Digital Commons Network^™

Furthering Ascidian Taxonomy Using Molecular Biology, Nicholas Gulnick

Electronic Theses and Dissertations

Ascidians are our closest invertebrate relatives and comprise nearly 3,000 species separated into three orders: Aplousobranchia (most speciose), Stolidobranchia, and Phlebobranchia (least speciose). Ascidians can be classified as either solitary or colonial organisms. Species delimitation using morphological characters alone has had varied results. Well known, widely distributed, morphological species have turned out to be catch all species comprised of several cryptic species. Molecular markers can help mitigate some of the issues presented by strictly using morphological observations, including resolving the status of cryptic species, and accessing the expert knowledge required to identify a species. By incorporating molecular markers and pairing …

Manipulation Of Cellular Proliferating Cell Nuclear Antigen (Pcna) During Herpes Simplex Virus Type 1 Infection, Jessica Packard, Jill A. Dembowski

Electronic Theses and Dissertations

Herpes simplex virus type 1 (HSV-1) is a double stranded DNA virus that replicates within the nucleus of host cells. Using accelerated native isolation of proteins on nascent DNA (aniPOND), cellular proteins were found to associate with HSV-1 replication forks. One host factor of interest is proliferating cell nuclear antigen (PCNA), the DNA sliding clamp that tethers DNA polymerases and DNA damage response proteins to replicating cellular DNA. Although HSV-1 encodes its own DNA polymerase processivity factor (UL42), PCNA plays a key role in HSV-1 infection. We used commercially available PCNA inhibitors and short hairpin RNAs (shRNA) to investigate how …

Structure-Function Relationships In Neurodegenerative And Infectious Diseases: Biophysical Characterization Of Rna Secondary Structures By Computational Techniques, Kendy Guarinoni

Electronic Theses and Dissertations

The research described in this dissertation focuses on the investigation of the structure and dynamics of regions of RNA implicated in two diseases: COVID-19 and amyotrophic lateral sclerosis/frontotemporal dementia (ALS/FTD). Both studies sought to create experimentally corroborated models that were used to characterize the structure and dynamics of the C9orf72 repeat expansion and the s2m region in coronaviruses, respectively and provided the foundation for future work. In our work involving the s2m region of SARS-CoV-2, the virus responsible for COVID-19, we determined that the homology modeling approach commonly used to derive atomistic structures when no coordinates are available yields a …

Partial Immunity To Mycoplasma Gallisepticum After An Initial Infection Is Long-Lasting And Reduces Transmission In Flocks Of Canaries, Madeline Sudnick

Graduate Theses and Dissertations

Pathology during a second infection can be influenced by immunity and an increase in resistance or tolerance of individuals. Population-level differences in the ability to maintain immunity can lead to contrasting survival outcomes between groups and determine how future outbreaks will spread. However, long term wildlife disease surveillance can be challenging due to lack of infrastructure and host-pathogen specific tests. Calculating disease transmission likelihood requires understanding individual-level heterogeneity in pathology and behavior, and there is limited knowledge in understanding how populations in different stages of an epidemic will transmit disease. In Chapter I, we aim to help fill a gap …

Modeling Enterococcus Cecorum Horizontal Transmission To Investigate The Impact Of Perinatal Exposure On Extraintestinal Colonization, Disease Presentation, And Performance In Young Broiler Chickens, James Y. Higuita Valle

Graduate Theses and Dissertations

Enterococcus cecorum (EC) has primarily been associated with osteomyelitis and lameness in older chickens. The recent emergence of pathogenic EC causing morbidity and mortality in young broiler chicken flocks requires further investigation. The purpose of this thesis was to develop a model to simulate horizontal transmission of virulent EC during the hatching phase in small scale hatchet cabinets. The model will be used to investigate novel pre- and post-hatch strategies to mitigate EC infections in young broiler chickens. The current thesis contains four chapters. Chapter I includes the thesis introduction. A literature review focusing on EC-associated disease in chickens, with …

Buprenorphine Prescribing Characteristics Following Relaxation Of X-Waiver Training Requirements., Paul J. Christine, Rouba A. Chahine, Simeon D. Kimmel, Nicole Mack, Christian Douglas, Thomas J. Stopka, Katherine Calver, Laura C. Fanucchi, Svetla Slavova, Michelle R. Lofwall, Daniel J. Feaster, Michael Lyons, Jerel M. Ezell, Marc R. Larochelle

Center on Drug and Alcohol Research Faculty Publications

IMPORTANCE: Local-level data are needed to understand whether the relaxation of X-waiver training requirements for prescribing buprenorphine in April 2021 translated to increased buprenorphine treatment.

OBJECTIVE: To assess whether relaxation of X-waiver training requirements was associated with changes in the number of clinicians waivered to and who prescribe buprenorphine for opioid use disorder and the number of patients receiving treatment.

DESIGN, SETTING, AND PARTICIPANTS: This serial cross-sectional study uses an interrupted time series analysis of 2020-2022 data from the HEALing Communities Study (HCS), a cluster-randomized, wait-list-controlled trial. Urban and rural communities in 4 states (Kentucky, Massachusetts, New York, and Ohio) …

The Use Of Fourier-Transformed Infrared Spectroscopy With An Infrared Biotyper To Establish Classifiers For Major Serogroups Of Moraxella Bovis Based On Spectral Profiles, Jordyn Bailey Schommer

Honors Program: Senior Projects (Public)

A classifier tool was created to identify major serogroups of Moraxella bovis based on spectral profiles collected from bacterial cells through the use of Fourier transformed infrared spectroscopy. M. bovis strains were selected from a group of previously sequenced and genotyped isolates, which provided the pilin sequence type for each isolate. The obtained spectroscopic profiles were analyzed through artificial neural networks to create a classifier tool that could identify the PilA type for unknown strains. Once a sufficient spectral library was obtained, the isolates were split into a training and a validation group, each containing spectra from isolates of five …

Does Early Life History Influence A Novel Biomarker For Stress In Dogs And Predict Their Attachment To Their Owners?, Kylie Hughes-Duvall

Psychology Theses, Dissertations, and Student Creative Activity

Previous research suggests dogs with adverse life experiences (e.g., abuse, neglect) have altered HPA-axis activity and attachment styles. Although research on stress biomarkers in dogs has primarily focused on the HPA-axis and cortisol, human research suggests the sympathoadrenal medullary (SAM) pathway is also altered by acute stress and associated with changes in salivary α-amylase. Though α-amylase has been identified in canine saliva, it has yet to be studied as a biomarker for acute stress. Furthermore, limited research exists on the influence of life adversity on dogs’ attachment styles. This study investigated salivary α-amylase as a biomarker of acute stress in …

Antimicrobial And Chemical Characterization Of Cold Atmospheric-Pressure Plasmas, Dalton Albert Miller

Boise State University Theses and Dissertations

Microbial contamination of food processing facilities is a major cause of human disease and economic loss. There are approximately 48,000,000 cases of foodborne illness in the United States annually, leading to 128,000 hospitalizations and 1,300 deaths. The total economic damages are estimated at $36 billion each year, including productive hours, medical expenses, and the disposal of contaminated foodstuffs. Current methods to reduce contamination on food processing surfaces utilize steam or concentrated chemicals (hydrogen peroxide, hypochlorite, strong acids, strong bases) that are hazardous to workers and required large volumes of water to remove prior to resuming contact with food. Ongoing outbreaks …

Women's Experience Of Cancer Treatment During Covid-19 On The Texas-Mexico Border, Kayla E. Castañeda

Nursing Theses and Dissertations

The COVID-19 pandemic exposed existing racial, ethnic, socioeconomic, geographic, and gender disparities in cancer care and highlighted the need for more research in understudied populations. No studies have elucidated the experience of women living on the Texas-Mexico border receiving cancer treatment during the pandemic. This study explored the lived experience of receiving cancer treatment during the COVID-19 pandemic in 2020 for women living on the Texas-Mexico border and identified participants' self-identified unmet needs while receiving cancer treatment during the COVID-19 pandemic on the Texas-Mexico border. Following IRB approval and informed consent, ten women living on the Texas-Mexico border who received …

Canine Parasites In Southern Nevada Urban Dog Parks: Paravec Study, Miklo Azrael A. Alcala

UNLV Theses, Dissertations, Professional Papers, and Capstones

While dogs are one of humans’ greatest companions, they also serve as hosts for a multitude of parasites. Urban dog parks serve as environments where the transmission of diseases is likely to occur. Exposure to infective agents, contained within the soil, intermediate hosts (e.g., rodents, rabbits), and feces, can directly affect the health of dogs and their owners. Other factors that can further influence canine health include age, previous diagnoses of parasites/diseases, and migration. Many dog owners visit dog parks to encourage socialization and exercise. Such activities are meant to improve health, but unawareness of microbiological organisms can lead to …

The Impact Of The Covid-19 Pandemic On Device-Associated Healthcare-Associated Infections In Nevada, Gabriela Bran

UNLV Theses, Dissertations, Professional Papers, and Capstones

Healthcare-associated infections or hospital-acquired infections (HAIs) have remained prevalent despite the growth of infection control programs in healthcare facilities and are a large cause of morbidity and mortality. Device-associated HAIs (DA-HAIs) make up a large portion of HAIs. The devices include central line-associated bloodstream infections (CLABSIs), catheter-associated urinary tract infections (CAUTIs), and ventilator-associated events (VAEs). DA-HAIs became a large concern during the COVID-19 pandemic as many healthcare facilities became overwhelmed by the influx of COVID-19 cases, illuminating the importance of studies to examine these changes. Therefore, this study aimed to evaluate how DA-HAI rates have changed during and after the …

The Development Of Environmental Dna (Edna) Sampling For Arbovirus Vector Surveillance In Southern Nevada, Katharine Brooke Major

UNLV Theses, Dissertations, Professional Papers, and Capstones

Vector-borne diseases account for 17% of all infectious diseases worldwide and are responsible for more than 700,000 deaths annually. Two-thirds of the global population are at risk of arthropod-borne RNA viruses (arboviruses), spread by mosquitoes, ticks, and sandflies, with these pathogens accounting for 37% of all emerging human diseases. Arboviruses are becoming increasingly important causes of neurological disease in the United States, presenting a significant public health problem. In the absence of available vaccines and efficacious treatment options, accurate, rapid, and cost-effective surveillance of arbovirus vectors is critical for monitoring species distribution and mitigating disease transmission risk. Currently, mosquito vector …

Application Of Machine Learning Algorithms In Healthcare, Dwaipayan Mukhopadhyay

UNLV Theses, Dissertations, Professional Papers, and Capstones

Machine Learning (ML) is a subset of artificial intelligence that has made substantial strides in predicting and identifying health emergencies, disease populations, and disease state and immune response, amongst a few fields of healthcare. Here we provide a brief overview of machine learning-based approaches and learning algorithms. Second, we discuss a general procedure of ML and review some studies presented in ML application for several healthcare fields. We also briefly discuss the risks and challenges of ML application to healthcare.This dissertation also consists of four different cases in healthcare where we have applied ML techniques on real life data sets. …

Mandibular Mayhem: An Uncommon Cause Of Facial Swelling, Kelci Butler, Kathryn Brady, Michael Tekippe

Advocate GME

No abstract provided.

Linking Physiology, Epidemiology, And Demography: Understanding How Lianas Outcompete Trees In A Changing World, Hannes De Deurwaerder, Matteo Detto, Marco Visser, Stefan A. Schnitzer, Stephen W. Pacala

Biological Sciences Faculty Research and Publications

Extending and safeguarding tropical forest ecosystems is critical for combating climate change and biodiversity loss. One of its constituents, lianas, is spreading and increasing in abundance on a global scale. This is particularly concerning as lianas negatively impact forests’ carbon fluxes, dynamics, and overall resilience, potentially exacerbating both crises. While possibly linked to climate-change-induced atmospheric CO₂ elevation and drought intensification, the reasons behind their increasing abundance remain elusive. Prior research shows distinct physiological differences between lianas and trees, but it is unclear whether these differences confer a demographic advantage to lianas with climate change. Guided by extensive datasets collected …

How Local Interactions Give Rise To Large-Scale Conformational Changes In Proteins: A Molecular Dynamics Study, Shadi A. Badiee

Graduate Theses and Dissertations

Proteins are dynamic entities that undergo conformational changes essential for their biological functions. These structural changes often correspond with chemical events such as lipid interactions or environmental changes like protonation or acidification. Understanding the complex relationship between these chemical perturbations and the resultant mechanical responses is crucial for elucidating protein mechanisms. This dissertation investigates the chemo-mechanical coupling in the conformational dynamics of the bacterial ABC transporter Sav1866 and the impact of protonation on the Influenza virus hemagglutinin HA0. Using molecular dynamics simulations, we explore the conformational landscapes of Sav1866 and HA0. Our study examines how varying lipid compositions affect the …

Barriers To Telemedicine: Factors Influencing The Adoption Of Telemedicine, Carleton T. Brown

All Dissertations

Telemedicine is a rapidly evolving health treatment capability that offers an efficient and cost-effective alternative to conventional medical care. Providing access to alternative medical treatment may mitigate the population’s stress on the medical infrastructure in the upcoming decades. This study investigated the factors influencing patient adoption of telemedicine, including patient experiences and economic considerations. A quantitative survey explored patient population’s intention to utilize telemedicine, focusing on factors influencing the patients’ decision-making processes. Analyzing the survey results, the researcher focused on five main variables: exposure to telemedicine, age, loss of income, trust in doctors, and time lost. The research findings offer …

Relation Between The Negative Cognitive Triad, Perceived Everyday Discrimination, Depressive Symptoms, And Tnf-A In Adolescents., Ashley Ann Marshall Dondanville

Electronic Theses and Dissertations

This study is based on Beck's cognitive stress-vulnerability model of depression and previous research on (a) the increased risk for severe illnesses associated with TNF-⍺ (i.e., an inflammatory cytokine), (b) the effect of perceived everyday discrimination (PED) on depressive symptoms and TNF-⍺, (c) the association between depressive symptoms and TNF-⍺, (d) and findings that the negative cognitive triad (i.e., negative views of the self, world, and future) serves as a partial mediator between PED and depressive symptoms. The purpose of this study is to integrate Beck’s model and these different research lines by inspecting the associations between the stressor PED …

Burma Refugees’ Migratory And Resettlement Experiences And Health Practices, Eunice E. Kim

Loma Linda University Electronic Theses, Dissertations & Projects

Many refugees from Burma (renamed Myanmar) resettled in the U.S. in recent years; however, they are largely unknown to the American public care system. This dissertation aimed to increase understanding of their unique existence and life trajectory and provide a groundwork to identify an effective way to assist their quest to secure health and well-being in their host communities. Guided by Max Weber's Interpretive Sociology and Ideal Type construct principles, this study investigated the Burma refugee’s particular sociodemographic characteristics, narratives of enduring refugee debilitating conditions across multiple contexts, and life adaptations. The sampled Burma refugees comprised 36 former and current …

Evolving Community Preparedness: Analysis Of United States Pandemic Health Disaster Readiness, Jessy Rugeyo

Theses and Dissertations

The COVID-19 pandemic has shown substantial gaps in counties' preparedness and response capacity across the United States. This study analyzes the relationship between county-level pandemic preparedness and confirmed COVID-19 cases using secondary data from the FEMA's National Household Survey (NHS) and county-level COVID-19 data from the CDC. The data show a negative relationship between preparedness levels and COVID-19 positive rates, highlighting the necessity of proactive readiness measures. Individual risk assessment, motivation for preparedness, and socioeconomic variables have a major influence on confirmed cases. Higher levels of education, income, and preparedness are associated with lower positive rates, emphasizing the importance of …

Antibacterial Efficacy Of 940 Nm Diode Laser Against Cariogenic Bacteria (Tooth Decay-Causing Bacteria), Noha M. Jameel, Hanan J. Taher

Baghdad Science Journal

Dental caries is an extremely prevalent infectious disease caused by gram-positive bacteria mainly streptococcus mutans which is considered the major etiological factor causing dental caries. In recent years, there has been an enormous increase in the use of laser technology in medicine and dentistry and it has been demonstrated to have a considerable antibacterial action with no harm to the oral tissues. The study goal was to assess a diode laser's effectiveness as an antibacterial agent against the bacterium species S. mutans at various doses. The study was performed on streptococcus mutans microorganism at 106 CFU/ml concentration which received irradiation …

Developing Neutrosophic Cubic Spherical Fuzzy Sets Along With Their Exponential Aggregation Operators For Decision-Making Problems, Monika Yadav, Rakesh Kumar Bajaj, Aman Sharma

Neutrosophic Sets and Systems

In this article, we have devised the notion of neutrosophic cubic spherical fuzzy sets (NCSFSs) for the first time and discussed their basic binary operations along with important properties. This proposition has been framed superimposing the existing notions of spherical neutrosophic set (SNS) as well as the interval-valued neutrosophic spherical fuzzy set (IVNSFS). This proposition computationally helps in handling incompatible situations where each element has been addressed by truth, indeterminacy, and false membership values. Next, some important exponential operational laws have been relationally established for NCSFSs, highlighting their significant properties. Furthermore, to address decision-making challenges in the NCSFS environment, we …

Optimization Of Mass Spectrometry-Based Methods For Low-Input And Spatial Proteomics, Andikan Jones Nwosu

Theses and Dissertations

Eukaryotic cells are highly heterogeneous. These cells are arranged into different compartments, carrying out separate functions and facilitating biological processes. Proteins are the effector biomolecules targeted to subcellular locations that help fulfill specific tasks in living organisms. Spatial proteomics can help unravel molecularly how protein abundance and localization are altered in cells, which is not feasible in traditional bulk-scale proteomics. To achieve this, our lab has developed a miniaturized sample processing platform called nanoPOTS, reduced separation columns' inner diameter to increase ionization efficiency and concentrate analytes for mass spectrometers and optimized data acquisition modes for increasing proteome coverage in spatial …

Poly(Adp-Ribose) Polymerase-1 Regulates Pyroptosis Independent Function Of Nlrp3 Inflammasome In Neutrophil Extracellular Trap Formation, Louis J Delinois, Atul Sharma, Ashwin K Ramesh, Laurel D Boatright, Qun Li, Rong Xu, Hongbo R Luo, Bibhuti B Mishra, Jyotika Sharma

Faculty, Staff and Student Publications

Neutrophil extracellular traps (NETs) function to control infectious agents as well as to propagate inflammatory response in a variety of disease conditions. DNA damage associated with chromatin decondensation and NACHT domain-leucine-rich repeat-and pyrin domain-containing protein 3 (NLRP3) inflammasome activation have emerged as crucial events in NET formation, but the link between the two processes is unknown. In this study, we demonstrate that poly(ADP-ribose) polymerase-1 (PARP-1), a key DNA repair enzyme, regulates NET formation triggered by NLRP3 inflammasome activation in neutrophils. Activation of mouse neutrophils with canonical NLRP3 stimulants LPS and nigericin induced NET formation, which was significantly abrogated by pharmacological …

Autophagic Signaling Promotes Systems-Wide Remodeling In Skeletal Muscle Upon Oncometabolic Stress By D2-Hg, Yaqi Gao, Kyoungmin Kim, Heidi Vitrac, Rebecca L Salazar, Benjamin D Gould, Daniel Soedkamp, Weston Spivia, Koen Raedschelders, An Q Dinh, Anna G Guzman, Lin Tan, Stavros Azinas, David J R Taylor, Walter Schiffer, Daniel Mcnavish, Helen B Burks, Roberta A Gottlieb, Philip L Lorenzi, Blake M Hanson, Jennifer E Van Eyk, Heinrich Taegtmeyer, Anja Karlstaedt

Faculty, Staff and Student Publications

OBJECTIVES: Cachexia is a metabolic disorder and comorbidity with cancer and heart failure. The syndrome impacts more than thirty million people worldwide, accounting for 20% of all cancer deaths. In acute myeloid leukemia, somatic mutations of the metabolic enzyme isocitrate dehydrogenase 1 and 2 cause the production of the oncometabolite D2-hydroxyglutarate (D2-HG). Increased production of D2-HG is associated with heart and skeletal muscle atrophy, but the mechanistic links between metabolic and proteomic remodeling remain poorly understood. Therefore, we assessed how oncometabolic stress by D2-HG activates autophagy and drives skeletal muscle loss.

METHODS: We quantified genomic, metabolomic, and proteomic changes in …

Addendum: A Small Molecule Produced By Lactobacillus Species Blocks Candida Albicans Filamentation By Inhibiting A Dyrk1-Family Kinase, Jessie Macalpine, Martin Daniel-Ivad, Zhongle Liu, Junko Yano, Nicole M. Revie, Robert T. Todd, Peter J. Stogios, Hiram Sanchez, Teresa R. O'Meara, Thomas A. Tompkins, Alexei Savchenko, Anna Selmecki, Amanda O. Veri, David R. Andes, Paul L. Fidel, Nicole Robbins, Justin Nodwell, Luke Whitesell, Leah E. Cowen

School of Dentistry Faculty Publications

No abstract provided.

Synthesis And Characterization Of Medicinally Privileged Aza Heterocycles, Nneoma James

Theses and Dissertations

Four-membered cyclic amides, commonly known as β-lactams, have played a crucial role in drug discovery research since its discovery by Alexander Fleming in 1928 from Penicillium notatum. The β-lactam antibiotics are broadly effective against several bacterial infections through acylating the transpeptidase involved in cross-linking peptides to form peptidoglycan or periplasmic murein, which is a fundamental constituent of the bacterial cell wall for both the gram-positive (ten or more layers) and gram-negative (one or two layers) bacteria. Although for more than eight decades, β-lactams have been recognized as antibiotics, later, other medicinal activities of β-lactam derivatives have been reported, including lowering …

The Expression Of Genes Tlr2 And Tlr10 In The Gastric Tissue Of Patients With Gastroduodenal Disorders Caused By Helicobacter Pylori, Samara Kadhim Mohammed, Marrib N. Rasheed, Basim Ahmed ِAsker

Baghdad Science Journal

The bacterium Helicobacter pylori (H. pylori) is the key etiological agent in gastritis, peptic ulcer, and gastric cancer disease. Toll-like receptors (TLRs) contribute to the innate immune response through pathogen-associated molecular patterns (PAMPs) derived from H. pylori and other microorganisms as well as damage-associated molecular patterns (DAMPs) derived from host cells, such as tumour cells, dead or dying cells, or products released from cells in response to signals such as hypoxia. The study involved gastric biopsies taken from 88 gastroduodenal disorder patients and 21 healthy individuals. The clinical diagnoses of these groups after endoscopy examination included gastritis, peptic ulcers, and …

Challenges The Sporting Industry Faced During Covid-19 On Fan Attendance: The National Football League, Tinika Hughes

Electronic Theses, Projects, and Dissertations

When COVID-19 struck, the world was in disarray for any sporting event. The Culminating Experience Project investigated the impact of COVID-19 on the National Football League (NFL). The research questions were: Q1: How were the NFL stadium attendances impacted before the COVID-19 closures (2016 – 2019)? Q2: How were the NFL stadium attendances impacted due to closures during the COVID-19 stadium closures (2019 – 2021)? Q3: How were the NFL stadiums impacted post-COVID-19 (2021 – 2023)? The data collected covers all 32 NFL teams from 2019 to 2023, including attendance rates on and off the field influencing factors.

The findings …