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Identification And Genomic Characterization Of Candidate Starch And Lactate Utilizing Bacteria From The Rumen Of Beef Cattle, Venkata Bandarupalli

Electronic Theses and Dissertations

The rumen functions as an anaerobic fermentation chamber where microbial communities ferment feedstuffs into SCFAs. These SCFAs are critical to the ruminant host since they fulfill 70% of its energy requirements. In intensive management systems, ruminants are fed with grain-rich diets, which contain high levels of starch that help meet the energy demands of high producing animals. When grain-based diets are fed to ruminants, ruminal amylolytic and lactate metabolizing bacteria predominate. Grain overload can cause rapid production and accumulation of lactate, resulting in proliferation of amylolytic bacteria and death of lactate metabolizing bacteria. Consequently, high lactate levels result in a …

Hysplit As An Environmental Impact Assessment Tool To Study The Data Discrepancies Between Olea Europaea Airborne Pollen Records And Its Phenology In Sw Spain, Alejandro Monroy-Colín, J. M. Maya-Manzano, Rafael Tormo-Molina, Raúl Pecero-Casimiro, María Ángeles Gonzalo-Garijo, Santiago Fernández-Rodríguez

Articles

The olive tree (Olea europaea) is a native evergreen tree in the Mediterranean region, being one of the most important causes of seasonal respiratory allergies in Mediterranean countries. This work aims to relate flowering phenology, source tree distribution, meteorology, and airborne pollen records for this species and to analyse the possible arrival of air masses from distant areas during days when differences between the phenological and pollen peaks. Aerobiological sampling was carried out in Badajoz (SW Spain) for 4 years (2016–2019) using a Hirst volumetric sampler. Trees were geolocalized in the city and surrounding areas. The pollination phenology of 15 …

Postmortem Interval Estimation Based On Eukaryotic Community Associated With Soil Under Decomposing Porcine Remains, Amanda M. Haase

Master of Science in Forensic Science Directed Research Projects

Recent studies have shown that bacteria associated with soils under a carcass change significantly both temporally and spatially. These studies were done in both laboratory and field conditions, but with limited replications. In addition, limited information exists on temporal and spatial changes in eukaryotic community structure associated with soil under decomposing remains. This study was designed to fill in these gaps and expand on previous studies to improve postmortem interval (PMI) estimation techniques as well as to identify cadaver decomposition islands (CDI) based on eukaryotic community structure associated with soil under vertebrate remains. To accomplish this goal, soil samples were …

Journal Of The Arkansas Academy Of Science - Volume 74, 2020, Academy Editors

Journal of the Arkansas Academy of Science

No abstract provided.

Vertebrate Natural History Notes From Arkansas, 2020, C. Renn Tumlison, Matt Connior, Blake Sasse, Henry Robison, Stan Trauth, S Higdon, L Baer, Z. Baer, R. Stinson, D. Carson, T. Inebnit, L. Lewis, Roger Perry, Ron Redman

Journal of the Arkansas Academy of Science

Smaller details of natural history often go undocumented to science if those details are not parts of larger studies, but small details can provide insights that lead to interesting questions about ecological relationships or environmental change. We have compiled recent important observations of distribution and reproduction of fishes and mammals. Included are new distributional records of mammals, and observations of reproduction in several mammals for which few data exist in Arkansas. A rare record of the Long-tailed weasel, a special of special concern in Arkansas, is documented from Newton Co. We also provide evidence that Seminole bats likely reproduce in …

First Record And Notes On The Ecology Of The Boreal Chorus Frog (Pseudacris Maculata) In Arkansas, Matthew B. Connior, Kory G. Roberts

Journal of the Arkansas Academy of Science

We report a new state record for Pseudacris maculata from Arkansas. Furthermore, we conducted an ecological study from this population of P. maculata from Benton County. We found this population was primarily breeding during February and March. We also report limited findings on their reproduction, diet, and parasites.

The Development Of Social Behavior In The Tibetan Macaque (Macaca Thibetana), Rose Amrhein

All Master's Theses

Social cognition is vital for the proper integration into adulthood for any highly social animal species. The development of social intelligence during the childhood and adolescence of a social organism affects the individual throughout its life. This social intelligence allows for the establishment and maintenance of bonds through the formation of empathy, the understanding of intention and emotion, and theory of mind in some species. Changes to the rate and effectiveness of social development could lead to an individual incapable of integrating into the social environment of adulthood. Yet, much still needs to be learned about the process and influences …

The Seasonality And Parasite Richness And Prevalence Of The Weddelli’S Saddleback Tamarin (Leontocebus Weddelli), Krista Banda

All Master's Theses

This study surveyed the intestinal helminths (parasitic worms) of Weddelli’s saddleback tamarins (Leontocebus weddelli), focusing on seasonality in parasite prevalence and richness. The collaborative study with Field Projects International took place at the Estación Biológica Rio Los Amigos (EBLA) in southeastern Peru. Fecal samples were collected by following semi-habituated groups of tamarins, yielding 16 samples in the dry season of 2015 and 11 samples in the wet season of 2015-2016. Findings were interpreted to understand trends for parasite prevalence and richness between the two seasons; however, novel helminths for the study species were observed. Trends were interpreted with …

Long-Distance Dispersal By Eastern Gray Squirrels In Suburban Habitats, Noah G. Perlut

Environmental Studies Faculty Publications

Natal dispersal by Sciurus carolinensis (Eastern Gray Squirrel) is poorly understood, given so rarely reported, yet dispersal patterns in small mammals can affect seed dispersal and predation, as well as population dynamics of predators. Herein, I document long-distance dispersal by 3 Eastern Gray Squirrels from the suburban coastal campus of the University of New England in Biddeford, ME. Mean dispersal distance was 10.1 km (min–max = 6.3–14.5 km), occurring in random directions (SW, S, NW). These results, combined with the previous studies, better describe the distribution of natal dispersal by Eastern Gray Squirrel—critical information in understanding population processes and potentially …

The Effect Of Seasonality On Yellow Perch Ecology And Ecotoxicology Within Lake Manganese, Bailey Duxbury

Dissertations, Master's Theses and Master's Reports

Seasonality is a consistent component of aquatic ecosystems yet most fish biological and ecotoxicological studies commonly employ field sampling protocols focused during the warm open water season with minimal emphasis placed on winter sampling, especially for north-temperate latitude ecosystems. Such strategies limit our understanding of poikilotherm biology and ecology during the overwintering seasons. Here, I investigated seasonal changes in yellow perch (Perca flavescens) biology, ecology and ecotoxicology over a one-year period in Lake Manganese. Significant seasonality was observed for metrics including fish energy densities (kJ/g), gonadosomatic indices, whole-body lipid contents, and carbon stable isotope values (δ¹³C). …

Risk Factors Prioritization For Chronic Obstructive Pulmonary Disease, Lester Wong Vázquez, María Fernanda Cueva Moncayo, Laura Paola Advendaño Castro

Neutrosophic Sets and Systems

No abstract provided.

West Virginia's Model Of Buprenorphine Expansion: Preliminary Results, Erin L Winstanley, Laura R Lander, James H Berry, James J Mahoney, Wanhong Zheng, Jeremy Herschler, Patrick Marshalek, Sheena Sayres, Jay Mason, Marc W Haut

Project ECHO Bibliography

West Virginia (WV) is situated at the epicenter of the opioid epidemic with the highest rates of overdose deaths and some of the lowest rates of access to life saving evidence-based medication assisted treatment (MAT) for patients with opioid use disorder (OUD). WV used a modified hub-and-spoke model to build organizational capacity for facilities to use buprenorphine to treat patients with OUD and to provide ongoing case consultation. The purpose of this study is to 1) describe the group-base model of buprenorphine treatment and the model used to build organizational capacity, 2) to describe the preliminary results of buprenorphine expansion …

Monk Parakeet (Myiopsitta Monarchus Boddaert, 1783), Michael L. Avery

United States Department of Agriculture Wildlife Services: Staff Publications

Common Names: Monk Parakeet, Quaker Parakeet, Quaker Parrot, Quaker Conure, Grey-headed Parakeet

The natural distribution of the Monk Parakeet (Myiopsitta monachus Boddaert, 1783) extends from southern Bolivia, through Paraguay, southern Brazil and Uruguay to southern Argentina (Fig. 10.1 ). It is documented as invasive in a range of countries, and of these, there are at least 17 countries where they are breeding in the wild, as detailed below. ...

The Monk Parakeet is among the most successful invasive bird species in the world. Unlike many other invasive birds, such as the Ring-necked Parakeet (Psittacula krameri) and the …

Effects Of Non-Commercial Thinning On Great Horned Owls On Turnbull National Wildlife Refuge, Christopher P. Brady

EWU Masters Thesis Collection

To sustain forest health, increase species diversity and reduce wildfire events in the ponderosa pine (Pinus ponderosa) forests of at Turnbull National Wildlife Refuge (TNWR) managers have implemented a variety of approaches including prescribed burning and non-commercial thinning. The impacts of thinning on owl species diversity and habitat occupancy have not been studied in these ponderosa pine forests. My study had the following objectives 1) compare forest stand metrics between treatment plots, 2) compare owl species richness between treatment plots, 3) examine if occupancy and detection patterns of Great Horned Owls varied with forest condition and season, respectively, and 4) …

Assessment Of Eating Habits And Lifestyle During Coronavirus Pandemic In The Mena Region: A Cross-Sectional Study, Leila Cheikh Ismail, Tareq M. Osaili, Maysm N. Mohamad, Amina Al Marzouqi, Amjad H. Jarrar, Antonis Zampelas, Carla Habib-Mourad, Dima Omar Abu Jamous, Habiba I. Ali, Haleama Al Sabbah, Hayder Hasan, Latifa Mohammed Rashid Almarzooqi, Lily Stojanovska, Mona Hashim, Reyad R.Shaker Obaid, Samar Elfeky, Sheima T. Saleh, Zahieh A.M. Shawar, Ayesha S. Al Dhaheri

All Works

© The Authors 2020. The coronavirus disease (COVID-19) has rapidly spread globally, forcing countries to apply lockdowns and strict social distancing measures. The aim of this study was to assess eating habits and lifestyle behaviors among residents of the Middle East and North Africa (MENA) region during the lockdown. A cross-sectional study among adult residents of the MENA region was conducted using an online questionnaire designed on Google Forms during April 2020. A total of 2970 participants from 18 countries participated in the current study. During the pandemic, over 30% reported weight gain, 6.2% consumed five or more meals per …

Changes In The Home Range Sizes Of Terrestrial Vertebrates In Response To Urban Disturbance: A Meta-Analysis, Kate O'Donnell, Javier Delbarco-Trillo

Faculty Publications – Biological Sciences

The unprecedented growth rate in human population and the increasing movement of people to urban areas is causing a rapid increase in urbanisation globally. Urban environments may restrict or affect the behaviour of many animal species. Importantly, urban populations may change their spatial movement, particularly decreasing their home ranges in response to habitat fragmentation, the presence of landscape barriers and the availability and density of resources. Several species specific studies suggest that urban animals decrease their home ranges compared with their non-urban counterparts; however, it remained unclear whether this pattern is widespread across taxa or is instead restricted to specific …

Composition Of Dung Beetle Communities In A Tropical Montane Forest Alters The Rate Of Dung Removal More Than Species Diversity Alone, Elizabeth A. Engle

Browse all Theses and Dissertations

Dung beetles provide key ecological functions by degrading and recycling dung. I used experimentally-assembled communities to examine the role of species richness, community biomass, species diversity, species identity, and community composition in dung removal, using Ateuchus chrysopyge, Copris nubilosis, Onothophagus cyanellus, and Dichotomius satanas. I hypothesized: (1) that as species richness, biomass, and diversity increases within a community, dung removal increases; and (2) species are not functionally equivalent, so community composition should influence dung removal rates. As species richness, biomass, and diversity of experimentally-assembled communities increased, the proportion of dung removed also increased. Also, the four species in this study …

Molecular Gut-Content Analysis Of Adult Ground Beetles (Coleoptera: Carabidae) Provides No Evidence Of Predation Of Western Corn Rootworm (Coleoptera: Chrysomelidae) In A Nebraska Corn Agroecosystem, Camila Oliveira-Hofman, Vinícius S. Victor, Lance Meinke, Julie A. Peterson

Department of Entomology: Faculty Publications

This study was conducted to characterize the ground beetle (Coleoptera: Carabidae) community in Nebraska continuous cornfields and investigate the potential for predation of the western corn rootworm, Diabrotica virgifera virgifera LeConte, a key rootfeeding insect pest that is an annual management challenge in this system. Seven collection dates were conducted at five commercial cornfields in west central Nebraska during the growing season of 2014. In each field, carabids were sampled using five 24-h pitfall traps. Carabid specimens were placed in 95% ethanol in the field and stored at –20 °C to preserve DNA. After identification to the species level, DNA …

Soil Sample Timing, Nitrogen Fertilization, And Incubation Length Influence Anaerobic Potentially Mineralizable Nitrogen, Jason Clark, Kristen S. Veum, Fabián G. Fernández, Newell R. Kitchen, James J. Camberato, Paul Carter, Richard Ferguson, David W. Franzen, Daniel E. Kaiser, Carrie A. M. Laboski, Emerson Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Understanding the variables that affect the anaerobic potentially mineralizable N (PMNan) test should lead to a standard procedure of sample collection and incubation length, improving PMNan as a tool in corn (Zea mays L.) N management. We evaluated the effect of soil sample timing (preplant and V5 corn development stage [V5]), N fertilization (0 and 180 kg ha−1) and incubation length (7, 14, and 28 d) on PMNan (0–30 cm) across a range of soil properties and weather conditions. Soil sample timing, N fertilization, and incubation length affected PMNan differently based on soil and weather conditions. Preplant vs. V5 PMNan …

Mammal Community Structure Through The Paleocene-Eocene Thermal Maximum, Danielle Fraser, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Human-mediated species invasion and climate change are leading to global extinctions and are predicted to result in the loss of important axes of phylogenetic and functional diversity. However, the long-term robustness of modern communities to invasion is unknown, given the limited timescales over which they can be studied. Using the fossil record of the Paleocene- Eocene Thermal Maximum (PETM; ~ 56 Ma) in North America, we evaluate mammalian community-level response to a rapid global warming event (5° to 8°C) and invasion by three Eurasian mammalian orders and by species undergoing northward range shifts. We assembled a database of 144 species …

Black Vulture Conflict And Management In The United States: Damage Trends, Management Overview, And Research Needs, Bryan M. Kluever, Morgan Pfeiffer, Scott C. Barras, Brett Dunlap, Lee A. Humberg

United States Department of Agriculture Wildlife Services: Staff Publications

Contrary to rapid declines of many vulture (Accipitridae, Cathartidea) species worldwide, black vulture (Coragyps atratus) populations are increasing and expanding their range in North America. Vultures exhibit complex behaviors and can adapt to any human-dominated landscape or land use. These traits, combined with population growth and range expansion, have contributed to increased human–vulture conflicts. Our goal was to summarize the current status and trends in human–black vulture conflicts (hereafter human– vulture conflicts), review available management strategies, identify knowledge gaps, and provide recommendations to enhance management and understanding of this species and the associated conflicts. We found human–vulture conflicts …

A Simple, Inexpensive Method For Mark-Recapture Of Ixodid Ticks, Alexis White, Robin Minch, Lindsey Bidder, Holly Gaff

Biological Sciences Faculty Publications

Mark-recapture techniques have been widely used and specialized to study organisms throughout the field of biology. To mark-recapture ticks (Ixodida), we have created a simple method to mark ticks using nail polish applied with an insect pin secured in a pencil that allows for a variety of questions to be answered. For measuring tick control efficacy, estimating population estimates, or measuring movement of ticks, this inexpensive mark-recapture method has been easily applied in the field and in the lab to provide useful data to answer a variety of questions about ticks.

The Natural History Of The Marsh Rice Rat, Oryzomys Palustris, In Eastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The marsh rice rat, Oryzomys palustris, is a common rodent in tidal marshes of eastern Virginia, including those on the barrier islands. It also is present in grassy old fields in upland habitats in the coastal plain and parts of the piedmont of Virginia. This report summarizes what has been learned in recent decades about the population biology of this species in Virginia, including aspects of behavior, density, diet, distribution, genetics, habitats, mammal associates, and reproduction.

Causes Of Variable Jarrah (Eucalyptus Marginata) And Marri (Corymbia Calophylla) Seedling Density At Establishment Following Bauxite Mining In The Northern Jarrah Forest Of Western Australia, Tai White-Toney

Theses

Seedling densities at establishment of jarrah (Eucalyptus marginata D. Don ex Sm.) and marri (Corymbia calophylla (Lindl). K. D. Hill & L. A. S. Johnson) following bauxite mining in the Northern Jarrah Forest of south-western Australia are variable and few factors explored during 40 years of field studies have explained this variability. This study explored establishment within the framework of limitation due to amount of seed supply and number of suitable microsites for establishment. First, relationships were identified between seedling establishment densities on 654 mine sites restored between 1998 and 2017 and restoration practices (seed and fertiliser application rates), climate …

Association Between Opening A Jail And Sexually Transmitted Infections In Rural Counties Across The United States, Tyler Harvey

Public Health Theses

Abstract

Objective

To estimate the effect of openings jail in rural counties on county-level chlamydia, gonorrhea, and syphilis prevalence rates.

Methods

We used county-level data from the National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention (2005-2017) to obtain chlamydia, gonorrhea, and syphilis rates, and the American Correctional Association’s National Jail and Adult Detention Directory (2013-2014) to locate rural jail openings. Using a generalized synthetic control method, we estimated the effect of opening jails in 41 rural counties between 2010 and 2012 across the United States on sexually-transmitted infections.

Results

We found an average treatment effect for chlamydia prevalence …

More Than Meets The Eye: A Taxonomic Revision Of The Nearctic Species In The Eye-Gnat Genus Amiota Loew (Diptera: Drosophilidae), Lance E. Jones

Dissertations and Theses

Thorough biotic inventories are still needed even in families as seemingly well-studied as fruit flies (Diptera: Drosophilidae). Drosophilidae have had an outsize effect on the history of biology because of their pivotal role in the study of genetics, development, and evolution. Even with more than a century of intensive study, large gaps remain in our understanding of diversity in this fly family, including well-studied areas such as North America. This thesis presents a taxonomic revision of the Nearctic species of the genus Amiota Loew. Twenty-three species are identified as being new to science for publication at a later date. This …

Evaluation Of The Impacts Of Radio-Marking Devices On Feral Horses And Burros In A Captive Setting, Kathryn A. Schoenecker, Sarah R. B. King, Gail H. Collins

Human–Wildlife Interactions

Radio-collars and other radio-marking devices have been invaluable tools for wildlife managers for >40 years. These marking devices have improved our understanding of wildlife spatial ecology and demographic parameters and provided new data facilitating model development for species conservation and management. Although these tools have been used on virtually all North American ungulates, their deployment on feral horses (Equus ferus caballus) or burros (E. asinus) has been limited. To determine if radio-collars and radio-tags could be safely deployed on feral equids, we conducted a 1-year observational study in 2015 to investigate fit and wear of radio-collars …

No Need For Artificial Light: Nocturnal Activity By A Diurnal Reptile Under Lunar Light, Jeanelle L. K. Brisbane, Matthijs P. Van Den Burg

Neotropical Biodiversity

Species are commonly described as either diurnal or nocturnal, with rare reports of deviations outside their normal activity period. Observations of nocturnal activity by diurnal Anolis are limited to lizards utilizing anthropogenic light sources (night-light niche) to prolong their daily activity period. Here, we report nocturnal activity by Anolis cristatellus facilitated solely by natural moonlight and discuss implications for when this behavior would be recognized as common in the future. The identification of nocturnal activity in Anolis is particularly noteworthy given, in contrast to other taxa, our extensive knowledge of this study system which will allow for future ecological studies …

Identification And Analysis Of Genes With Differential And Tissue-Specific Expression In Poplars, Bailey Mitchell

Masters Theses

Poplars have become one of the most frequently studied plant species for their applications in biotechnology, commercial benefits, and ecological importance. Microarray analysis is commonly used to analyze differential gene expression in many organisms. Investigations have examined differential gene expression and performed functional analyses on a single tissue or organ within poplar trees or a closely related set of tissues and organs, but usually do not broadly analyze gene expression across a large number of tissues and organs in poplar. This thesis work aims to generate data on the most differentially expressed genes for the major groups of tissues and …

Mountain Lions In North Dakota: A Public Opinion Survey, Theodore A. Darnell

Theses and Dissertations

Breeding mountain lion (Puma concolor) populations currently inhabit the western portion of North Dakota. In recent years, apparent increases in human-lion interactions across North Dakota, and other Midwest states, have challenged wildlife managers who strive to balance biological and social carrying capacities of these animals. In 2019, we surveyed 2,000 residents of North Dakota, USA, using a self-administered mail survey to discern knowledge of and attitudes towards mountain lions, and to explore whether the presence of these animals would influence decisions to recreate in western North Dakota. Our questionnaire included 12 questions designed to ascertain respondent attitudes towards mountain lions. …