Digital Commons Network^™

Review Of Nest Records Of Nebraska Birds By Wayne J. Mollhoff, W. Ross Silcock

Nebraska Bird Review

This book summarizes a lifetime of investigation of Nebraska’s breeding birds by Wayne Mollhoff. Even though I say the book summarizes a lifetime of investigation, I would not be surprised if Wayne resurfaces in a few years with a follow-up of some sort, intrepid investigator that he is. Over the years Wayne has spent innumerable days in the field climbing trees in full forestry gear, wading and kayaking marshes and rivers, hiking over prairies, and bushwhacking through dense forests (there are still a few in Nebraska). But this isn’t the totality of Wayne’s talents; he is a determined researcher with …

News From The Bioconductor Project, Bioconductor Core Team

The R Journal

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor 3.14 was released on 27 October, 2021. It is compatible with R 4.1.0 and consists of 2083 software packages, 408 experiment data packages, 904 up-to-date annotation packages, and 29 workflows.

Volume Approximation And Sampling For Convex Polytopes In R, Apostolos Chalkis, Vissarion Fisikopoulos

The R Journal

Sampling from high-dimensional distributions and volume approximation of convex bodies are fundamental operations that appear in optimization, finance, engineering, artificial intelligence, and machine learning. In this paper, we present volesti, an R package that provides efficient, scalable algorithms for volume estimation, uniform, and Gaussian sampling from convex polytopes. volesti scales to hundreds of dimensions, handles efficiently three different types of polyhedra and provides non existing sampling routines to R. We demonstrate the power of volesti by solving several challenging problems using the R language

Volesti: Volume Approximation And Sampling For Convex Polytopes In R, Apostolos Chalkis, Vissarion Fisikopoulos

The R Journal

Sampling from high-dimensional distributions and volume approximation of convex bodies are fundamental operations that appear in optimization, finance, engineering, artificial intelligence, and machine learning. In this paper, we present volesti, an R package that provides efficient, scalable algorithms for volume estimation, uniform, and Gaussian sampling from convex polytopes. volesti scales to hundreds of dimensions, handles efficiently three different types of polyhedra and provides non existing sampling routines to R. We demonstrate the power of volesti by solving several challenging problems using the R language.

G2f As A Novel Tool To Find And Fill Gaps In Metabolic Networks, Daniel Osorio, Kelly Botero, Andrés Pinzón Velasco, Nicolás Mendoza-Mejía, Felipe Rojas-Rodríguez, George Barreto, Janneth González

The R Journal

During the building of a genome-scale metabolic model, there are several dead-end metabolites and substrates which cannot be imported, produced, nor used by any reaction incorporated in the network. The presence of these dead-end metabolites can block out the net flux of the objective function when it is evaluated through Flux Balance Analysis (FBA), and when it is not blocked, bias in the biological conclusions increase. In this aspect, the refinement to restore the connectivity of the network can be carried out manually or using computational algorithms. The g2f package was designed as a tool to find the gaps from …

The R Quest: From Users To Developers, Simon Urbanek

The R Journal

R is not a programming language, and this produces the inherent dichotomy between analytics and software engineering. With the emergence of data science, the opportunity exists to bridge this gap, especially through teaching practices.

Software Engineering And R Programming: A Call For Research, Melina Vidoni

The R Journal

Although R programming has been a part of research since its origins in the 1990s, few studies address scientific software development from a Software Engineering (SE) perspective. The past few years have seen unparalleled growth in the R community, and it is time to push the boundaries of SE research and R programming forwards. This paper discusses relevant studies that close this gap Additionally, it proposes a set of good practices derived from those findings aiming to act as a call-to-arms for both the R and RSE (Research SE) community to explore specific, interdisciplinary paths of research

Bcmixed: A Package For Median Inference On Longitudinal Data With The Box–Cox Transformation, Kazushi Maruo, Ryota Ishii, Yusuke Yamaguchi, Masahiko Gosho

The R Journal

This article illustrates the use of the bcmixed package and focuses on the two main functions: bcmarg and bcmmrm. The bcmarg function provides inference results for a marginal model of a mixed effect model using the Box–Cox transformation. The bcmmrm function provides model median inferences based on the mixed effect models for repeated measures analysis using the Box–Cox transformation for longitudinal randomized clinical trials. Using the bcmmrm function, analysis results with high power and high interpretability for treatment effects can be obtained for longitudinal randomized clinical trials with skewed outcomes. Further, the bcmixed package provides summarizing and visualization tools, which …

Survidm: An R Package For Inference And Prediction In An Illness-Death Model, Gustavo Soutinho, Marta Sestelo, Luís Meira-Machado

The R Journal

Multi-state models are a useful way of describing a process in which an individual moves through a number of finite states in continuous time. The illness-death model plays a central role in the theory and practice of these models, describing the dynamics of healthy subjects who may move to an intermediate "diseased" state before entering into a terminal absorbing state. In these models, one important goal is the modeling of transition rates which is usually done by studying the relationship between covariates and disease evolution. However, biomedical researchers are also interested in reporting other interpretable results in a simple and …

Analysis Of Corneal Data In R With The Rpaci Package, Darío Ramos-López, Ana D. Maldonado

The R Journal

In ophthalmology, the early detection of keratoconus is still a crucial problem. Placido disk corneal topographers are essential in clinical practice, and many indices for diagnosing corneal irregularities exist. The main goal of this work is to present the R package rPACI, providing several functions to handle and analyze corneal data. This package implements primary indices of corneal irregularity (based on geometrical properties) and compound indices built from the primary ones, either using a generalized linear model or as a Bayesian classifier using a hybrid Bayesian network and performing approximate inference. rPACI aims to make the analysis of corneal …

The Nebraska Bird Review, Volume 89 Number 4, December 2021

Nebraska Bird Review

Fall Field Report, August - November 2021 by W. Ross Silcock

Book Review: Nest Records of Nebraska Birds by Wayne J. Mollhoff Reviewed by W. Ross Silcock

Northern Saw-whet Owl Autumn Migration in Eastern Nebraska: Results from a Three-year Banding Study by Stephen J. Brenner and Joel G. Jorgensen

Mute Swan Observation at Gavins Point Dam Area, Cedar/Knox Co., Nebraska by Caleb Strand and Mark A. Brogie

Book Review: The Sandhill Crane State: A Naturalist's Guide to Nebraska by Paul Johnsgard, Reviewed by Ruth Stearns

Index to Volume 89

Subscription and Organization Information

Mute Swan Observation At Gavins Point Dam Area, Cedar/Knox Co., Nebraska, Caleb Strand, Mark A. Brogie

Nebraska Bird Review

The Nebraska Ornithologists’ Union Records Committee (NOURC) considers Mute Swan (Cygnus olor) to be Accidental in Nebraska (NOURC 2017) with only two accepted records. A review of Mute Swan status in the Midwest and Nebraska, how individual records in Nebraska are evaluated to determine wild provenance, and a review of Nebraska reports can be found in “The Mute Swan in Nebraska: History and Current Status” (Brogie et al. 2016).

The following is an account of the third NOURC accepted record for Mute Swan in Nebraska. On 11 June 2021 we observed two sub-adult Mute Swans on Lake Yankton, Cedar County, …

Fall Field Report, August-November 2021, W. Ross Silcock

Nebraska Bird Review

INTRODUCTION Recent years have seen increasing reports of birds lingering quite late, and this fall was no exception. Notable groups exhibiting tardy departures were shorebirds and vireos. Tardy shorebirds were record late Solitary Sandpipers, near-record late Dunlin, and late Long-billed Curlew, Ruddy Turnstone, Least and Semipalmated Sandpipers, Long-billed Dowitcher, and Wilson’s Phalarope. Among the vireos, all regular species were at least tardy; record late was a Red-eyed Vireo, a Warbling Vireo was record late for the Panhandle, and a Blue-headed Vireo was second latest on record. Record late was a Barn Swallow, and a Mountain Bluebird was record late in …

(R)-2,5-Dimethoxy-4-Iodoamphetamine [(R)-Doi] Influences Coping Strategies To An Escapable Social Stress, Kevin Thomas Krupp

Dissertations and Theses

Depressive mood disorders are a leading cause of disability worldwide and pharmacological treatments for these disorders are inadequate, requiring new compounds with greater efficacy be investigated. The etiology of depression is heterogeneous; however, it is well established that stress exposure, and the proinflammatory effects of stress have a major role. Psychedelic compounds have rapid and long-lasting anxiolytic and antidepressive effects in humans and animal models of stress induced affective behavior. However, it is not completely understood how these compounds produce such rapid effects. We investigated whether the psychedelic compound (R)-2,5-dimethoxy-4-iodoamphetamine [(R)-DOI], a selective 5-HT2A partial agonist with potent anti-inflammatory properties, …

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, S. Clayton, S. Dutkiewicz, T. A. Rynearson

Graduate School of Oceanography Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950–1970 and 2080–2100, we explored potential alterations to each group’s growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …

Why Microbicides For Women?, International Partnership For Microbicides

International Partnership for Microbicides (IPM)

No abstract provided.

Microbicide Overview, International Partnership For Microbicides

International Partnership for Microbicides (IPM)

No abstract provided.

Microbicides: Woman-Centered Hiv Prevention To Help End Aids By 2030, International Partnership For Microbicides

International Partnership for Microbicides (IPM)

No abstract provided.

Healthy Aging And Older Adults With Autism: A Scoping Review, Mary Kris Stringfellow

Social Work Theses - Archive

Spectrum Disorder (ASD) is a lifelong diagnosis. While numerous studies have examined the effects of this disorder throughout childhood, not many have considered older adulthood and the differences between the neurotypical population. Likewise there is an abundance of literature regarding healthy aging. Yet the literature is sparse regarding the intersections of older adulthood and ASD. The purpose of this scoping review was to examine the state of literature regarding older adults with ASD and healthy aging, utilizing the framework conceived by Arksey and O’Malley: identify the research question; identify the relevant studies, study selection; chart the data; and collate, summarize …

Gpu-Based Monte Carlo Applications In Radiation Medicine, Youfang Lai

Physics Dissertations - Archive

Radiation can be used to image tumor site or kill tumor cells noninvasively, playing an important role in tumor diagnosis and treatment. Because of the increasing burden that cancer brings to the society, there always exists the demand of improving imaging resolution and contrast and improving radiation conformity for therapy. This depends on not only the advances of techniques, but, probably more importantly, the accurate and efficient modelling of radiation transport, enabling research on proof-of-concept for new tech and more complicated physics and chemical process in a quantitative way. Monte Carlo (MC) simulation method has been extensively used in medical …

How Community Engagement And The Power Nine Impact Health, Lindsey Shelton, Lindsey V. Shelton

Honors College Theses

The Blue Zones are five different places around the world where people are proven to live healthier and longer lives. In these places, they all share 9 unique habits that are attributed to helping achieve these healthier lives called the Power Nine. In Calloway County, a barrier survey was conducted by five different Murray State departments to see what stopped the residents from achieving their healthiest lives. Community engagement was found to be an important aspect of the Power Nine and was analyzed to see how it can impact one's health.

Electronic And Magnetic Properties Of Metal Doped Silicon-Carbide Fullerene-Type Nanostructures, Hussain Jabreel Alathlawi

Physics Dissertations - Archive

Silicon carbide (SiC) is a technologically significant material. A recent report on the abundance of C60 fullerenes in interstellar space, along with the presence of SiC precursors, sparked interest in potentially similar SiC nanostructures. C60 and C70 fullerenes were found experimentally and are an exceptionally stable form of carbon. As Si and C have similar valence electron configurations, it has been long envisioned that Si and SiC could also form similar fullerene-type structures. In this dissertation, Si30C30 fullerene-derived clusters were studied from the first principles theory, starting from an ideal Si60 fullerene template with various arrangements of silicon and carbon …

The Cellular And Genetic Mechanisms Of Stress Response Pathways In Caribbean Coral, Bradford Austin Dimos

Biology Dissertations - Archive

Reef-building corals are in decline around the globe due to both the effects of increased ocean temperatures and the emergence of marine diseases which affect corals. These emerging issues threaten the continued persistence of reefs and the ecosystem which they form as the mechanisms which corals use to respond to stress remain poorly characterized, limiting the success of interventions aimed at reversing these declines. To address these issues my dissertation focused on uncovering the cellular and genetic mechanism utilized by Caribbean corals during periods of stress. Towards this aim my second chapter identified and characterized a mitochondrial stress response pathway …

Is It A Boy Or A Girl? Constructing A Gendered Identity For Our Companion Animals, Jennifer Ann Wellman

Sociology & Anthropology Theses - Archive

A qualitative study of the differences in how we gender our cats and our dogs. Fifty women between the ages of 18 and 50 were interviewed, who kept cats, dogs, or both cats and dogs. Differences were found in how naming cats, with cats being given less humanized gendered names. It was found that cats are treated more as an extension of the self while dogs were given more of a gendered identity of their own.

Institute Of Public Health Newsletter- Volume2, Issue4, Institute Of Public Health (Iph)

Institute of Public Health Newsletter (IPHNL) and Other Publications

No abstract provided.

Confidence Interval For The Mean Of A Beta Distribution, Sean Rangel

Electronic Theses and Dissertations

Statistical inference for the mean of a beta distribution has become increasingly popular in various fields of academic research. In this study, we developed a novel statistical model from likelihood-based techniques to evaluate various confidence interval techniques for the mean of a beta distribution. Simulation studies will be implemented to compare the performance of the confidence intervals. In addition to the development and study involving confidence intervals, we will also apply the confidence intervals to real biological data that was gathered by the Department of Biology at Stephen F. Austin State University and provide recommendations on the best practice.

Effects Of Varying Warmup Stimuli On Running Economy, Connor Bigenho

Electronic Theses and Dissertations

Purpose: The purpose of this study was to determine the effects of two potentiating warm-up stimuli (weighted-vest strides and plyometrics) on running economy (RE) over short (5-10 minutes) and longer durations (30+ minutes) of exercise in trained distance runners. Methods: Five recreationally trained male runners were recruited to participate in this study. Each trial consisted of a 10-min self-paced warm-up on the treadmill followed by baseline RE test and baseline leg-stiffness. This was immediately followed by one of two intervention warmup protocols. The protocols consisted of either a series of plyometric movements, 6 x 10-sec strides with a …

Characterization And Aerodynamics Of Synthesized Polymeric Nanofibers Via Electrospinning Process To Capture Pm10 And Pm2.5 From Air, Barra Abbood, Khalid Sukkar, Jenan Al-Najar

Journal of Applied Sciences and Nanotechnology

Air quality is an important factor for human breathing requirements. The presence of the particulate matter which is a mixture of solid particles and liquid droplets presence in atmosphere such as PM10 and PM2.5 in the indoor air leads to fatal problems for human health.  In the present investigation, two types of nanofilters (polyacrylonitrile PAN, 15wt.% and polyvinyl alcohol PVA 12wt.%) were synthesized using the electrospinning method. The polymeric solutions were prepared under high mixing conditions. The structural and morphological specifications of produced nanofibers were characterized using many measuring devices.  Also, airflow characteristics across the prepared nanofilter were evaluated by …

Combatting Mental Illness In Schools: Are Teachers Ready?, Deshonda Payton

Dissertations

If ever there was a time school districts, principals and teachers had to worry about providing a quality education for students, it is now, at the time of this writing. Due to the Nation's current state in dealing with a worldwide pandemic, the education system as a whole has suffered traumatically, both mentally and emotionally. No longer will teachers be solely responsible for providing students with the essentials necessary to be academically, emotionally, and socially successful in schools. Hundreds of thousands of students suffer from some form of mental illness within our schools. And, the teachers who service and support …

Adverse Effect Of Nitroxynil And Albendazole On Rabbits, Eman Elalfy, Azza Hassan, Magdy Amer

Mansoura Veterinary Medical Journal

Objective:The present study aims to investigate the possible adverse effects of the subcutaneous injection of nitroxynil and oral administration of albendazole in rabbits. Design:Randomized controlled experimental study. Animals: 18 New Zealand rabbits of 1.50 ± 0.5 kg body weight, were allocated randomly into three groups (n=6). Procedures: Group A served as control, the group B was treated with albendazole (20 mg /kg B. wt.) orally and the group C was treated with nitroxynil (10mg /kg B. wt.) subcutaneously. Blood samples were collected at 1st, 7th and 14th days post drugs administration for hematological and biochemical determination. In addition, histopathological examination …