Digital Commons Network^™

Mathematical Modeling And Association Analysis Decipher The Impact Of The Gut Microbiome On Cancer Immunotherapy, Andreas G Hadjigeorgiou, Constantinos Harkos, Aditya K Mishra, Golnaz Morad, Sarah B Johnson, Nadim J Ajami, Jennifer A Wargo, Lance L Munn, Triantafyllos Stylianopoulos, Rakesh K Jain

Faculty, Staff and Student Publications

The gut microbiome has emerged as a key regulator of response to cancer immunotherapy. However, a better understanding of the underlying mechanisms by which the microbiome influences immunotherapy is needed to identify strategies to optimize outcomes. To this end, we developed a mathematical model to obtain insights into the effect of the microbiome on the immune system and immunotherapy response. This model was based on (i) gut microbiome data derived from preclinical studies, (ii) mathematical modeling of the antitumor immune response, (iii) association analysis of microbiome profiles with model-predicted immune profiles, and (iv) statistical models that correlate model parameters with …

Clinical, Tumor, And Product Features Associated With Outcomes After Axicabtagene Ciloleucel Therapy In Follicular Lymphoma, Soumya Poddar, Jiali Yan, Gayatri Tiwari, Darawan Rinchai, Justin Budka, Wangshu Zhang, Weixin Peng, Shruti Salunkhe, Madison Davis, Qinghua Song, Sara Beygi, Harry Miao, Mike Mattie, Rhine S Shen, Caron A Jacobson, Davide Bedognetti, Simone Filosto, Sattva S Neelapu

Faculty, Staff and Student Publications

Background: Axicabtagene ciloleucel (axi-cel), anti-CD19 chimeric antigen receptor (CAR) T cell therapy, demonstrated remarkable efficacy with manageable toxicity in relapsed/refractory indolent B cell lymphomas in the ZUMA-5 trial.

Methods:Here, we report associations of product attributes, serum biomarkers, clinical features, and tumor characteristics with outcome in 124 patients with follicular lymphoma (FL).

Results: In univariate and multivariate analyses, pretreatment inflammatory markers, including TNF-α and IL-12p40, as well as total metabolic tumor volume (TMTV), associated with disease progression. Conversely, T-naive–like product phenotype associated with improved outcome, particularly in patients with high TMTV. These covariates improved risk stratification when combined with the …

Contemporary Outcomes Of Octa-Nonagenarians With Newly Diagnosed Acute Myeloid Leukemia, Jayastu Senapati, Hagop M Kantarjian, Tapan M Kadia, Jeannot Kekedjian, Gautam Borthakur, Naval Daver, Courtney D Dinardo, Elias Jabbour, Prithviraj Bose, Nicholas J Short, Musa Yilmaz, Nitin Jain, Naveen Pemmaraju, Hussein A Abbas, Ghayas C Issa, Abhishek Maiti, Guillermo Montalban Bravo, Indraneel Deshmukh, Elizabeth Shpall, Partow Kebriaei, Uday Popat, Sanam Loghavi, Beenu Thakral, Guilin Tang, Fadi G Haddad, Yesid Alvarado, Guillermo Garcia Manero, Farhad Ravandi

Faculty, Staff and Student Publications

Background: Octa-nonagenarians with acute myeloid leukemia (AML) represent a high-risk group due to frequently poor performance status, adverse genomics (e.g., TP53 mutations, complex karyotype), a high incidence of secondary AML, and inability to undergo an allogeneic stem cell transplantation. Evaluating their outcomes with modern treatment approaches is important.

Methods: This retrospective study analyzed outcomes of patients ≥80 years old with newly diagnosed AML treated at our center from 2013-2023.

Results: A total of 289 patients (median age, 83 years; range, 80-95 years) were included. Venetoclax containing low-intensity therapy was administered to 107 patients (37.0%). AML subtypes included de novo (123, …

The Experience Of Posttraumatic Growth For Atheists, Savannah Miller

Doctoral Dissertations

Background - This study aimed to understand how atheists manage to make meaning and find growth after experiencing trauma. Posttraumatic Growth is a well documented point of research across qualitative and quantitative domains, and this project aimed to add meaningful findings to that research body. Atheists, however, are an understudied population, especially as it relates to their subjective experience of trauma and posttraumatic growth.

Methods - This study aimed to investigate the experience of posttraumatic growth for atheistindividuals. Semi-structured interviews adhering to the tenets of interpretive phenomenological analysis were conducted then transcribed, coded, and analyzed. Themes and subthemes emerged and …

Biological Control Mitigates Spread Of Vector-Borne Plant Pathogens, Kris A.G. Wyckhuys, Yi Zou, David W. Crowder, Evie Adriani, Annabelle B. Albaytar, Marie Joy B. Beltran, Ibtissem Ben Fekih, Carolina Camargo-Gil, Filomena C. Filomena, Lizette Cicero, Yelitza C. Colmenarez, Claudia M. Cuellar-Palacios, Thomas Dubois, Sanford D. Eigenbrode, Frederic Francis, Alberto Fereres, Khalid Haddi, Fathiya M. Khamis, Cécile Le Lann, Anne Le Ralec, Lorena Lopez, Baoqian Lyu, James Montoya-Lerma, Karen Muñoz-Cardenas, Ihsan Nurkomar, Paola A. Palmeros-Suarez, Jermaine D. Perier, Ricardo Ramírez-Romero

All Peer-Reviewed Publications

Diseases caused by vector-borne plant pathogens cause adverse impacts on yield resilience, food security, and farmer livelihoods, which are bound to aggravate under global change. Biological control is routinely discounted as a mitigation strategy for plant diseases, partially due to scarce and inconclusive empirical support. Here, using curated field survey data for 58 persistently or semi-persistently transmitted pathogens, we employ a multi-method approach to assess the role of resident (i.e., naturally occurring) biological control agents in these pathosystems. Our meta-analyses show how in planta pathogen incidence is strongly affected by vector abundance and infectivity. Meanwhile, biological control agent density negatively …

Role Of Immunosuppressive Jnk Pathway In The Tumor Microenvironment Among Tnbc Subtypes In Ibcsg Trial 22–00, Andrea Joaquin Garcia, Takashi Semba, Mattia Rediti, Daniel J Mcgrail, Xuemei Xie, Xiaoping Wang, Dileep R Rampa, David Venet, Laurence Buisseret, Samira Majjaj, Roswitha Kammler, Marco Colleoni, Sherene Loi, Giuseppe Viale, Meredith M Regan, Françoise Rothé, Christos Sotiriou, Naoto T Ueno

Faculty, Staff and Student Publications

Phosphorylation of the JNK (pJNK) protein promotes an immunosuppressive tumor microenvironment (TME), enhancing aggressiveness in inflammatory triple-negative breast cancer (TNBC). This study evaluated the role of JNK signaling using a gene signature. RNA sequencing was performed on 347 TNBC tumors from the phase 3 International Breast Cancer Study Group (IBCSG) 22-00 trial, which evaluated adjuvant low-dose cyclophosphamide and methotrexate (CM). Immune-related tumors were identified by TNBC subtype or tumor-infiltrating lymphocytes (TILs). Associations between JNK and outcomes were analyzed using Cox models. Low pJNK levels were associated with better disease-free survival (DFS) in immune-related tumors. These tumors also had lower Treg …

What Are The Predictors Of Malignancy In Inflammatory Bowel Disease?, Zülal İstemi̇han, Bi̇lger Çavuş, Ali̇ Emre Bardak, Ayşe Merve Kirkoğlu, Cansu Kiziltaş, Rüveyda Si̇lay, İbrahi̇m Volkan Şenkal, Zi̇ya İmanov, Kenan Nuri̇yev, Aynure Rüstemzade, Sezen Genç, Mi̇ne Güllüoğlu, Asli Çi̇fci̇başi Örmeci̇, Kadi̇r Demi̇r, Fati̇h Beşişik, Sabahatti̇n Kaymakoğlu, Fi̇li̇z Akyüz

Turkish Journal of Medical Sciences

Background/aimː This study aims to investigate the prevalence of malignancy in patients with inflammatory bowel disease (IBD) followed up in a tertiary reference center.

Materials and methodsː IBD patients with at least 6 months of follow-up from the gastroenterology clinic between 2000 and 2022 wereevaluated retrospectively in a tertiary center. Patient information was obtained from the patient registration system.

Resultsː There were 697 patients in the study, 320 (45.9%) of these were female. The mean age of the patients at IBD diagnosis was 33.4± 13.1 years. The mean follow-up time was 93.1 ± 64.8 (median 84, IQR (25–75) (36–144)) months. …

Different Local Anesthetic Volumes In Pericapsular Nerve Group Block For Hip Fracture Patients, Yusuf Özgüner, Savaş Altinsoy, Gökçen Kültüroğlu, Sevda Gökçe Gürpinar, Derya Özkan, Jüli̇de Ergi̇l, Erbi̇l Aydin

Turkish Journal of Medical Sciences

Background/aim: The pericapsular nerve group (PENG) block is an effective method for pain management in patients with hip fractures. In our study, we compared three different local anesthetic volumes of the PENG block in patients who underwent surgery for hip fracture.Materials and methodsː Patients who underwent surgery with spinal anesthesia for intertrochanteric femur fractures (60 patients) were divided into three groups based on the volume of local anesthetic administered: Group 1 (20 mL), Group 2 (30 mL), and Group 3 (40 mL). Postoperative patient-controlled analgesia was initiated. Postoperative tramadol consumption, rest and movement pain scores, and the duration of motor …

Factors Affecting Extremity Fracture Risk In Children With Attention Deficit Hyperactivity Disorder, Yüksel Sümeyra Naralan, Esra Demi̇rel

Turkish Journal of Medical Sciences

Background/aim: Attention-Deficit/Hyperactivity Disorder (ADHD) is increasingly recognized not only for its behavioural and cognitive challenges but also for its potential implications in physical health, particularly injury risk. This study aimed to investigate the incidence of extremity fractures among children and adolescents diagnosed with ADHD and to evaluate the influence of demographic, clinical, and pharmacological variables—including ADHD subtypes and medication types—on fracture risk

Materials and Methods: This retrospective cross-sectional study included 754 children and adolescents aged 6–18 years who were diagnosed with ADHD according to DSM-5 criteria. Data were collected from electronic health records at a tertiary referral hospital. Variables …

Blood Group Profile Of Türkiye With Regional And Demographic Differences: A 23-Year Retrospective Study, Levent Sağdur, Azi̇z Karaca, Mustafa Nuri̇ Günçikan, Mustafa Yilmaz, Kerem Kinik

Turkish Journal of Medical Sciences

Background/aim: This study aims to comprehensively analyze the distribution of ABO and Rh blood groups, as well as demographic characteristics and regional variations, using data from 9.5 million blood donors across Türkiye.

Materials and methods: In this multicenter, retrospective, cross-sectional study, data were collected from 9,587,592 healthy, voluntary donors who donated to the Turkish Red Crescent between 1998 and 2021. Donors met the criteria of being 18–70 years old, weighing over 50 kg, with hemoglobin levels above 13.5 g/dL for male and 12.5 g/dL for female. The data were evaluated based on age, gender, education level, and geographic region.

Results: …

Evaluation Of Teachers' Knowledge And Awareness About Autism Spectrum Disorder, Hami̇t Harun Bağci, Abi̇de Aksungur, Gülsüm Öztürk Emi̇ral, Erhan Şi̇mşek

Turkish Journal of Medical Sciences

Background/aim: Teachers play an essential role in the early identification of autism spectrum disorder (ASD) and associated difficulties in children. Increasing teachers’ knowledge of ASD can be helpful in identifying these children and making the necessary referrals. This study aimed to assess teachers’ knowledge and awareness of ASD and the factors affecting them.

Materials and methods: This is a cross-sectional study conducted among school counsellors. A total of 171 school counsellors were contacted; school visits were arranged by prior appointment, and the purpose of the study was explained. Data were collected using a questionnaire prepared by the researchers and the …

Comparison Of Novel Diard-Hbv Dna Qpcr Kit With The Artus Hbv Qs-Rgq Kit For Quantification Of Hbv Dna In Clinical Samples, Ülker Çuhaci, Hande Toptan, Bengül Durmaz, Mehmet Köroğlu, Riza Durmaz

Turkish Journal of Medical Sciences

Background/aim: Hepatitis B virus (HBV) leads to widespread chronic infections that may result in long-term complications such as cirrhosis and hepatocellular carcinoma. The use of sensitive molecular methods for HBV DNA quantitation has provided significant contributions for diagnosis and monitoring of disease. The current study aimed to evaluate the diagnostic performances of a novel DiaRD HBV qPCR kit (novel kit) in comparison with the artus HBV QS-RGQ kit (comparator kit).

Materials and methods: A total of 288 plasma samples—105 HBV DNA-positive and 183 HBV DNA-negative—were tested using both kits. The diagnostic and quantitative results of the novel kit were compared …

Sinapic Acid Alleviates Renal Ischemia-Reperfusion Injury By Regulating Oxidative Stress, Apoptosis, And Inflammation, Mustafa Can Güler, Fazi̇le Nur Eki̇nci̇ Akdemi̇r, Ersen Eraslan, Ayhan Tanyeli̇, Derya Güzel Erdoğan, Behzat Tebri̇zi̇

Turkish Journal of Medical Sciences

Background/aim: Acute kidney injury (AKI) is a major clinical issue, frequently resulting from ischemia-reperfusion (I/R) injury. Sinapic acid (SA), a natural phenolic molecule included in numerous plant-based foods, exhibits antiapoptotic, antioxidant, and antiinflammatory properties. This study aimed to investigate the renoprotective effects of SA in an I/R-induced acute kidney injury (AKI) model.

Materials and methods: Sprague–Dawley male rats (n = 32) were randomly assigned to four groups: sham, I/R, SA 20 mg/kg, and SA 40 mg/kg. SA was administered intraperitoneally before reperfusion. Renal tissues were examined using biochemical, histopathological, and immunohistochemical methods, focusing on oxidative stress, cytokine expression, and apoptosis …

Consensus Paper On Candida Auris By Türkiye Ekmud, Thsk Of Ministry Of Health Of The Republic Of Türkiye, Klimud, Tmc, Tard, Tybd And Id-Iri, Canan Ağalar, Hakan Erdem, Yasemi̇n Çağ, Bi̇lgi̇n Arda, Recep Balik, Ali̇ye Baştuğ, Burcu Dalyan-Ci̇lo, Nuretti̇n Erben, Esma Eryilmaz-Eren, Gülşen İskender, Ayşe Kalkanci, Ni̇lgün Karabiçak, Zeli̇ha Koçak-Tufan, Emi̇ne Parlak, Nagehan Di̇dem Sari, Murat Sayin, Seni̇ha Şenbayrak, Recep Teki̇n, Ayşegül Ulu-Kiliç, Tuğhan Utku, Ömrüm Uzun, Göknur Yapar Toros, Sevtap Arikan-Akdağli

Turkish Journal of Medical Sciences

Candida auris is an emerging fungal pathogen that has become a critical global health concern due to its high antifungal resistance and potential to cause nosocomial outbreaks. Since its initial identification in Japan in 2009, C. auris has spread rapidly, posing significant treatment challenges across various healthcare settings worldwide. The biofilm formation ability of C. auris enhances its resilience against disinfectants and antifungal agents, complicating infection control in healthcare environments. This consensus report, developed with the collaboration of several Turkish medical specialty societies, including the Turkish Society of Infectious Diseases and Clinical Microbiology Specialty (EKMUD), the Turkish Society of Anesthesiology …

The Impact Of Alternatives To Incarceration And The Motherhood Identity On Mothers And Their Children: A Qualitative Study, Chloe Blau

Seton Hall University Dissertations and Theses (ETDs)

The U.S. prison system population increasingly includes women, a significant proportion of whom are mothers, often incarcerated for non-violent crimes. Some research suggests that alternative to incarceration (ATI) programs can help these women to continue supporting their children while serving their sentences and receiving services that may decrease recidivism. However, few studies have explored the lived experiences of women in these programs. This dissertation investigates the impact of participating in ATI programs on mothers and their relationship to their motherhood identity, their ability to mother, and their relationship with their children. Using a qualitative approach to better understand how women …

A Thematic Analysis Of The Perceived Impact Of Nil Policy On Athletic Identity, Career Maturity, And Black Male Student-Athletes’ Experience Of Transitioning Away From Football, Jesse Merise

Seton Hall University Dissertations and Theses (ETDs)

In 2007 the NCAA launched the widely recognized slogan, “There are over 380,000 student-athletes, and most of us will go pro in something other than sports.” Today, that figure has risen to over 540,000 and continues grow. Among them, Black male student-athletes (BMSAs) comprise 40% of collegiate football participation across all three divisions, a notable increase from 36% in 2012. Since only a small percentage of college football players go on to play professionally, it means that a large number of Black student-athletes will eventually have to leave sports and pursue other career paths.

This study examined the perceived impact …

The Impact Of The Doctor-Patient Relationship In Bipoc Women Suffering From Benign Gynecological Conditions, Gabriela Baez

Seton Hall University Dissertations and Theses (ETDs)

This study sought to gain a better understanding of the impact of the doctor-patient relationship on BIPOC women with benign gynecological conditions. The current study explored how wellbeing is impacted in BIPOC cis-gender women with benign gynecological conditions by measuring the quality of the relationship. General racism experience was also explored as a moderator on the impact of doctor-patient relationship on wellbeing. A total of 169 participant responses were included in this study. Hierarchical regression analysis demonstrated that there was a significant relationship between gynecological conditions and wellbeing. In addition, there was a significant negative relationship between racism experience and …

The Influence Of Remote Instruction On Middle School Ell Students' New Jersey State Learning Assessment English Ela And Math Achievement, Marie Chezuette Dort

Seton Hall University Dissertations and Theses (ETDs)

This correlational study explained the influence of remote instruction on English Language Learner (ELL) students' middle school grades on the New Jersey Student Learning Assessment (NJSLA) achievement in English Language Arts (ELA) and Mathematics. This study focused on data collected in two separate school years and analyzed middle school grades with the ELL Subgroup. It indicated the correlation between remote instruction and ELL students' ELA and mathematical performance in the NJSLA Grades 6, 7, and 8. This study also included controlled variables, Grades 3, 4, and 5, from 2018-2019 and other student characteristics, the percentage of economically disadvantaged students and …

Sexual Intervention Self-Efficacy In Clinical And Counseling Psychology Doctoral Trainees: Examining Education, Family Sexual Communication, And Sex Positivity, Sara Aigen

Seton Hall University Dissertations and Theses (ETDs)

Sexual wellbeing is a critical yet often overlooked aspect of psychological health. Despite its significance, many psychologists report discomfort and low self-efficacy in addressing clients’ sexual concerns. The current study examined factors associated with sexual intervention self-efficacy among doctoral trainees in clinical and counseling psychology. Specifically, it investigated whether family communication about sex and didactic education in sexuality predicted sexual intervention self-efficacy and whether sex positivity moderated these relationships. A cross-sectional survey design was employed with 166 doctoral students enrolled in APA-accredited programs across the United States. Participants completed a demographic questionnaire and measures assessing family sexual communication, sex positivity, …

Parent/Stakeholder, Practitioner, And Teacher Perception Of Applied Behavior Analysis As Influenced By Social Media, Brittany Hahn

Seton Hall University Dissertations and Theses (ETDs)

The current study was conducted to investigate individuals’ perceptions of ABA as influenced by social media. A survey that included videos selected from TikTok, a social media platform, was provided to parents/stakeholders of children with Autism Spectrum Disorder (ASD), practitioners/employees of ABA (BCBAs, RBTs, etc.), and teachers. Participants were acquired using recruitment posts on TikTok and Facebook, through email, and by word-of-mouth/referral. 58 participants in total fully completed the survey. The survey was conducted using Qualtrics and included 32 questions and eight TikTok videos. The results showed that parents/stakeholders’, practitioners’, and teachers’ opinions of ABA were not influenced by the …

A Systematic Review To Assess The Use Of Peer Mediated Interventions For Children With Autism When Autistic Children Serve As Peer Instructors And Models, Corinne Boyce-Swem

Seton Hall University Dissertations and Theses (ETDs)

Abstract

Autism spectrum disorder is a neurodevelopmental disorder characterized by deficits in social communication, social interactions and restricted, repetitive and stereotyped patterns of behavior, interest or activities. These deficits hinder autistic children’s social and communicative skills. Peer-mediated interventions (PMIs) have been found effective in the development of communication, play and social skills in individuals with ASD. In PMIs typically developing children are trained to be peer models of socially acceptable behavior for children with ASD. This however may contrast with literature indicating that the most effective peer models are individuals who share similarities with the learner. The current study was …

Does The Literature Empirically Support The Use Of Behavior Analysis In The Treatment Of Sports Related Concussions: A Systemic Review, Kayla Mckoy

Seton Hall University Dissertations and Theses (ETDs)

Although the literature supports the use of applied behavior analytic (ABA) interventions in the treatment of traumatic and acquired brain injuries, the question remains as to whether or not ABA procedures are an effective treatment option specifically for TBI associated with sports related concussion (SRC). The purpose of the present study was to review the literature available on the use of ABA with individuals diagnosed with sport related TBI to determine if there is enough research to empirically support the use of behavior analysis in the treatment of sport related concussions. The PRISMA method for systematic reviews was used to …

Incidence Of And Risk Factors For Hyperoxemia Among Potentially Critically Ill Patients Treated In The Wards: A Retrospective Study, Mehmet Nuri̇ Yakar, Doğukan Şenberber, Ozan Balkabak, Nurgazy Shermatov, Kaan Köşker, Seli̇n Elden, Emel İbi̇şoğlu, Begüm Ergan, Volkan Hanci, Necati̇ Gökmen

Turkish Journal of Medical Sciences

Background/aim: The literature shows a link between hyperoxemia and poor outcomes, whereas this association remains unclear in hospital wards. This study aims to determine the incidence of hyperoxemia in hospital wards and its risk factors.

Materials and methods: Patients aged ≥ 18 years who underwent an evaluation by an intensivist between 1 January 2020 and 31 December 2020, while receiving treatment in hospital wards, were included in the study following ethics committee approval. Patients with hypoxemia (partial pressure of oxygen [PaO2] < 60 mmHg), a condition related to Coronavirus disease 2019, a hospital stay < 1 day, or missing data were excluded. Patients were divided into two groups: normoxemia (60 mmHg ≤ PaO2 < 120 mmHg) and hyperoxemia.

Results: The incidence of hyperoxemia was 42.2%. Patients with hyperoxemia had longer hospital stays and higher intensive care unit …

Evaluating Current Practices In Operative Nontechnical Skills Training And Feedback In General Surgery Residency: A Mixed Methods Approach, Madeline Cloonan

Theses & Dissertations

Background: Non-technical skills (NTS) are the interpersonal and cognitive abilities that are critical to accomplishing high-risk tasks. Deficiencies in NTS, including communication, teamwork, leadership, and decision-making, are linked to errors in the operating room. Structured training and feedback in NTS remain inconsistent and have not been integrated into daily training. This dissertation addresses this gap by evaluating current NTS training and feedback practices and developing a rubric to enhance the effectiveness of NTS feedback.

Methods: We conducted five complementary studies to assess current NTS training and feedback. The first was a systematic review aimed at identifying intraoperative NTS training interventions …

Colostrum Extracellular Vesicle Are Neuroprotective In The Mptp Intoxicated Mouse Model Of Parkinson's Disease, Samia Akter

Theses & Dissertations

Parkinson’s Disease (PD) is the second most common neurodegenerative disorder. Dopaminergic neuronal loss in the substantia nigra and the formation of Lewy bodies are the disease pathological hallmarks. We demonstrate that bovine colostrum extracellular vesicles (EVs) induce anti-inflammatory and neuroprotective activities during MPTP (methyl-4-phenyl-1,2,3,6-tetrahydropyridine) intoxication. Treatment these mice with colostrum EVs reduced the extent of activated microglia and neurodegenerative activities. RNA sequencing and transcriptomic analysis revealed a significant decrease in pro- inflammatory responses, as well as reduced recruitment and activation of immunocytes in affected brain tissues. Decreased expression of pro-inflammatory cytokines and chemokines, as well as suppressed canonical inflammasomes, was …

Study Of Peptide Amphiphiles As Antimicrobial Agents, Aramis J. Pereira

Theses & Dissertations

The global antimicrobial resistance (AMR) crisis presents a severe public health threat, with drug-resistant infections now the third leading cause of mortality worldwide. This escalating problem, driven by the rapid proliferation of multidrug-resistant organisms (MDROs) like the "ESKAPE" pathogens, severely limits treatment options and imposes substantial economic burdens. The crisis is further exacerbated by a limited pipeline of new antimicrobial agents, as most recently approved drugs are modifications of existing classes rather than novel compounds. Peptide amphiphiles (PAs) offer a promising alternative due to their membrane-targeting mechanism, which reduces the likelihood of resistance development. These molecules are amphiphilic and positively …

Harmful Effects Of The Interaction Between Microplastic Container, Aluminuim Foil And Hot Water On Some Physiological Parameters Using Pigeon Model, Faten S Mounce, Nadheerah F Neamah, Manal N Alhayder

Baghdad Science Journal

Due to common used of disposable food containers cuurrently.This study evaluated the toxicity resulted from the interaction between the boiling tap water, microplastic container , aluminuim foil with or without microwave radiation on some physiological and histological parameters in Pigeons. Forty pigeons were classified into four groups. The birds in group 1 drink tap water without boiling placed in the usual drinking bowl. The birds in group 2 received tap water in thermoplastics containers previously boiled in microwave oven for 5 minutes, whereas in group3, the birds drink boiled tap water that put in thermoplastics containers for 5 min and …

Quantification Of Bioactive Compounds In Coffea Arabica And Their Impact With Omega-3 Supplementation On Non-High-Density Lipoprotein Levels In Hyperlipidemia-Induced Rats, Sojoud M. Al-Zoubi, Shady H. Awwad, Reem A. Issa, Ahmad Q. Daraosheh, Talal Al-Qaisi, Husni Farah, Khaled W. Omari, Beisan A. Mohammad, Mumen Amer, Rula F. Khuzaie, Mahmoud S. Abu-Samak

Baghdad Science Journal

This study aims to evaluate the levels of coffee lipids, diterpenes, chlorogenic acid (CGA), and caffeine in coffee samples with different roasting levels. Additionally, it aims to assess the impact of coffee extracts with/without omega-3 supplementation on lipid profile parameters. Liquid-liquid and soxhlet extraction, and quantitation were performed using HPLC-DAD. Two groups of Wistar rats were used: non-hyperlipidemic and hyperlipidemic. Blood samples were collected before and after hyperlipidemia induction after six weeks. The lipid profile: total cholesterol (TC), low-density lipoprotein (LDL), high-density lipoprotein (HDL), triglyceride (TG), non-high-density lipoprotein (non-HDL), and total cholesterol-to-high-density lipoprotein ratio (TC/HDL) were determined. A positive correlation …

Estimation Of Paraoxonase-1 And Dipeptidyl Peptidase In Iraqi Prostatic Cancer With Hormones And Chemotherapy Drugs: A Cross-Sectional Study, Ammar H.Al-Qazzaz, Anwar F. Al-Taie

Baghdad Science Journal

Prostate cancer is a frequent masculine disease, especially when becoming older. Paraoxonase-1 (PON-1) is an enzyme present in the human body that plays an important function in preventing oxidative stress and inflammation. It is mostly linked to high-density lipoprotein (HDL). Dipeptidyl peptidase-4 (DPP-4) is an enzyme regulating blood sugar levels. It is found on many cells surfaces: immune cells, epithelial cells, and pancreatic cells. The aim of this cross-sectional study was to determine the biochemical role of PON-1 effect and DPP-4 enzymes with the anti-cancer ability of vitamin D. Research samples were collected from Iraqi prostate cancer patients (male aged …

Sox2 Regulates Foregut Squamous Epithelial Homeostasis And Is Lost During Barrett’S Esophagus Development, Ramon U Jin, Yuanwei Xu, T Mamie Lih, Yang-Zhe Huang, Toni M Nittolo, Blake E Sells, Olivia M Dres, Jean S Wang, Qing K Li, Hui Zhang, Jason C Mills

Faculty, Staff and Students Publications

Esophageal adenocarcinoma is increasingly prevalent and is thought to arise from Barrett's esophagus (BE), a metaplastic condition in which chronic acid and bile reflux transforms the esophageal squamous epithelium into a gastric-intestinal glandular mucosa. The molecular determinants driving this metaplasia are poorly understood. We developed a human BE organoid biobank that recapitulates BE's molecular heterogeneity. Bulk and single-cell transcriptomics, supported by patient tissue analysis, revealed that BE differentiation reflects a balance between SOX2 (foregut/esophageal) and CDX2 (hindgut/intestinal) transcription factors. Using squamous-specific inducible Sox2-KO (Krt5CreER/+ Sox2Δ/Δ ROSA26tdTomato/+) mice, we observed increased basal proliferation, reduced squamous differentiation, and expanded metaplastic glands at …