Digital Commons Network^™

Genetic Mechanisms Underlying Maladaptation In Specialized Species Interactions, Nitin Ravikanthachari

Theses and Dissertations

Adaptation has been used as the framework to understand the power of natural selection in structuring biodiversity and driving biological interactions. However, recent examples have indicated that many organisms are maladapted to their local conditions. Maladaptation can result from various causes including rapid environmental change, novel environments, interplay of evolutionary forces (viz: gene flow-selection balance) and anthropogenic disturbance.

To dissect the genetic mechanisms underlying maladaptation, I used the interaction between Pieris macdunnoughii (Remington) (Lepidoptera: Pieridae) which lays eggs on an invasive mustard Thlaspi arvense (L.) (Brassicaceae), which is lethal to the larvae.

First, local adaptation to avoid laying eggs on …

Ecological Studies Of Wolves On Isle Royale, Sarah Hoy, Rolf O. Peterson, John A. Vucetich

Ecological Studies of Wolves on Isle Royale

Annual Report 2022-2023

Projecting The Effects Of Climate Change And Urbanization On Longleaf Pine Stands In The Florida Flatwoods, Lilian Grace Hutchens

Theses and Dissertations

The southeastern United States once held millions of hectares of highly connected longleaf pine ecosystem. In a dramatic range reduction, longleaf pine now occupies less than 5% of its original extent, its remnant patches existing within a matrix of human-dominated land uses. Conservation planning for longleaf pine ecosystems is complicated given the ecosystem’s reliance on fire and the broad spatial and temporal scales at which longleaf pine management must operate. Planning timelines for longleaf pine management extend into the end of the 21st century, a period during which climate, fire regimes, and land cover are all expected to change, influencing …

Effect Of Green Facade On The Urban Microclimate With Different Street Canyon, Aya Mostafa Hassoun, Mary Felix

Architecture and Planning Journal (APJ)

Using simulation tools, this study investigates the effect of green walls (GWs) on the urban heat island (UHI) phenomenon within different street sizes. It can be planted without taking up more area and could enhance the microclimate environment, which is why it has a wide range of use potential in urban areas. Because Mina City has a threat of UHI, it was chosen for this study. The temperature within various street sizes in the research region was evaluated using only software called ENVI-met that simulates climate, and three common scenarios were chosen. In the first experiment, green walls extending over …

Potential Of Dietary Flavonoids In The Prevention And Therapy Of Covid-19 : Focusing In Mast Cell - Calcium Ion Channel Axis, Aryo Tedjo

Indonesian Journal of Medical Chemistry and Bioinformatics

Syndrome Acute Respiratory Syndrome Corona Virus-2 (SARS COV2) is the virus that causes the COVID19 disease and has caused more than 4 million deaths worldwide. This virus infects the host cell through the interaction between the virus’s glycoprotein S molecule with the ACE2 which is the virus receptor, binding, undergoes membrane fusion and enters the cell and replicates in it. Currently, several strategies used in developing anti-viral compounds are targeting compounds that play a role in the process of entering the virus into host cells such as ACE2, S glycoprotein, and TMPRSS2, while some target main proteases such as RNA …

Evidence That Increasing Serum 25(Oh)D Concentrations To 30 Ng/Ml In The Kingdom Of Saudi Arabia And The United Arab Emirates Could Greatly Improve Health Outcomes, William B. Grant, Fatme Al Anouti, Barbara J. Boucher, Hana M. A. Fakhoury, Meis Moukayed, Stefan Pilz, Nasser M. Al-Daghri

All Works

Accumulating evidence supports the potential protective effects of vitamin D against chronic diseases such as Alzheimer’s disease, autoimmune diseases, cancers, cardiovascular disease (ischaemic heart disease and stroke), type 2 diabetes, hypertension, chronic kidney disease, stroke, and infectious diseases such as acute respiratory tract diseases, COVID-19, influenza, and pneumonia, as well as adverse pregnancy outcomes. The respective evidence is based on ecological and observational studies, randomized controlled trials, mechanistic studies, and Mendelian randomization studies. However, randomized controlled trials on vitamin D supplementation have largely failed to show benefits, probably due to poor design and analysis. In this work, we aim to …

Effects Of Landscape Structure On Plants Species Richness In Small Grassland Remnants In Two Different Landscapes, S. A. O. Cousins, O. Eriksson

IGC Proceedings (1977-2023)

There is an increasing interest in using the landscape as the operational scale in many ecological studies. Current species richness in the landscape may be explained by past land use, and habitats may harbour species favoured by an environment that no longer exists. In this study we have included both a landscape scale and a temporal scale. The objective was to explain species pattern and the effect of isolation, habitat size and surrounding land use, and past land use change, on small grassland remnants in rural landscapes.

The Materiality Of Waka And Ikebana: Locating Ecological Relationships Between Delivery And Arrangement, Bianca Oliveira

All HCAS Student Capstones, Theses, and Dissertations

Rhetorical applications of delivery and arrangement have grown to reflect the global interconnectedness of cultures, bodies, and material objects. Informed by rhetorical and ecological approaches to delivery and arrangement (Edbauer Rice; Lambke;), this project performs a rhetorical and ecological analysis of ikebana (Japanese flower arrangements) and waka (Classical Japanese poetry) by Meishu-Sama and Saigyō Hōshi. Waka and ikebana, as compositional modes, reveal an interpolation of delivery and arrangement that invites both composer and audience to embody nature. As such, this project examines the visual-material and sonic rhetorics of waka and ikebana in order to discover how delivery and arrangement affect …

Gambaran Kematian Maternal Di Kota Depok Sebelum Dan Sesudah Pandemi Covid-19, Dhora Yufita, Milla Herdayati

Jurnal Biostatistik, Kependudukan, dan Informatika Kesehatan

Pandemi COVID-19 menimbulkan tantangan baru bagi kematian ibu yang berdampak pada seluruh aspek. Kematian ibu perlu menjadi perhatian khusus dikarenakan Angka Kematian Ibu (AKI) merupakan salah satu indikator yang menggambarkan kesejahteraan suatu bangsa. Tujuan penelitian ini adalah untuk mengetahui gambaran kematian ibu sebelum dan setelah pandemi COVID-19 di Kota Depok. Penelitian ini merupakan penelitian deskriptif kuantitatif yang menggambarkan isi suatu variabel dalam penelitian dan tidak dimaksudkan untuk menguji hipotesis tertentu. Hasil penelitian didapatkan bahwa kematian ibu di Kota Depok terbanyak terjadi pada tahun 2021 dengan jumlah kematian 65 kasus, dan penyebab tertinggi adalah COVID-19. Tingginya kematian ibu akibat COVID-19 dikarenakan …

Indigenous Science Network Bulletin - March 2023

Indigenous Science Network

The first issue of indigenous Science Network Bulletin for 2023 welcomes Yolanda Lopez-Maldonado and Torres Webb to the First Nations editorial board. The editorial features Yolanda Lopez Maldonado, an environmental scientist of Maya ancestry, and the Bulletin contains news and views, resources; papers; and information about Indigenous Astronomy and conferences and seminars.

Development Of A Benchmark Eddy Flux Evapotranspiration Dataset For Evaluation Of Satellite-Driven Evapotranspiration Models Over The Conus, John M. Volk, Justin Huntington, Forrest S. Melton, Richard Allen, Martha C. Anderson, Joshua B. Fisher, Ayse Kilic, Gabriel Senay, Gregory Halverson, Kyle Knipper, Blake Minor, Christopher Pearson, Tianxin Wang, Yun Yang, Steven Evett, Andrew N. French, Richard Jasoni, William Kustas

AES Faculty Publications and Presentations

A large sample of ground-based evapotranspiration (ET) measurements made in the United States, primarily from eddy covariance systems, were post-processed to produce a benchmark ET dataset. The dataset was produced primarily to support the intercomparison and evaluation of the OpenET satellite-based remote sensing ET (RSET) models and could also be used to evaluate ET data from other models and approaches. OpenET is a web-based service that makes field-delineated and pixel-level ET estimates from well-established RSET models readily available to water managers, agricultural producers, and the public. The benchmark dataset is composed of flux and meteorological data from a variety of …

Midwest Ecological Study Outlined The Neighbourhood Literacy Environment And The Inequitable Access Children Have To Books In Public Library Branches, Nandi Prince

Publications and Research

A Review of: Crosh, C., Hutton, J., Szumlas, G., Xu, Y., Beck, A., & Riley, C. (2022). Inequities in public library branch access and children’s book circulation in a Midwestern American city. The International Journal of Information, Diversity, & Inclusion (IJIDI), 6(3), 68-81. https://doi.org/10.33137/ijidi.v6i4.38127

A Multiscale Linkage Between Riverscape And Fish Community Coevolution, Loren W. Stearman

Dissertations

Sediment dynamics are foundational to stream and watershed morphology. Yet aquatic ecologists have relied on an oversimplified model of sediment dynamics characterizing sediments as agents of stream bed burial, and which fails to describe many types of aquatic habitat evolution. In this dissertation I employ both fluvial geomorphic and ecological frameworks to gain a deeper understanding of how sediment dynamics shape stream morphology and fish community evolution at multiple scales. Using a paired historic and contemporary approach, I analyzed geomorphic evolution and fish community change in the Bayou Pierre, Mississippi, from the 1980s to recent. Patterns of erosion due to …

Money Matters: Time For Prevention And Early Intervention To Address Family Economic Circumstances, Nick Axford, Vashti Berry

Peninsula Medical School

Child poverty is associated with poorer physical and mental health, negative educational outcomes and adverse long-term social and psychological consequences, all of which impact on service demand and expenditure. Until now, however, prevention and early intervention practice has tended to focus on enhancing inter-parental relationships and parenting skills (e.g., via relationship skills education, home visiting, parenting programs, family therapy) or child language, social-emotional and life skills (e.g., early childhood education, school-based programs, youth mentoring). Programs often target low-income neighborhoods or families but rarely address poverty directly. While there is substantial evidence for the effectiveness of such interventions in improving child …

Tritium: Its Relevance, Sources And Impacts On Non-Human Biota, Maria Florencia Ferreira, Andrew Turner, Emily L. Vernon, Christian Grisolia, Laurence Lebaron-Jacobs, Veronique Malard, Awadhesh N. Jha

School of Geography, Earth and Environmental Sciences

Tritium (3H) is a radioactive isotope of hydrogen that is abundantly released from nuclear industries. It is extremely mobile in the environment and in all biological systems, representing an increasing concern for the health of both humans and non-human biota (NHB). The present review examines the sources and characteristics of tritium in the environment, and evaluates available information pertaining to its biological effects at different levels of biological organisation in NHB. Despite an increasing number of publications in the tritium radiobiology field, there exists a significant disparity between data available for the different taxonomic groups and species, and observations are …

Historical Anthropogenic Disturbances Explain Long-Term Moorland Vegetation Dynamics, Francis Rowney, Ralph M. Fyfe, Leonard Baker, Henry French, Martha B. Koot, Havananda Ombashi, Rhys G. O. Timms

School of Geography, Earth and Environmental Sciences

Upland moorlands are important landscapes, but many are considered degraded as a result of human activities. Consequently, their protection and restoration are of substantial concern. In Europe, restoration activities are often aimed at reversing the effects of 19th and 20th century “agricultural improvements,” which often involved major drainage schemes. However, the ecological effects and long-term ecological context of “agricultural improvement” are not yet fully understood. To develop this understanding, we analyze paleoecological data (pollen, coprophilous fungal spores, microcharcoal) from five upland peatland sites using a range of analytical approaches: cluster analysis, principal component analysis, rate-of-change analysis, and regression analyses incorporating …

Benthic Habitat Mapping Of Mountain Top Bank Within The Northern Gulf Of Mexico Through Integrated Geophysical And Visual Data Analysis, Bethany Pertain

Master's Theses

Mesophotic coral ecosystems (MCEs) are among the seafloor ecosystems that have been poorly studied throughout the world’s oceans, but they are a vital and diverse ecosystem that should be prioritized for future mapping and ecological studies. Priority should be given to them because they possess natural, social, and economic values, and face a variety of threats, all of which, if not better understood will result in the loss of this unique ecosystem. Insights into these ecosystems, among other deep-sea environments, are lacking due to difficulty accessing them, inherent lag between data collection by an autonomous system and observation by a …

Bridging The Digital Divide: Using Ecological Modeling To Enhance Adult Student Recruitment And Retention In Higher Education, Katherine Dawson

Doctoral Dissertations

Higher education is at a crossroads. An enrollment cliff (Kline, 2019) looms and global instability only exacerbates the need for higher and continuing education. The global COVID-19 pandemic of 2020 highlighted the problem, and despite the evolutions in technology and Internet connectivity, there is still a chasm regarding equity of digital access. This applied dissertation study examined the barriers that exist for returning adult students to higher education and the digital divide in Louisiana. The study focused on the potential adult student population of Louisiana who have some college experience but no bachelor’s degree. Designed using archival research methods, the …

Lichens Of Ultramafic Rocks: A Multidisciplinary Approach To Understanding The Ecology Of An Understudied Organism In A Well-Studied System, Michael Mulroy

Master's Theses

Lichens are among the most prominent and successful life forms of metal-rich habitats, including ultramafic rocks and soils; however, research on lichens of ultramafic habitats is limited, especially on the North American continent. A review of the published literature on lichens of ultramafic substrates in North America yielded a total of 437 lichen species reported from ultramafic rocks and soils. Lichen assemblages of ultramafic substrates vary in composition and are dominated by acidophytic (low pH preferring) taxa with a minor, but consistent, basiphytic (high pH preferring) component. Species lists from ultramafic habitats in different geographic regions varied widely, suggesting that …

Unhealthy Herds And The Predator–Spreader: Understanding When Predation Increases Disease Incidence And Prevalence, Robert L. Richards, Bret D. Elderd, Meghan A. Duffy

Faculty Publications

Disease ecologists now recognize the limitation behind examining host–parasite interactions in isolation: community members—especially predators—dramatically affect host–parasite dynamics. Although the initial paradigm was that predation should reduce disease in prey populations (“healthy herds hypothesis”), researchers have realized that predators sometimes increase disease in their prey. These “predator–spreaders” are now recognized as critical to disease dynamics, but empirical research on the topic remains fragmented. In a narrow sense, a “predator–spreader” would be defined as a predator that mechanically spreads parasites via feeding. However, predators affect their prey and, subsequently, disease transmission in many other ways such as altering prey population structure, …

Delphi Initiative For Early-Onset Colorectal Cancer (Direct) International Management Guidelines, Giulia Martina Cavestro, Alessandro Mannucci, Francesc Balaguer, Heather Hampel, Sonia S Kupfer, Alessandro Repici, Andrea Sartore-Bianchi, Toni T Seppälä, Vincenzo Valentini, Clement Richard Boland, Randall E Brand, Tineke E Buffart, Carol A Burke, Riccardo Caccialanza, Renato Cannizzaro, Stefano Cascinu, Andrea Cercek, Emma J Crosbie, Silvio Danese, Evelien Dekker, Maria Daca-Alvarez, Francesco Deni, Mev Dominguez-Valentin, Cathy Eng, Ajay Goel, Josè G Guillem, Britt B S L Houwen, Charles Kahi, Matthew F Kalady, Fay Kastrinos, Florian Kühn, Luigi Laghi, Andrew Latchford, David Liska, Patrick Lynch, Alberto Malesci, Gianluca Mauri, Elisa Meldolesi, Pål Møller, Kevin J Monahan, Gabriela Möslein, Caitlin C Murphy, Karlijn Nass, Kimmie Ng, Cristina Oliani, Enrico Papaleo, Swati G Patel, Marta Puzzono, Andrea Remo, Luigi Ricciardiello, Carla Ida Ripamonti, Salvatore Siena, Satish K Singh, Zsofia K Stadler, Peter P Stanich, Sapna Syngal, Stefano Turi, Emanuele Damiano Urso, Laura Valle, Valeria Stella Vanni, Eduardo Vilar, Marco Vitellaro, Yi-Qian Nancy You, Matthew B Yurgelun, Raffaella Alessia Zuppardo, Elena M Stoffel, Associazione Italiana Familiarità Ereditarietà Tumori, Collaborative Group Of The Americas On Inherited Gastrointestinal Cancer, European Hereditary Tumour Group, And The International Society For Gastrointestinal Hereditary Tumours

Faculty, Staff and Student Publications

BACKGROUND & AIMS: Patients with early-onset colorectal cancer (eoCRC) are managed according to guidelines that are not age-specific. A multidisciplinary international group (DIRECt), composed of 69 experts, was convened to develop the first evidence-based consensus recommendations for eoCRC.

METHODS: After reviewing the published literature, a Delphi methodology was used to draft and respond to clinically relevant questions. Each statement underwent 3 rounds of voting and reached a consensus level of agreement of ≥80%.

RESULTS: The DIRECt group produced 31 statements in 7 areas of interest: diagnosis, risk factors, genetics, pathology-oncology, endoscopy, therapy, and supportive care. There was strong consensus that …

New Developments In Allergic Fungal Rhinosinusitis Pathophysiology And Treatment, Brian H Cameron, Amber U Luong

Faculty, Staff and Student Publications

Background: Allergic fungal rhinosinusitis (AFRS) is an endotype of chronic rhinosinusitis (CRS) with nasal polyps characterized by eosinophilic mucin laden with fungal hyphae entrapped in expanded sinus cavities with an exaggerated hypersensitivity to fungal elements. The last decade has elucidated fungi-driven inflammatory pathways contributing to the pathophysiology of chronic inflammatory respiratory diseases. In addition, novel therapeutic biologic options have become available for CRS over the last several years.

Objective: To review the current literature examining AFRS, focusing on recent developments in our understanding of its pathophysiology and implications for treatment options.

Methods: Review article.

Results: Fungi-driven respiratory inflammation has been …

Development Of The Menu Assessment Scoring Tool (Mast) To Assess The Nutritional Quality Of Food Service Menus, Claire Elizabeth Pulker, Leisha Michelle Aberle, Lucy Meredith Butcher, Clare Whitton, Kristy Karying Law, Amy Louise Large, Christina Mary Pollard, Georgina S. A. Trapp

Research outputs 2022 to 2026

Preventing the rise in obesity is a global public health priority. Neighbourhood environments can help or undermine people’s efforts to manage their weight, depending on availability of nutritious and nutrient-poor ‘discretionary’ foods. The proportion of household food budgets spent on eating outside the home is increasing. To inform nutrition policy at a local level, an objective assessment of the nutritional quality of foods and beverages on food service menus that is context-specific is needed. This study describes the development and piloting of the Menu Assessment Scoring Tool (MAST), used to assess the nutritional quality of food service menus in Australia. …

Short-Term Effects Of Carbon Monoxide On Morbidity Of Chronic Obstructive Pulmonary Disease With Comorbidities In Beijing, Zhiwei Li, Feng Lu, Mengmeng Liu, Moning Guo, Lixin Tao, Tianqi Wang, Mengyang Liu, Xiuhua Guo, Xiangtong Liu

Research outputs 2022 to 2026

The association between CO and chronic obstructive pulmonary disease (COPD) has been widely reported; however, the association among patients with type 2 diabetes mellitus (T2DM) or hypertension has remained largely unknown in China. Over-dispersed generalized additive model was adopted to quantity the associations between CO and COPD with T2DM or hypertension. Based on principal diagnosis, COPD cases were identified according to the International Classification of Diseases (J44), and a history of T2DM and hypertension was coded as E12 and I10-15, O10-15, P29, respectively. A total of 459,258 COPD cases were recorded from 2014 to 2019. Each interquartile range uptick in …

Unsettling Participation By Foregrounding More-Than-Human Relations In Digital Forests, Michelle Westerlaken, Jennifer Gabrys, Danilo Urzedo, Max Ritts

Geography

The question of who participates in making forest environments usually refers to human stakeholders. Yet forests are constituted through the participation of many other entities. At the same time, digital technologies are increasingly used in participatory projects to measure and monitor forest environments globally. However, such participatory initiatives are often limited to human involvement and overlook how more-than-human entities and relations shape digital and forest processes. To disrupt conventional anthropocentric understandings of participation, this text travels through three different processes of "unsettling"to show how more-than-human entities and relations disrupt, rework, and transform digital participation in and with forests. First, forest …

Presidential Vote Share And Covid-19 Vaccination Rate In Indonesia: A District-Level Cross-Sectional Ecological Study, Gede Benny Setia Wirawan, Ni Luh Zallila Gustina, Ivy Cerelia Valerie, I Gusti Ayu Indah Pradnyani Rs, Muchamad Zaenal Arifin, Pande Putu Januraga

Kesmas

Political affiliation has been reported as a determinant of COVID-19 vaccine acceptance in some countries, although few studies have examined the Asian context. This study aims to fill this gap by employing an ecological study design using Indonesian regions as data points. Political affiliation was represented by incumbent President Jokowi’s vote share in the 2019 presidential election. Potential confounders included population density, human development index, availability of hospitals and primary health care, 2019–2020 economic growth, COVID-19 mortality rate, and proportion of Muslims in the population. The final analysis included 201 out of 501 districts and cities in Indonesia. Controlling for …

The Association Between Time Spent On Screens And Reading With Myopia, Premyopia And Ocular Biometric And Anthropometric Measures In 6- To 7-Year-Old Schoolchildren In Ireland, Síofra Harrington, Veronica O'Dwyer

Articles

Purpose More time spent on near tasks has consistently been associated with the promotion of myopia. The World Health Organization advises limiting daily screentime to less than 2 h for children aged five and over. This study explored the relationship between time spent on screens and reading/writing with refractive status, ocular biometric and anthropometric factors in 6-to 7-year- olds in Ireland.

Methods Participants were 723 schoolchildren (377 boys [51.8%]), mean age 7.08 (0.45) years. The examination included cycloplegic autorefraction (1% cyclopentolate hydrochloride), ocular biometry (Zeiss IOLMaster), height (cm) and weight (kg). Screentime and reading/writing time were reported by parents/legal guardians …

Origination Of The Modern-Style Diversity Gradient 15 Million Years Ago, Isabel S. Fenton, Tracy Aze, Alexander Farnsworth, Paul Valdes, Erin E. Saupe

School of Biological and Marine Sciences

The latitudinal diversity gradient (LDG) is a prevalent feature of modern ecosystems across diverse clades^1–4. Recognized for well over a century, the causal mechanisms for LDGs remain disputed, in part because numerous putative drivers simultaneously covary with latitude^1,3,5. The past provides the opportunity to disentangle LDG mechanisms because the relationships among biodiversity, latitude and possible causal factors have varied over time^6–9. Here we quantify the emergence of the LDG in planktonic foraminifera at high spatiotemporal resolution over the past 40 million years, finding that a modern-style gradient arose only 15 million years ago. Spatial …

Primary Production Modeling Identifies Restoration Targets For Shifting Shallow, Eutrophic Lakes To Clear-Water Regimes, Leighton King, Janice Brahney, Scott Daly, Michael J. Paul, Kateri R. Salk, Soren Brothers

Watershed Sciences Faculty Publications

Benthic primary production (BPP) plays an important functional role in lakes, improving water quality by stabilizing clear-water regimes. Shallow, eutrophic lakes lacking BPP communities can be difficult to restore because self-stabilizing feedbacks of phytoplankton dominance can impede the establishment of BPP. BPP in lakes is light limited, and ecosystem models can provide guidance for determining the water clarity necessary to re-establish BPP dominance. We developed a multi-tiered framework for the restoration of shallow, eutrophic lakes that incorporates multiple turbidity sources, lake morphometry, and water-level fluctuations to determine water-clarity thresholds above which BPP dominance may be established. We present a case …

Cascading Effects Of Cover Crops On The Subsequent Cash Crop Defense Against The Polyphagous Herbivore Fall Armyworm (Spodoptera Frugiperda), Adegboyega Fajemisin, Alexis Racelis, Rupesh R. Kariyat

School of Earth, Environmental, & Marine Sciences Faculty Publications

Simple Summary

Although studies have started to show that the effects of cover crops can translate into the cash cropping season, there is little information on the cascading effects of cover crops on the subsequent cash crop defenses, especially against polyphagous herbivores. To bridge this information gap, we conducted a field and laboratory study to investigate the cascading effects of different cover crop species on the subsequent cash crop defense against the polyphagous herbivore fall armyworm (Spodoptera frugiperda) across three fields in the Lower Rio Grande Valley in south Texas. Our field and laboratory results revealed that cover crop treatments …