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Neural And Computational Approach To Understanding Environmental Modulation Of Behavioral Identity In Zebrafish, John W. Hageter

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms rely on behavior for survival. Animals engage in behaviors that allow for feeding, mating, exploring and navigating their environment among others. Necessary for these behaviors to develop are the environmental factors and underlying circuitry which make behavior possible. Specifically, how the environment guides underlying neural circuitry to develop unique facets or phenotypes of a larger behavior are key to understanding why unique behaviors exist. In this thesis, I build foundational evidence for determining these mechanisms through the use of the zebrafish local search behavior. This is a behavior that zebrafish employ following the loss of environmental illumination where they …

A Multiscale Ai Framework For Forest And Agriculture Health Monitoring: Drone-Based Object Recognition And Segmentation For Automated Ecological Assessment, Sruthi Keerthi Valicharla

Graduate Theses, Dissertations, and Problem Reports (ETD)

Forest and agricultural ecosystems are increasingly at risk due to invasive species, pests, and diseases, necessitating scalable, automated, and intelligent monitoring solutions. Traditional field based forest and agriculture health assessments are limited by cost, time, and spatial coverage. This dissertation presents a multiscale deep learning framework that automates forest and agriculture health monitoring using drone imagery and computer vision techniques. The system operates across three spatial levels: forest level, tree level, and leaf level, combining object detection, segmentation, and classification models to support large scale ecological assessment.

At the forest level, high-altitude drone imagery is processed using object detection and …

Microbial And Plant Biodiversity In Appalachian Agroecosystems And Their Implications For Soil Health, Kinsey Reed Close

Graduate Theses, Dissertations, and Problem Reports (ETD)

The sustainability of agricultural landscapes depends on understanding the complex interactions between plants, soil, and microbes. In Appalachia, a region shaped by complex terrain and long histories of human and ecological interaction, small family farms produce hay, livestock, and row crops. These agroecosystems, though often treated as “artificial” by many ecologists, have the potential to support both food production and biodiversity conservation if managed with an understanding of ecological complexity. This dissertation examines how plant and microbial diversity interact with soil and management to influence nutrient cycling, soil health, and long-term resilience in Appalachian agricultural systems. A literature review revealed …

Effects Of Environmental And Anthropogenic Gradients On Fish Beta Diversity In Central Appalachian Streams, Alanna Kaylee Lowther Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Understanding the environmental and spatial drivers of community composition is essential for conserving freshwater biodiversity. We examined how environmental gradients, land cover, and spatial structure influence fish beta diversity in wadeable streams across West Virginia, USA. We quantified total beta diversity and partitioned it into species replacement and richness difference components and used local contributions to beta diversity (LCBD) to identify compositionally unique sites. Community–environment relationships were evaluated with distance-based redundancy analysis (dbRDA), and a beta regression GLMM was used to test how elevation, slope, land cover, and stream order (factor) predicted LCBD while accounting for spatial structure (dbMEMs) and …

Using Advanced Machine Learning To Evaluate The Spatial And Temporal Patterns Of Human–Bear Interactions In Maryland, Usa, Katherine A. Kurth, Jonathan K. Trudeau

Human–Wildlife Interactions

American black bears (Ursus americanus) are highly adaptable to human-dominated areas, which can lead to interactions with humans. Managing these interactions is a priority for many wildlife agencies in North America. Climate-induced shortages in natural food can exacerbate human–bear interactions, as bears are driven to seek alternative food sources in human-dominated areas. However, few studies have investigated the impact of climate or weather on the frequency and severity of human–bear interactions. In Maryland, USA, no research has examined the anthropogenic or environmental factors contributing to human–bear interactions, even though reported interactions have consistently increased since the 1990s. Our …

Pygoscelis Penguins Prefer Different Oceanographic And Terrestrial Habitats During The Austral Summer, Katherine L. Gallagher, Rachel Herman, Katherine Walton, Michael S. Dinniman, Heather J. Lynch

OES Faculty Publications

Pygoscelis penguins interact with both terrestrial and marine environments, especially during the austral summer when they raise their chicks. Accessible ice-free ground spaces serve as locations for penguins to build colonies and successfully raise chicks while the surrounding marine environment serves as the foraging grounds for adult birds. Penguins must be able to navigate through the waters around their colonies to forage for Antarctic krill (Euphausia superba), their primary prey during the austral summer. Krill, whose distributions are driven partially by the surrounding physics and partially by their behaviors, must also be plentiful in the waters near the …

Long-Term Ichthyoplankton Monitoring Of The Moon River (Savannah, Ga) With A Focus On Climate Change, Bradley Cayson

College of Graduate Studies: Theses & Dissertations

The presence of healthy fish populations is a cornerstone of many important ecological mechanisms. These populations are supported by the recruitment of ichthyoplankton, or the egg and larval stages of fishes, as the primary determinant of population growth. Increases in average global water temperatures can alter the composition of fish communities and thus the offspring found in planktonic stages. I compared a large data set of ichthyoplankton surveys completed from 2009-2011 to a replicated six-month sampling period from May – November of 2024. Collection was conducted weekly to biweekly during night flood tides using a fixed suspension ichthyoplankton net (1mm …

Diversifying Ecology Education For Everyone Through More Inclusive, Interdisciplinary, And Accessible Teaching, Loren B. Byrne, Emily S. J. Rauschert, Vikki L. Rodgers, Gillian Bowser, Et Al.

Arts & Sciences Faculty Publications

Educating more students about ecology and its beneficial applications to societal issues is urgent yet challenging. To address this challenge, diversifying ecology education is a key way to make ecology more inclusive, accessible, and interdisciplinary for more people than ever. Advancing this goal requires ecology educators to develop a more expansive view of (1) how to engage more diverse undergraduate students in ecology courses, especially those from historically underrepresented groups and non-majors, (2) the interdisciplinarity of content in those courses, and (3) the learner-centered pedagogies used to engage students. We suggest ways that ecologists can advance “ecology education for everyone” …

Investigating The Effectiveness Of Best Management Practices In Reducing Fecal Bacteria In Narrow River, Rhode Island, Katherine Thompson

Open Access Master's Theses

Fecal bacterial contamination shapes how communities manage and use estuarine waters, with consequences for ecosystem health and public access. In Rhode Island's Narrow River, elevated concentrations of fecal coliforms and enterococci have restricted shellfishing for decades despite ongoing management efforts. From 2004 to 2018, local organizations implemented Best Management Practices (BMPs) to address water quality challenges, yet their effectiveness remains incompletely understood. This study analyzes three decades of monitoring data using linear regression, generalized additive models, and Before After Control Impact methods to evaluate BMP effectiveness and identify key drivers of contamination. Linear regression revealed spatially variable trends, with bacterial …

The Experiences Of Systemic Invalidation In Chronic Pain Care Among Socioeconomically Disadvantaged Individuals: An Interpretative Phenomenological Study, Claira Moro

School of Psychology Theses

This study explored the lived experiences of individuals from socioeconomically disadvantaged communities living with chronic pain and prescribed pain-relief medication. Using Interpretative Phenomenological Analysis, eight participants were recruited from a single primary care network in England. Two Group Experiential Themes were developed. This paper reports one: From dismissed to disengaged: the trauma of seeking help, with three sub-themes: (1) “Being fobbed off” – dismissal across healthcare and benefit systems; (2) “It just seemed horrible to me, to take it off me” – pain relief as withdrawn, stigmatised, or conditional; and (3) “Do I want to poke the bear?” – disengagement …

Children’S Outdoor Play Injuries: How Real Are Parental Concerns Of Danger In Outdoor Play?, Fiona Armstrong, David Gaul

Research Outputs: 2025-Present

Risky play can be defined as any play that is thrilling or exciting, involving risk of injury [Sandseter, E. B. H. (2007). Categorising risky play—How can we identify risk-taking in children's play? European Early Childhood Education Research Journal, 15(2), 237–252.]. Risky play has been associated with danger and increased risk of injury, yet there is limited evidence relating to the prevalence of injuries because of play, with existing data mainly related to home and sports-related injuries [Gilmartin, S., Barrett, M., Bennett, M., Begley, C., Ni Chroinin, C., O’Toole, P., & Blackburn, C. (2022). The effect of national public health measures …

Territory And Border Dynamics Among Small Pre-Hispanic Polities In Western Chiapas, Mexico, Antonio Martinez Tunon

Electronic Theses & Dissertations (2024 - present)

This dissertation examines the concept of territory in premodern polities, challenging modern assumptions that territory is a static or obsolete notion in the face of globalization. It critiques the conventional Westphalian model of state sovereignty, emphasizing that premodern political entities often exhibited flexible, overlapping territorial arrangements rather than fixed, linear boundaries. By analyzing territorial organization in premodern societies, this research explores the historical evolution of territoriality, identifying continuities and transformations over time.

Drawing from archaeology, anthropology, and historical geography, the research investigates how different societies have defined and maintained territorial control based on factors such as political authority, economic resources, …

The Relationship Between Food Insecurity And Low Birthweight Across Us Counties And Related Racial Disparities, Marissa A. Beldon, Shondra L. Clay, M. Courtney Hughes, Kathryn Mazurek

Faculty Articles, Papers, and Other Scholarship

Objective

To explore the relationship between low birthweight (LBW) and food insecurity across US counties and determine whether this relationship differs between Black and White women.

Methods

LBW data was derived from the 2013–2019 National Center for Health Statistics and National Vital Statistics System Birth Files. Food insecurity data was derived from Feeding America’s 2013–2019 Map the Meal Gap project. Analyses included descriptive statistics and regression models.

Results

Data were available for 3037 US counties. Food insecurity significantly predicted county-level LBW (t(3035) = 44.48, P <  .001) and explained 39.46% of the variance in LBW (F(13,035) = 1978.03, P <  .001, R = .63). Food insecurity predicted LBW for …

Spatial Analysis Of American Chestnut (Castanea Dentata) Distribution And Ecology In Kentucky’S Federal Lands, Jacob Raymond Pease

Murray State Theses and Dissertations

Anthropogenic factors have been the cause of the decline of tree species across the globe. From unsustainable logging and development to disease and improper management, threats to forests have taken their toll. The American chestnut (Castanea dentata) was once an integral basal tree species in Appalachian forests, but chestnut blight drove the species to functional extinction by the mid-1900s. The recent creation of genetically modified chestnuts gives hope for future restoration of the species throughout its historical range. Despite blight resistance, effective restoration will require optimal site selection for finding and planting chestnuts, which will maximize limited resources. …

Wildlife Distribution Mapping And Analysis In Gorongosa National Park, Mozambique, Using Site And Satellite Imagery Data, Pinho Joaquim Munhequeira Mr

Murray State Theses and Dissertations

One of Mozambique's most important conservation sites, Gorongosa National Park has seen critical ecological changes over the past several decades resulting from climate variability, habitat loss, and political instability. This research integrates Geographic Information Systems (GIS) and remote sensing to examine the relationship between vegetation dynamics and wildlife population, and distribution. The main goals of this study are to evaluate the spatial distribution of particular wildlife species: buffalo (Syncerus caffer), elephant (Loxodonta africana), hippopotamus (Hippopotamus amphibius), and zebra (Equus quagga), and determine the impact of vegetation density and land cover on their …

Dictyostelids: The Second Major Group Of Slime Molds, P. Liu, Z.J. Zhang, J.H. Ge, Y. Zou, Z. Li, S. Li, Y. Li, S.L. Stephenson

Biological Sciences Faculty Publications and Presentations

The dictyostelids (also called cellular slime molds or social amoebae) are among the more abundant and widespread groups of microorganisms in terrestrial ecosystems. Despite this fact, they are totally unknown to most people, who sometimes confuse the dictyostelids with myxomycetes (or plasmodial slime molds). The first dictyostelid (Dictyostelium mucoroides) was described by the German Oskar Brefeld in 1869. More than 180 species are now known, and these organisms have been recorded from the high arctic to the subantarctic. The primary microhabitat for dictyostelids is the soil/humus layer on a forest floor, but they also occur in a number of other …

Saatnya Memberikan Vaksin Influenza Untuk Tenaga Kesehatan, Anshari Saifuddin Hasibuan

Jurnal Penyakit Dalam Indonesia

No abstract provided.

Impact Of Urban Development On Uv Exposure: A Clustering And Machine Learning Assessment, Taufik Roni Sahroni Mr., Verdi Yasin, Lulut Alfaris, Reza Ariefka, Ruben Cornelius Siagian, Mohammad Alfin Karim, Nana Rahdiana, Ade Suhara

Journal of Environmental Science and Sustainable Development

The relocation of Indonesia's capital city is anticipated to promote inclusive economic growth while embracing cultural diversity. However, this transition may affect ultraviolet (UV) radiation exposure patterns. The study investigated variations in UV exposure in the IKN region, focusing on urban development factors such as land use and population density that affect public health, sun protection, and skin cancer prevention. The research hypothesized that UV radiation is significantly correlated with these factors. UV Index data from 2010-2023, a hierarchical clustering method, identifies complex data patterns without determining the number of clusters. XGBoost, a machine learning model, was used for handling …

Predicting Tuberculosis Vulnerability Based On Environmental Factors Using Multi-Criteria Analysis In Bukittinggi, Eka Budi Satria, Indang Dewata, Iswandi Umar, Nurhasan Syah, Linda Handayuni, Evi Hasnita

Media Kesehatan Masyarakat Indonesia

Tuberculosis is still an infectious disease problem and the main cause of death in Indonesia, where there was an increase in cases from 301 per 100,000 population (2020) to 354,000 per 100,000 population (2021), with the death rate increasing by 55%. This research aims to determine the TB vulnerability cluster influenced by the main risk factors, namely TB prevalence, cure rate, immunization, population density, and population arrivals in Bukittinggi, using the Weight Product (WP) analysis method, and then describe them by mapping tuberculosis vulnerability. The findings indicate that four sub-districts exhibit the highest levels of tuberculosis vulnerability: Tarok Dipo (0.0379), …

Metagenomic Analysis Of Bacterial Communities In Waters Of Lake Natron, Arusha, Tanzania, Sadikiel E. Kaale, Robert S. Machang’U, Thomas J. Lyimo

Tanzania Journal of Science

Metagenomics involves genetic material extraction and sequencing directly from environmental samples in order to gain insights and relationships that exist between microbes and their surroundings. Few studies have been done in extreme environments including soda lakes such as Lake Natron which is found in Arusha region, Tanzania. This study recorded high pH and salinity values confirming the lake's extremity. Full-length 16S rRNA reads sequenced through PacBio was used to reveal first metagenomic snapshots of bacterial communities from 10 random points at the lake shoreline waters. The results showed the dominance of Proteobacteria and Firmicutes with relative abundances of 98.46% and …

Cross-Generational Perception Analysis Of The Role Of Sharia Economics In Reducing Social Inequality In Jakarta (Case Study Of Gen Z, Gen Y, Gen X, And Early Gen X), Kuncoro Hadi, Nuraini Nuraini

Journal Of Middle East and Islamic Studies

This study aims to analyze cross-generational perceptions of the role of Islamic economics in reducing social inequality in Jakarta. Using a quantitative approach, this study collected data from 994 respondents divided into four age groups (18-25 years, 26-35 years, 36-45 years, and 46-55 years). Data were analyzed using the Kruskal-Wallis test to evaluate differences in perceptions between age groups on the basic principles of Islamic economics, the fairness of the system, and the effectiveness of its implementation. The results showed significant differences in understanding and perception between age groups, with 26-35 years old having the highest level of understanding. The …

Biphasic Models Improved S-Metolachlor Dissipation Endpoint Predictions, K. Badou-Jeremie Kouame, Mary Savin, Cammy Willett, Thomas R. Butts, Erin Grantz, Matthew Bertucci, Samantha E. Robinson, Rodrigo Werle, Nilda Roma-Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Accurate predictions of herbicide dissipation endpoints are essential for making environmental management decisions, estimating the duration of weed control, and deciding crop replant and rotation options. The performance of the single first-order (SFO), first-order multiple-compartment (FOMC), bi-exponential (BEXP), first-order double-exponential decay (FODED), and first-order two-compartment (FOTC) was evaluated to describe S-metolachlor dissipation. Results showed that the BEXP and FOTC were not appropriate. The FODED was ranked as the top model with the lowest Akaike's information criterion (AICc) value among the other three candidate models and was followed by the FOMC model. The SFO displayed the largest root mean square …

Stable Isotope Analyses Of Eye Lenses And Stomach-Content Analysis Reveal Ontogenetic Variation In Arctic Whitefish Trophic Dynamics, Jonah A. Bacon

Fisheries

Determining the ontogenetic trophic ecology of sympatric, morphologically similar fishes is critical for increasing our understanding of life history. We combined bulk and amino acid compound-specific stable isotope analysis of eye lenses with stomach-content analysis to examine ontogenetic trophic dynamics of four amphidromous whitefishes (Arctic Cisco Coregonus autumnalis, Least Cisco C. sardinella, Broad Whitefish C. nasus, Humpback Whitefish C. pidschian) from the central Beaufort Sea, Alaska. Compound-specific stable nitrogen isotope results showed slight increases in trophic position across ontogeny for each species and indicated the feasibility of this method for comparing the trophic ontogenetic development of closely related, mobile predator …

Implementation Of A Food Security Program To Reduce Hypertension At A Primary Care Clinic, Maribel Ballesteros

Master's Projects and Capstones

The food security program aims to reduce hypertension and food insecurity by increasing access to fresh fruits and vegetables. Although food insecurity is a growing public health issue, the food security program experienced significantly low enrollment compared to projected values. The quality improvement project was conducted in an adult medicine department in a primary care clinic in San Francisco serving the Latinx community. To address the issue of low program enrollment, a comprehensive educational food security program flyer was developed containing program information, including frequently asked questions. The flyer aimed to increase program enrollments by increasing program education. Fifty flyers …

Identifying Fecal Contamination Sources In The Grand Bay National Estuarine Research Reserve, Amanda M. Free

Theses and Dissertations

The Grand Bay National Estuarine Research Reserve (GNDNERR) has a history of elevated fecal coliform counts. However, the source of the contamination is not well understood. According to past sanitary surveys, there has been a history of malfunctioning residential septic systems and inadequate wastewater treatment in the upper watershed. Feral hogs (Sus scrofa) and birds are also abundant in the estuary and could be potential contributors to elevated fecal coliform levels. To better understand the temporal and spatial variation of fecal coliforms in the GNDNERR and inform oyster reef management, eight sites within the GNDNERR watershed were sampled monthly for …

Projecting Land Cover Changes And Impacts On Bird Conservation Using Geographic Information System, Remote Sensing And A Cellular Automata – Artificial Neural Network Model In Nairobi National Park, Kenya., Frank Juma Ong'ondo

Theses and Dissertations

This study examines land cover changes and their projected future impacts on bird species conservation in and around Nairobi National Park, Kenya. 2016 and 2023 Satellite imagery, analyzed through Google Earth Engine and the MOLUSCE plugin were used to assess changes in five land cover types: grassland, shrubland, forest, urban, and water. Bird population data from the Kenya Bird Map were used to evaluate birds' responses to land cover changes. Birds were categorized into five habitat guilds—grassland-dependent, shrubland-dependent, forest-dependent, water-dependent, and urban-dependent bird species. Between 2016 and 2023, grassland and shrubland decreased by 14.21% and 5.54%, respectively, and urban increased …

Habitat Suitability Modeling For Optimizing Stand Initiation And Restoration Efforts Of Economically And Ecologically Important Hardwoods, Segun Michael Adeyemo

Theses and Dissertations

This dissertation addresses critical challenges in forest management and restoration in the Lower Mississippi Alluvial Valley (LMAV) through a series of interconnected studies focused on improving habitat suitability modeling and growth prediction for oak species. The research employs advanced modeling techniques to enhance our understanding of species-habitat relationships and forest dynamics in the context of climate change. Initial studies focused on developing ensemble habitat suitability models for American chestnut (Castanea dentata) and butternut (Juglans cinerea), two historically important but currently threatened tree species. These models predict suitable habitats and potential range shifts under various climate change scenarios, highlighting the species' …

The Old Sword And The Sea: A Medieval European Sword Off The Coast Of Newe-Yam, Joppe Gosker, Jacob Sharvit, Izhak Hershko, Dan Braitman, Yotam Asscher

'Atiqot

This article examines a sword discovered on the seabed near Newe-Yam, providing an analysis of its physical characteristics. The location of the discovery and the submarine iron corrosion processes are described. The sword, covered in a biogenic crust, was studied using non- and minimally invasive techniques, and compared with contemporary swords. A European origin and an approximate date in the twelfth–thirteenth centuries CE are proposed. The study also discusses the role of swords in Medieval European society, their association with authority and chivalry, and the romantic perceptions concerning Crusader swords.

Studies Of Media To Maximize The Expression Of Bacterial Metalloprotease Genes As Potential Therapeutics For Human Alzheimer’S Disease, Uday Kiran Chigurupati

Honors Capstones

This study investigates the potential of bacterial metalloprotease genes as therapeutic agents for Alzheimer's Disease (AD). The research focuses on Pseudomonas 20ei1 (P. 20ei1), a bacterial species isolated from lagoon water, which contains pitrilysin genes that share similarities with human insulysin. Six pqqL-related genes were identified in P. 20ei1 for this study. The research methodology involved bioinformatic studies, bacterial cell culture in various media, RNA extraction, purification, and cDNA synthesis. Quantitative PCR analysis was performed to analyze gene expression levels in different cDNA samples. The bacteria grown in the medium with insoluble phosphate has shown higher expression of selected genes …

Estimating The Carbon Flux Of Argyropelecus Aculeatus Within The Gulf Of Mexico, Sidney R. Trimble

All HCAS Student Capstones, Theses, and Dissertations

Anthropogenic impacts have led to increased levels of anthropogenic carbon within the atmosphere and the world’s oceans. The Biological Carbon Pump (BCP) plays a key role in reducing the amount of carbon in the atmosphere and oceans by aiding in the export and sequestration of anthropogenic carbon. This occurs when carbon exchange between the atmosphere and the upper ocean takes place, and the carbon is then transferred down into the deep sea. Mesopelagic fishes may aid in this process of carbon transfer. Though the role of mesopelagic fishes is understudied in our world’s oceans, there are previous studies that focus …