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Remote Reef Cryptobenthic Diversity: Integrating Autonomous Reef Monitoring Structures And In Situ Environmental Parameters, M Steyaert, M Lindhart, A Khrizman, Rb Dunbar, Mb Bonsall, Da Mucciarone, E Ransome, N Santodomingo, P Winslade, Cei Head

School of Biological and Marine Sciences

Coral reef sessile organisms inhabiting cryptic spaces and cavities of the reef matrix perform vital and varied functional roles but are often understudied in comparison to those on exposed surfaces. Here, we assess the composition of cryptobenthic taxa from three remote tropical reef sites (Central Indian Ocean) alongside a suite of in situ environmental parameters to determine if, or how, significant patterns of diversity are shaped by local abiotic factors. To achieve this, we carried out a point-count analysis of autonomous reef monitoring structure (ARMS) plate images and employed in situ instrumentation to recover long-term (12 months) profiles of flow …

Wild/Feral Horses: The Great Debate Between Freedom And Capturing, Jolee Lamoreaux

Fall Student Research Symposium 2022

Wild Horses have been around for as long as anyone can remember. However, there has been a great debate that these horses are harmful to the environment and they need to be taken care of either by rehoming or slaughtering. This study aims to determine why people think these horses are harmful and what has been done to try and solve the issue. I conducted my research mostly by researching keywords and evaluating my search results to examine credible sources. The three major claims that I wanted to make sure I addressed in my paper were the history and background …

How I Approach Leishmaniasis: Diagnosis And Treatment In The United States, Tara E Ness, Rachel Martin-Blais, Jill E Weatherhead

Faculty, Staff and Students Publications

Leishmaniasis is a vector-borne disease caused by over 20 species of obligate intracellular protozoa belonging to the genus Leishmania. Leishmaniasis has a global distribution, including in the United States, and can cause a spectrum of clinical syndromes, including cutaneous, mucosal, and visceral diseases depending on host factors and the infecting Leishmania spp. Accurate diagnosis, including Leishmania species identification, is an important step to guide the most appropriate therapeutic intervention. Antileishmanial therapy is dependent on the Leishmania spp. identified, the clinical syndrome, and the child's immune system. However, many treatment regimens for children have been extrapolated from adult clinical trials, which …

Tectonic Thresholds: Reclaiming Space Through Geomorphological Design, Amreeta Verma

Architecture Thesis Prep

This research posits that a revitalization of indigenous earth architecture practices in a contemporary context can mitigate the immense waste and embodied carbon in the construction industry. Earth materials are the focus of this research because they are locally sourced, abundantly available, and can be reused or returned to the natural environment, when utilized in a circular consumption cycle. Designing for reuse reduces the impact of construction waste on the burgeoning issue of environmental degradation and resource depletion.

The structural viability and environmental enclosure capabilities of soil throughout its lifecycle will be tested in different forms derived geomorphically from the …

Drone Imagery Protocols To Map Vegetation Are Transferable Between Dryland Sites Across An Elevational Gradient, Anna Roser, Josh Enterkine, Juan M. Requena-Mullor, Nancy F. Glenn, Alex R. Boehm, Marie-Anne De Graaff, Patrick E. Clark, Fred Pierson, T. Trevor Caughlin

Biology Faculty Publications and Presentations

The structure and composition of plant communities in drylands are highly variable across scales, from microsites to landscapes. Fine spatial resolution field surveys of dryland plants are essential to unravel the impact of climate change; however, traditional field data collection is challenging considering sampling efforts and costs. Unoccupied aerial systems (UAS) can alleviate this challenge by providing standardized measurements of plant community attributes with high resolution. However, given widespread heterogeneity in plant communities in drylands, and especially across environmental gradients, the transferability of UAS imagery protocols is unclear. Plant functional types (PFTs) are a classification scheme that aggregates the diversity …

Mejorar La Raza: Measuring The Implicit Anti-Black Racial Bias Of Multiracial Individuals., Katalina Traxler

Electronic Theses and Dissertations

This dissertation sought to examine if there are implicit anti-Black racial bias differences across multiracial people who identify as Black/White compared to multiracial people who do not identify as Black/White, accounting for age, citizenship, and education level. It was also determined if age, citizenship status, and education level moderate the relationship between multiracial identity and implicit anti-Black racial bias. The theories guiding this dissertation were: Heider’s Balance Theory, Multiracial Identity Development, and White Identity Development. The data were collected from Project Implicit, a non-profit organization and international collaborative of researchers who are interested in implicit social cognition. The data analysis …

Avian Species Distribution Models: Using Location Data To Inform Management Decisions, Marilyn E. Wright

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Both state and federal wildlife agencies strive to conserve and protect wildlife and their habitats as an important public resource. Applied management decisions often rely on being able to obtain data that can efficiently and effectively enhance the understanding of these systems for informing management actions. Wildlife managers often focus efforts on a small subset of species from an ecosystem, typically called focal species, who can serve as surrogates for understanding the health and function of the system. Models that consider how these focal species interact with the ecosystem are often used to better understand important aspects of their life …

Analysis Of Ecological Tradeoffs Between Congeneric Shrimp In Coastal Mississippi Waters, Baylor K. Lynch

Honors Theses

Palaemonidae is an ecologically important and abundant family of shrimp that link the benthos to many estuarine food webs. Palaemon pugio and Palaemon vulgaris regularly co-occur along estuarine edge habitats despite previous studies suggesting different preferred sediment types and salinity regimes. The objective was to determine if competition is occurring between the congeners by comparing their relative abundance and assessing isotope niche space along an estuarine gradient. I seasonally sampled various edge habitats at four sites throughout Biloxi Bay, MS, using fyke nets fished over a tidal cycle from November 2020 to November 2021. Collected organisms were identified to the …

What Is Contributing To Covid-19 Mortality In Harris County, Texas?, Rachel Roy

Dissertations and Theses (Open Access)

The COVID-19 pandemic exposed long-standing inequities that have been present in the United States since its origin. While the entire country has been devastated by this pandemic, low-income and minority communities were hardest hit. Race alone does not predict poor health outcomes. Rather, the historic strategies implemented in the United States, such as redlining, placed racial and ethnic minorities in neighborhoods where cycles of disinvestment in education, transportation infrastructure, flooding infrastructure, healthy food, and clean air and water have created low socioeconomic status and poor health outcomes. This public health research aims to understand how historical processes have created and …

Ectotherm Thermoregulation At Fine Scales: Novel Methods Reveal A Link Between The Spatial Distribution Of Temperature And Habitat Quality, Ian Axsom

Master's Theses

Investigating ecological questions at the scale of individual organisms is necessary to understand and predict the biological consequences of environmental conditions. For small organisms this can be challenging because we need tools with the appropriate accuracy and resolution to record and quantify their ecological interactions. Unfortunately, many of our existing tools are only appropriate for medium to large organisms or those that are wide ranging, inhibiting our ability to investigate the ecology of small organisms at fine scales.

In Chapter 1, I tested a novel workflow for recording animal movements at very fine spatial and temporal scales. The workflow combined …

A Quantitative Examination Of The Influence Of Social And Structural Communication Variables On The Social Connectedness Of People Experiencing Homelessness, Shawn Michael Evans

Graduate Theses and Dissertations

This thesis examined the influence of social and structural communication variables on the perceived social connectedness of people experiencing homelessness in the Northwest Arkansas (NWA) and Joplin, Missouri areas. This study employed the ecological perspective of communication infrastructure theory (CIT; Ball-Rokeach et al., 2001) and a communication perspective which envisions communicative interaction as constitutive of social experience. Using survey data from 166 participants, this study examined 11 research questions and hypotheses drawn from extant literature on homelessness, social connectedness, and CIT. ANOVAs, t-tests, and hierarchical multiple regression analyses revealed a complex relationship between individuals and the communicative environment. This study …

Landscape Genomics Of The Tussock Cottongrass (Eriophorum Vaginatum) And The Dwarf Birch (Betula Nana) In North Central Alaska, Elizabeth Stunz

Open Access Theses & Dissertations

Global climate change has resulted in geographic range shifts of flora and fauna at a global scale. Extreme environments, like the Arctic, are seeing some of the most pronounced changes. This region covers 14% of the Earthâ??s land area, and while many arctic species are widespread, understanding ecotypic variation at the genomic level will be important for elucidating how range shifts will affect ecological processes. Increase in shrub cover is a major effect of ongoing climate change in arctic tundra ecosystems. The relative increases in abundance and cover of shrub species such as birch, willow, and alder (Betula, Salix, and …

Biology And Epidemiology Of Dengue Viruses In The El Paso And The Surrounding Usa And Mexico Border Communities, Pedro Miguel Palermo Infante

Open Access Theses & Dissertations

Dengue is considered one of the most important human arboviral diseases worldwide. Dengue cases have increased in the last three decades in the Americas, especially along the United States (US)- Mexico (MX) border region, where the main vector of dengue, Aedes aegypti mosquito, is widely distributed. Explosive outbreaks of dengue in northern Mexico have been associated with imported and local transmission of dengue in the US border communities, especially in the Southeast Texas area, also known as Rio Grande Valley. Due to the unknown if dengue virus (DENV) is present in other areas in the US border located west of …

Forest Structure And Composition Alleviate Human Thermal Stress, Loïc Gillerot, Dries Landuyt, Rachel Oh, Winston T. L. Chow, Et Al

Research Collection College of Integrative Studies

Current climate change aggravates human health hazards posed by heat stress. Forests can locally mitigate this by acting as strong thermal buffers, yet potential mediation by forest ecological characteristics remains underexplored. We report over 14 months of hourly microclimate data from 131 forest plots across four European countries and compare these to open-field controls using physiologically equivalent temperature (PET) to reflect human thermal perception. Forests slightly tempered cold extremes, but the strongest buffering occurred under very hot conditions (PET >35°C), where forests reduced strong to extreme heat stress day occurrence by 84.1%. Mature forests cooled the microclimate by 12.1 to …

Application Of Stable Isotopes To Study Movement Ecology And Diet Variation In A Migratory Songbird, Andrea Contina, Allison K. Pierce, Scott W. Yanco, Eli S. Bridge, Jeffrey F. Kelly, Michael B. Wunder

School of Integrative Biological & Chemical Sciences Faculty Publications

Whether and how migratory organisms exhibit interindividual behavioral and/or physiological variation across movement strategies remains an open question. The Dark-eyed Junco (Junco hyemalis) is a migratory songbird known for its intraspecies variation displayed in relation to morphology, song repertoires, and migration. Thus, studies focusing on juncos can reveal how migratory strategy may covary with other individual-scale factors and, therefore, identify the selective forces driving intraspecies variations throughout its distribution. We used Dark-eyed Junco hydrogen stable isotope feather values (δ²H) and implemented a Bayesian framework to infer the breeding and molting origin of migratory juncos captured on their winter grounds in …

Population Demography, Spatial Ecology, And Habitat Use Of The Florida Box Turtle (Terrapene Bauri) On A Barrier Island, Michael D. Mills

USF Tampa Graduate Theses and Dissertations

Turtles are one the most threatened vertebrate groups in the world due to anthropogenic threats such as habitat loss and overexploitation. In addition to occupying a range that has been vulnerable to major habitat loss, the Florida box turtle (Terrapene bauri) is particularly at risk of overexploitation due to its popularity in the pet trade. Sanibel Island is a barrier island in southwest Florida that has experienced major habitat loss and is the site of a recent poaching event. In response to these threats, studies of both the population demography and spatial ecology were conducted on Sanibel’s Florida box turtle …

An Assessment Of Future Tidal Marsh Resilience In The San Francisco Estuary Through Modeling And Quantifiable Metrics Of Sustainability, James T. Morris, Judith Z. Drexler, Lydia J.S. Vaughn, April H. Robinson

Faculty Publications

Quantitative, broadly applicable metrics of resilience are needed to effectively manage tidal marshes into the future. Here we quantified three metrics of temporal marsh resilience: time to marsh drowning, time to marsh tipping point, and the probability of a regime shift, defined as the conditional probability of a transition to an alternative super-optimal, suboptimal, or drowned state. We used organic matter content (loss on ignition, LOI) and peat age combined with the Coastal Wetland Equilibrium Model (CWEM) to track wetland development and resilience under different sea-level rise scenarios in the Sacramento-San Joaquin Delta (Delta) of California. A 100-year hindcast of …

Visualization Of Lamb Adulteration Based On Hyperspectral Imaging For Non-Destructive Quantitative Detection, Zhao Jing-Yuan, Zhang Jun-Qin, Sun Mei, Chen Xing-Hai, Liu Ye-Lin

Food and Machinery

Objective: This study aimed to establisha rapid and accurate prediction method of lamb adulteration by using visible/near-infrared (400~1 000 nm) and short-wave near-infrared (900~1 700 nm) hyperspectral imaging techniques.Methods: The data acquisition of lamb adulterated with different proportions of duck meat using visible/near-infrared (400~1 000 nm) and short-wave near-infrared (900~1 700 nm) hyperspectral imagers was performed to compare the effect of partial least squares (PLS) modeling with different spectral preprocessing methods in the two band ranges. Then the normalized preprocessing method was selected in the visible-NIR band, and the standard normal variate transformation (SNV) preprocessing method was …

Collective Dynamics Support Group Drumming, Reduce Variability, And Stabilize Tempo Drift, Dobromir Dotov, Lana Delasanta, Daniel J. Cameron, Edward W. Large, Laurel Trainor

Journal Articles

Humans are social animals who engage in a variety of collective activities requiring coordinated action. Among these, music is a defining and ancient aspect of human sociality. Human social interaction has largely been addressed in dyadic paradigms, and it is yet to be determined whether the ensuing conclusions generalize to larger groups. Studied more extensively in non-human animal behavior, the presence of multiple agents engaged in the same task space creates different constraints and possibilities than in simpler dyadic interactions. We addressed whether collective dynamics play a role in human circle drumming. The task was to synchronize in a group …

The Significance Of Cephalopod Beaks As A Research Tool: An Update, José C. Xavier, Alexey V. Golikov, José P. Queirós, Catalina Perales-Raya, Rigoberto Rosas-Luis, José Abreu, Giambattista Bello, Paco Bustamante, Juan C. Capaz, Valerie H. Dimkovikj, Angel F. González, Hugo Guímaro, Airam Guerra-Marrero, José N. Gomes-Pereira, Jorge Hernández-Urcera, Tsunemi Kubodera, Vladimir Laptikhovsky, Evgenia Lefkaditou, Fedor Lishchenko

Marine Science

The use of cephalopod beaks in ecological and population dynamics studies has allowed major advances of our knowledge on the role of cephalopods in marine ecosystems in the last 60 years. Since the 1960’s, with the pioneering research by Malcolm Clarke and colleagues, cephalopod beaks (also named jaws or mandibles) have been described to species level and their measurements have been shown to be related to cephalopod body size and mass, which permitted important information to be obtained on numerous biological and ecological aspects of cephalopods in marine ecosystems. In the last decade, a range of new techniques has been …

Combining Isotopic And Genetic Analyses To Quantify Microbial Facilitation Of Recalcitrant Resource Use By Terrestrial And Aquatic Consumers, Alexi Christina Besser

Biology ETDs

Quantifying the flow of energy and nutrients through food webs is foundational to understanding the structure and function of ecosystems. Here, I utilize the stable carbon and nitrogen isotope analysis of individual amino acids to trace the movement of essential amino acids through terrestrial and freshwater food webs in New Mexico, USA. I first explore isotopic patterns among co-occurring terrestrial plants and aquatic algae. I then combine this molecular isotopic approach with 16S and 18S rRNA sequencing to demonstrate the importance of gut microbiota as sources of essential amino acids to wild mammalian hosts. Next, I explore the roles of …

Studies Of Roseau Cane Dieback In The Lower Mississippi River Delta Based On Remote Sensing Data Including Landsat, Worldview, And Drone, Nan Shang

LSU Doctoral Dissertations

This research focused on the Roseau cane (Phragmites australis) dieback assessment in the lower MRD of Louisiana and introduced a comprehensive and systematic multi-source remote sensing method for assessing wetland and Roseau cane dieback and habitat dynamics analysis from three scale levels from large-scale to small scale.

Large-scale historical vegetation/land change analyses were conducted in the lower MRD based on Landsat in the past two decades (2001 - 2021). A strong increasing trend of vegetation was found since 2005. Around 51 km² ofdieback area was detected which accounts for 11% of the overall vegetation coverage. This research …

Metagenomics Next Generation Sequencing (Mngs): An Exciting Tool For Early And Accurate Diagnostic Of Fungal Pathogens In Plants, Fatma Seyma Gökdemir, Özlem Darcansoy Iseri, Abhishek Sharma, Premila Achar, Füsun Eyidogan

Faculty Articles

Crop output is directly impacted by infections, with fungi as the major plant pathogens, making accurate diagnosis of these threats crucial. Developing technology and multidisciplinary approaches are turning to genomic analyses in addition to traditional culture methods in diagnostics of fungal plant pathogens. The metagenomic next-generation sequencing (mNGS) method is preferred for genotyping identification of organisms, identification at the species level, illumination of metabolic pathways, and determination of microbiota. Moreover, the data obtained so far show that this new approach is promising as an emerging new trend in fungal disease detection. Another approach covered by mNGS technologies, known as metabarcoding, …

Evaluating The Effect Of Public Health Governance Structure And Public Opinion On Covid-19 Disease Control Interventions, Daniel Chacreton

USF Tampa Graduate Theses and Dissertations

Background

Since the start of the COVID-19 outbreak, the responses to the pandemic varied greatly from nation to nation. In the US, state-level variance in responses has likely contributed to the disparate COVID-19 infection-related state-level outcomes such as incidence and case fatality rates. The large variances in national and sub-national responses to COVID-19 when combined with the abundance of factors that influence disease transmission rates has created a number of important research opportunities.

Methods

In this vain, this research study aims to describe the relationship that exists between public health governance structure and public sentiment and COVID-19 control measure effectiveness …

Suitability Of Compensatory Saltmarsh Habitat For Feeding And Diet Of Multiple Estuarine Fish Species, Thomas Stamp, Elizabeth West, Steve Colclough, Shaun Plenty, Benjamin Ciotti, Tim Robbins, Emma Sheehan

School of Biological and Marine Sciences

Saltmarsh provides essential fish feeding and nursery habitat but has globally declined by 50%. We used a statistical block design to compare fish feeding activity within human-engineered or “re-aligned” saltmarsh to established saltmarsh. Linear and multivariate modelling highlighted that Thinlip Mullet (Chelon ramada) and European Bass (Dicentrarchus labrax) feeding rates were 16% and 31% lower within re-aligned than established saltmarshes, whereas Gobies (Pomatoschistus spp.) fed at the same rate as in both habitats. Analysis of European bass and Goby gut contents highlighted that important detritivorous prey species were up to 85.6% lower in re-aligned sites. Lower vegetation density may have …

The Lumberjack, November 02, 2022

Cal Poly Humboldt's Student Newspaper

The student newspaper of Humboldt State University.

A Roadmap To Understanding Diversity And Function Of Coral Reef-Associated Fungi, Anna Roik, Miriam Reverter, Claudia Pogoreutz

School of Biological and Marine Sciences

Tropical coral reefs are hotspots of marine productivity, owing to the association of reef-building corals with endosymbiotic algae and metabolically diverse bacterial communities. However, the functional importance of fungi, well known for their contribution to shaping terrestrial ecosystems and global nutrient cycles, remains underexplored on coral reefs. We here conceptualize how fungal functional traits may have facilitated the spread, diversification, and ecological adaptation of marine fungi on coral reefs. We propose that functions of reef-associated fungi may be diverse and go beyond their hitherto described roles of pathogens and bioeroders, including but not limited to reef-scale biogeochemical cycles and the …

Economic Freedom, Climate Culpability, And Physical Activity Indicators Among Children And Adolescents: Report Card Grades From The Global Matrix 4.0, Eun Young Lee, Patrick Abi Nader, Salomé Aubert, Silvia A. González, Peter T. Katzmarzyk, Asaduzzaman Khan, Wendy Y. Huang, Taru Manyanga, Shawnda Morrison, Diego Augusto Santos Silva, Mark S. Tremblay

Population and Public Health Science Faculty Publications

Background: Macrolevel factors such as economic and climate factors can be associated with physical activity indicators. This study explored patterns and relationships between economic freedom, climate culpability, and Report Card grades on physical activity-related indicators among 57 countries/jurisdictions participating in the Global Matrix 4.0. Methods: Participating countries/ jurisdictions provided Report Card grades on 10 common indicators. Information on economic freedom and climatic factors were gathered from public data sources. Correlations between the key variables were provided by income groups (ie, low- and middle-income countries/jurisdictions and high-income countries/jurisdictions [HIC]). Results: HIC were more economically neoliberal and more responsible for climate change …

County-Level Societal Predictors Of Covid-19 Cases And Deaths Changed Through Time In The United States: A Longitudinal Ecological Study, Philip J. Bergmann, Nathan A. Ahlgren, Rosalie A. Torres Stone

Biology

People of different racial/ethnic backgrounds, demographics, health, and socioeconomic characteristics have experienced disproportionate rates of infection and death due to COVID-19. This study tests if and how county-level rates of infection and death have changed in relation to societal county characteristics through time as the pandemic progressed. This longitudinal study sampled monthly county-level COVID-19 case and death data per 100,000 residents from April 2020 to March 2022, and studied the relationships of these variables with racial/ethnic, demographic, health, and socioeconomic characteristics for 3125 or 97.0% of U.S. counties, accounting for 96.4% of the U.S. population. The association of all county-level …

Viewing Animal Migration Through A Social Lens, Ellen O. Aikens, Iris D. Bontekoe, Lara Blumenstiel, Anna Schlicksupp, Andrea Flick

Natural Resource Management Faculty Publications

Evidence of social learning is growing across the animal kingdom. Researchers have long hypothesized that social interactions play a key role in many animal migrations, but strong empirical support is scarce except in a few unique systems and species. In this review, we aim to catalyze advances in the study of social migrations by synthesizing research across disciplines and providing a framework for understanding when, how, and why social influences shape the decisions animals make during migration. Integrating research across the fields of social learning and migration ecology will advance our understanding of the complex behavioral phenomena of animal migration …