajectories and reconfigure forest understory communities. Furthermore, how tanoak influences the forest understory and how its decline might reshape understory dynamics remain poorly understood. We hypothesize that disease alone and the compounding disturbances of disease and wildfire alter successional dynamics, and that the potential functional extinction of N. …

Wetland Treatment Systems For Municipal Wastewater At A Bourbon Distillery And Potential Value Of Incorporating Stillage For Water Treatment Enhancement, Katherine Ristola, Tiffany Messer, Czarena Crofcheck, Tyler Barzee, Wayne Sanderson

Epidemiology and Environmental Health Faculty Publications

The use of constructed treatment wetlands as a secondary treatment method for wastewater effluent from package treatment plants and distillery stillage has the potential to be an innovative, sustainable method for improving water quality. However, the use of constructed wetlands to treat bourbon whole stillage and a distillery bottling facility’s wastewater treatment plant effluent has been limited. Therefore, the objectives of this study were to (1) quantify constructed wetland water quality improvement as a secondary treatment method for a distillery’s municipal wastewater, (2) optimize treatment design to meet wastewater effluent discharge limits, and (3) quantify the potential to enhance constructed …

Dobbs, State Policies, And Minors’ Interests In An Open Future, Lois A. Weithorn

UC Law SF Journal on Gender and Justice

The United States Supreme Court discarded five decades of established federal constitutional doctrine with its decision in Dobbs v. Jackson Women’s Health Organization. Following Dobbs, legislators in some states rushed to restrict the decisions of pregnant persons. Litigation, executive actions, and voter initiatives, including attempts to amend state constitutions, quickly followed. At the time of this writing, access to abortion is severely restricted in large swaths of the country. Increasing numbers of pregnant persons have sought out-of-state services through telehealth or cross-border travel. Some states have created new forms of criminal or civil liability in an effort to prevent its …

Diagnosis By Algorithm: The Transformative Impact Of Social Media–Driven Adhd Self-Diagnosis For Women Over 30 And The Proposal Of Neurotype Strain Theory, Rebecca Lynn Sevin

Dissertations

This dissertation explores the phenomenon of adult women who self-diagnosed Attention Deficit Hyperactivity Disorder (ADHD) through content encountered on social media platforms. Drawing on interpretive phenomenological analysis of ten in-depth interviews, the study investigates the emotional, cognitive, and institutional dimensions of this self-diagnosis process. Participants, all over the age of 30, reported that social media played a transformative role in helping them recognize ADHD traits in themselves. Rather than being misinformed or seeking shortcuts, participants engaged thoughtfully with ADHD-related content, valuing lived experience itself as a meaningful source of recognition and reflection. Their engagement was not primarily with educational materials …

Developing Machine Learning Models And Graphene-Based Flexible Humidity And Temperature Sensors For Machine-Learning-Assisted Sensing, Seth Hajian

Dissertations

Flexible sensor technology has recently gained tremendous momentum in both academic research and industrial applications, transitioning from conceptual frameworks to practical implementations across diverse fields. This remarkable advancement can be attributed to several converging factors, including the maturation of nanomaterial science, the advancements of machine learning algorithms, and the critical demand for intelligent sensing solutions in healthcare, environmental monitoring, and industrial automation. The growing emphasis on personalized medicine and real-time health monitoring, accelerated by global health challenges, has further highlighted the necessity for accurate, cost-effective, and adaptable sensing platforms. This dissertation presents the fulfillment of three interconnected research projects focused …

Engineering Microphysiological Systems To Investigate Cellular Responses To Biophysical Cues In Human Tissue Microenvironments, Mehran Mansouri

Theses

Cells constantly sense and respond to biophysical cues in their microenvironment. Understanding how they interpret these mechanical signals is essential for advancing tissue modeling, studying disease mechanisms, and developing more predictive in vitro platforms. This dissertation presents a series of engineered microphysiological systems (MPS) designed to investigate how mechanical stimuli shape cellular behavior in distinct human tissue microenvironments. In Aim 1, I developed a reconfigurable microfluidic platform that mimics key features of human vascular barriers. This system supports the integration of porous membranes, 3D hydrogels, and flow channels, enabling precise control over both mechanical and biochemical cues. The modularity of …

Occupational Stress: Lifestyle And Health In Blue- And White-Collar Workers In The United States, Carice T. Craffey

Dissertations and Theses

ABSTRACT

Occupational Stress: Lifestyle and Health in Blue- and White-Collar Workers in the United States

by

Carice Craffey

Advisor: Catherine M. Schooling, Ph.D.

Background: Heart disease and diabetes are leading causes of death in the United States and globally, particularly heart disease in men. Employment conditions can contribute to illness and death. Occupational or job stress (OS) is a potential contributor to heart disease and diabetes, but its conceptualization and role for men and women remain unclear. To address this gap, I conceptualized OS, then examined the role of OS in heart disease and diabetes.

Methods: I used a literature …

Thriving In The Tropics, Hansika K. Herath, D. Nicholas Mcletchie

Biology Faculty Publications

Increasing frequency and intensity of global warming pose a profound threat to plant species persistence. Most investigations on plants' resilience to heat events focus on few genotypes of model species. Novel insights into resilience mechanisms will be gained by focusing on natural variation in thermotolerance and its relationship to local-abiotic factors. Additionally, studying species that survived 'ancient periods' of high temperatures provides insight into resilience mechanisms. Within a species, we assessed spatial thermotolerance variation, its association with temperature and light, while testing for thermotolerance sex differences and its relationship with population sex ratios. We used Marchantia inflexa, a species with …

“Everything Is A New Challenge For Each Of Us”: A Qualitative Exploration Of Elementary Newcomer Students’ And Families’ Lived Experiences Of Acclimating To U.S. Schooling, Maureen Margaret Medeiros

Social Justice in Educational Leadership EdD Dissertations

Newcomer students, defined as foreign-born children who have attended U.S. schools for less than three years, are entering U.S. schools in ever-increasing numbers. Schools are often the first institutions to welcome immigrants to local communities, and meeting the linguistic, socioemotional, and academic needs of newcomer students and their families is essential to their success. However, data on newcomers is not publicly accessible, which makes them not easily visible in the school system. Furthermore, newcomers may have socioemotional challenges due to their prior life experiences, the immigration process, and then the likely challenges of limited English fluency which can lead to …

Criminal Organizations And Nuclear Threats In Southeast Asia, Gary Ackerman, Thomas Guarrieri, Justin V. Hastings, Steven Hoodjer

International Journal of Nuclear Security

Increasing global interest in nuclear energy and peaceful uses of nuclear technology has led to facilities in emerging countries with nuclear materials and radioactive sources that could be stolen, sabotaged, or otherwise accessed by criminals. In this paper, we created a framework to assess the motivations and capabilities of criminal networks and measure the threats they may pose to different stages of the nuclear fuel cycle in emerging nuclear states. We applied the framework to a unique dataset, capturing characteristics of criminal organizations active in Southeast Asia, which allowed us to assess which criminal organizations are most likely to pose …

Poa Annua Ecology, Biology, And Integrated Weed Management Practices In Turfgrass, David Ervin

Environmental Science and Management Faculty Publications and Presentations

Poa annua L. is one of the most widespread and troublesome weeds of turfgrass. It persists as both an annual and perennial and is adaptable to almost any static maintenance regime, including adaptation to mowing heights and evolution of herbicide resistance. This management guide is intended to provide stakeholders with a summary of new and existing knowledge on integrated Poa annua management. Here we review the basic biology and ecology, as well as practical integrated weed management (IWM) strategies developed for its control.

Climate Resilience: A Typology, Shi-Ling Hsu

UMKC Law Review

No abstract provided.

The Growing Of Freedom, And The Participatory Methodology Of Gardening: An Account Of John Dewey’S Conception Of “Freedom”, Jessica Clare Soester

Center for Dewey Studies Essay Award

In this paper I argue that for American Pragmatist John Dewey, freedom is better understood as a verb or gerund— "freedom-ing." A distinctive dimension of Dewey’s conception of “freedom” is that part of having freedom is the participation in the achieving of it, a continual process—in Dewey’s account, freedom is never won for good but must be constantly re-won. Persons must have the opportunity of being a part of their creative activity—directing and understanding their activity. Without freedom we stagnate, we are left with empty dictates; we do not inquire, new paths are not disclosed, we don't generate new structures …

The Influence Of Black Soldier Fly Residue On Watermelon Growth And The Properties Of A Coarse-Textured Ultisol, Benedict Onyebuchi Unagwu, Chidiebere Fransica Odu, Chinedu Felix Amuji, Michael Onyedika Eze, Nancy Ekene Ebido, Chidike Ude Abara, Chioma Rosita Igboka, Uchechukwu Paschal Chukwudi

Chemistry Faculty Research & Creative Works

Improving the fertility status of nutrient-depleted soils is critical to achieving food security. The negative effects of chemical fertilizers on soils necessitate the global quest for eco-friendly, effective, and sustainable alternatives. This work assessed the effect of black soldier fly (BSF) residue application on soil properties and watermelon growth. The study was set up in a completely randomized design with six replications. The treatments were BSF1 (BSF applied at 10 t ha⁻¹), BSF2 (20 t ha⁻¹), BSF3 (30 t ha⁻¹), and control. The plant data collected in this study were vine length, leaf width, …

Measuring Children’S Reward And Punishment Sensitivity: An Initial Psychometric Evaluation Of The Contingency Response Rating Scale, Daniel A. Waschbusch, Vanessa T. Cao, Delshad M. Shroff, Pevitr S. Bansal, Michael T. Willoughby

Department of Psychology Faculty Scholarship and Creative Works

Existing research shows that children’s responses to rewards and punishments are essential for understanding attention-deficit/hyperactivity disorder, oppositional defiant disorder, conduct disorder, and callous-unemotional traits. The present study developed the Contingency Response Rating Scale (CRRS) to fulfill the need for a reliable and valid measure of children’s contingency response style that is brief, easy to use in applied settings, and provides additional information to existing clinical measures. We examined the psychometric properties of the CRRS in a sample of 196 children (ages 5–12), most of whom were referred to evaluate attention and behavior problems in an outpatient clinic. Using principal axis …

Unpacking Open Source Bio, Jorge L. Contreras

Indiana Law Journal

For at least a quarter of a century, life science researchers around the world have undertaken initiatives loosely based on principles, goals, and institutional structures derived from the open source software (OSS) movement—approaches that I term “open source bio.” Yet open source bio lacks a clear definition and set of guiding principles. Given public calls for greater openness in life science research, it is useful to understand how open source bio projects have fared over the past quarter century: how they were structured, what they hoped to achieve, and, as social and policy experiments, whether or not they were successful. …

Live/Recorded Lecture Delivery Using The Hyflex Kit, Greg Byrne

Case studies: Digital Education

The School of Biological, Health and Sports Science delivers three CORU-approved programmes in Medical Science: the BSc in Medical Science (TU867), Higher Diploma in Medical Science full-time (TU888), and the Higher Diploma in Medical Science part-time (TU088). For the part-time students, the School committed to a limited number of days on campus, meaning that some lectures needed to be made available asynchronously. In the past, this meant double delivery of the lectures (one time for TU867/TU888 in-person, and one time recorded for TU088). This had obvious resource implications and meant that the student groups did not have a uniform experience.

Prenatal Substance Exposure And Positive Developmental Delay Screening Among Patients In Foster Care, Lauren Malthaner, Jill Mcleigh, Gregory Knell, Katelyn Jetelina, Folefac Atem, Sarah Messiah

Behavioral Health/Developmental Delay

Prenatal substance exposure (PSE) is a known risk factor for negative birth outcomes and long-term health outcomes like neurodevelopmental problems. Children in foster care have increased exposure to PSE and higher proportions of developmental delay compared with the general population. It is unclear whether differences still exist among developmental delay screening among children in foster care with and without PSE.

For questions about this study or others, please email [email protected]

childrens.com/fostercare

Colorectal Adenosquamous Carcinoma: Clinicopathologic Analysis Of Two Large Cohorts And Literature Review Confirm Poor Prognosis And Reveal Prognostic Aspects, Raul S Gonzalez, Rachel K Horton, Xuchen Zhang, Rondell P Graham, Teri A Longacre, Anupamjit Mehrotra, Daniela S Allende, Kelsey E Mchugh, Jinru Shia, Maria Westerhoff, Amitabh Srivastava, Wei Chen, Jennifer Vazzano, Paul E Swanson, Deyali Chatterjee, Hassam Cheema, Changqing Ma, Rifat Mannan, Runjan Chetty, Klaudia M Nowak, Stefano Serra, Diana Agostini-Vulaj, Rossana Kazemimood, Patrick Henn, Sanjay Kakar, Won-Tak Choi, Oyedele Adeyi, Sarah M Jenkins, Iris D Nagtegaal

Faculty, Staff and Student Publications

Aims: We compiled two cohorts of colorectal adenosquamous carcinoma (ASC) to describe its histologic and molecular aspects using modern parameters to compare them with literature reports using meta-analysis of cohorts and individual case series.

Methods and results: We identified 53 colorectal ASC from 19 North American academic medical centres, in addition to national database reports on 94 Dutch cases. We analysed available clinical, histologic, and immunohistochemical features and patient outcome. ASC comprised 0.02% of colorectal cancers in the Dutch database. The median cohort patient ages at resection were 65 and 69 years (North American and Dutch cohorts, respectively), with a …

Oviposition-Deterrent And Repellent Effects Of Synthetic Plant-Derived Compounds On The Pulse Beetle, Callosobruchus Chinensis (Coleoptera: Chrysomelidae: Bruchinae), Akki Suma, M Rajadurai, Ac Lokesh, Mb Anusha, S Krishna Kumar

The Philippine Agricultural Scientist

The pulse beetle, Callosobruchus chinensis (Linnaeus, 1758), is a major stored pest of pulses (Fabaceae) in India. While effective control of this widespread and destructive insect pest is essential, continuous insecticide use poses environmental concerns, thereby necessitating alternative, eco-friendly control methods. This study evaluated the oviposition-deterrent effects of 7 synthetic compounds (linalool, guaiene, citral, estragole, 4-nonanone, alloaromadendrene, and citronellal) on C. chinensis. Linalool showed the strongest suppression of egg-laying at higher concentrations, with the lowest egg count at 500 ppm compared to the control, followed by citral, citronellal, and guaiene. Linalool was also effective in suppressing egg hatching at …

Antimicrobial Activity In Auxin-Induced Formation Of In Vitro Culture- Derived Aloe Vera Roots, Eufrocinio Marfori, Bernadette Rapiz

The Philippine Agricultural Scientist

Aloe vera is a perennial, succulent plant which has been used in folk medicine for wound-healing, as its roots have been reported to exhibit remarkable antimicrobial properties. However, collecting the roots is detrimental to plant growth and development. Hence, an alternative system of producing A. vera roots must be developed. Tissue culture is a potential tool to obtain A. vera root biomass, which can serve as raw materials for the large-scale production of antimicrobial compounds. In this study, individual shoots taken from the multiple shoot culture of A. vera were induced to form roots in MS medium supplemented with 1 …

A Review On The Cytogenetic Integrity Of Micropropagated Plants [Review Paper], Eliaza Alumbro Peniton Jr

The Philippine Agricultural Scientist

Cytogenetic stability is essential for the survival of micropropagated plants. While micropropagation allows rapid propagation of plants with desirable phenotypes, it may also produce genetic variations that are, at times, cytogenetically observable. Factors affecting these variations are not fully understood, and micropropagation protocols are optimized to produce genetically stable regenerants. The genetic stability of micropropagated plants is traditionally assessed by comparing the phenomorphological traits of the regenerants to the mother plant. However, genetic variation does not often result in obvious morphological changes. Therefore, molecular and cytogenetic markers are typically used to evaluate the genetic variations of regenerants. Moreover, analyzing plant …

Productivity Of Lowland Rice (Oryza Sativa L.) As Affected By The Integration Of Nutrio® Biofertilizer, Emil John Cabrera, Cathrene Amante, Virginia Padilla

The Philippine Agricultural Scientist

Recent developments in rice cultivation in the Philippines are integrating sustainable methods in production systems to boost productivity and safeguard environmental integrity. An example of this is the use of biofertilizers such as Nutrio^®, a microbial-based foliar fertilizer that promotes nitrogen fixation and the production of plant growth-promoting hormones. Nutrio^® has been tested for sugarcane and is being explored for rice cultivation applications to maximize its utilization and benefits. This study aimed to assess the effects of Nutrio^® biofertilizer on rice production in selected farms during the 2019 wet season and the 2020 dry season in …

Isolation And Enumeration Of Salmonella Enterica From Fresh Lettuce (Lactuca Sativa L.) Leaves And Its Susceptibility To Different Washing Protocols, Meinard Talplacido, Angella Melissa Carlos, Bryan Rey Oliveros, Ida Dalmacio

The Philippine Agricultural Scientist

Lettuce is one of the most consumed fresh produce items in the country, but it also serves as a vehicle for human pathogens, posing a risk of foodborne illness. This study used conventional microbiological and molecular analyses to obtain the concentration and prevalence of Salmonella enterica in fresh Green Ice and Iceberg lettuce leaves from selected supermarkets in Los Baños, Laguna, Philippines. The efficacy of different household washing procedures in reducing S. enterica on lettuce leaves was also investigated. Of the 19 composite Green Ice lettuce and 21 composite Iceberg lettuce samples tested, 5.26% and 4.76%, respectively, were contaminated with …

Sustainability Analysis Of Olive Production In Hatay Province, Turkey, Gülșen Keskin, Ahmet Duran Celik, Tugce Sarioglu

The Philippine Agricultural Scientist

Hatay Province, located in the Southern Mediterranean region of Turkey, contributes approximately 7% of the country’s olive production. This study assessed the sustainability of olive enterprises in the province by interviewing 100 producers across 5 districts. A total of 33 variables (10 economic, 14 social, 9 environmental) were identified and used to evaluate sustainability. Results showed that 76% of the enterprises were considered “fragile”, 14% were considered “good”, and 10% were considered “poor”, with the highest scores obtained for social sustainability (58%), and the lowest obtained for environmental sustainability (7%). Statistically significant relationships were also found between sustainability and the …

Effects Of Water Deficit Stress And Mycorrhiza, Azotobacter Chroococcum, And Azospirillum Lipoferum Biofertilizers On Yield And Morphological Traits Of Wheat (Triticum Aestivum L.) Cultivars, Mehdi Rashnou, Farshid Aref, Bahram Amiri, Masoud Rafiee, Mahdi Zare

The Philippine Agricultural Scientist

Crop production in various parts of Iran faces significant constraints due to insufficient water availability, which is a major challenge to agricultural productivity. To study the effects of water deficit stress on shoot and root growth characteristics and seed yield of different wheat (Triticum aestivum L.) cultivars, an experiment was conducted using a randomized complete block design with a split-plot arrangement and 3 replications. The main factor was irrigation treatments (full irrigation during the growing season [S1], water withholding after flowering [S2], and water withholding after grain filling at the milk stage [S3]). The secondary factors were wheat cultivars …

Growth And Survival Of Silver Therapon (Leiopotherapon Plumbeus [Kner, 1864]) Larvae Fed With Artemia Franciscana Enriched With Isolated Endogenous Probiotic Bacteria, John Carlo Unido, Precious Dee Tolentino, Christian Paul Dela Cruz, Carmela Jhoy Dy, Honey Grace Samonte

The Philippine Agricultural Scientist

This study aimed to isolate, characterize, and identify endogenous lactic acid bacteria (LAB) from the gut of silver therapon (Leiopotherapon plumbeus) and to evaluate their potential as probiotics by enriching live food organisms, specifically brine shrimp (Artemia franciscana), and feeding them to L. plumbeus larvae. Three unknown bacterial isolates were screened and characterized as catalase-negative, Gram-positive, rod-shaped bacteria that showed tolerance to pH and bile, growth at temperatures of 30 and 40 °C, and inhibitory activity against pathogenic bacteria in vitro. The selected isolate was then confirmed as Lactobacillus sp. through partial sequencing of its 16S …

Increasing Soil Respiration In A Northern Hardwood Forest Indicates Symptoms Of A Changing Carbon Cycle, Angela R. Possinger, Charles T. Driscoll, Mark B. Green, Timothy J. Fahey, Chris E. Johnson, Mary Margaret K. Koppers, Lisa D. Martel, Jennifer L. Morse, Pamela H. Templer, Angelina M. Uribe, Geoffrey F. Wilson, Peter M. Groffman

Environmental Science and Management Faculty Publications and Presentations

Soil carbon dioxide (CO2) flux, or soil respiration, is a critical control on net ecosystem carbon (C) balance. Using long-term (2002-2020) measurements at the Hubbard Brook Experimental Forest (New Hampshire, U.S.), we show that soil respiration rates have notably increased since ~2015. In 2020, cumulative summer respiration flux was approximately 90% higher than the average summer flux over the 2002–2015 period. The increase in soil respiration cannot be explained directly by temperature or pH change alone. We also found that heterotrophic microbial C mineralization and microbial biomass C have also increased rapidly since ~2015, pointing towards an increase in the …

The Right Answer For The Wrong Reason: Preservice Science And Mathematics Teacher Preferences And Explanations Of Inquiry-Based Teaching, Elizabeth R. Goldberg, Taylor K. Darwin

School of Integrative Biological & Chemical Sciences Faculty Publications

Inquiry in science and mathematics education has a long and established history within the student-centered teaching movement because it can positively impact student learning, retention, and engagement. Yet few teachers have embraced these practices in the classroom. Potential reasons include misalignment of teachers’ attitudes about inquiry and a lack of understanding of what inquiry is and how to implement it in the classroom. This mixed-methods study compares these claims by examining preservice teachers’ attitudes and knowledge about inquiry-based teaching. Eighty-seven discussion posts were analyzed on preservice science and math teachers’ preferences for inquiry-based versus teacher-centered instruction at the beginning and …