Digital Commons Network^™

Sex-Dependent Changes In Risk-Taking Predisposition Of Rats Following Space Radiation Exposure, Elliot Smits, Faith E. Reid, Ella N. Tamgue, Paola Alvarado Arriaga, Charles Nguyen, Richard A. Britten

Department Radiation Oncology & Biophysics Faculty Publications

The Artemis missions will establish a sustainable human presence on the Moon, serving as a crucial steppingstone for future Mars exploration. Astronauts on these ambitious missions will have to successfully complete complex tasks, which will frequently involve rapid and effective decision making under unfamiliar or high-pressure conditions. Exposure to low doses of space radiation (SR) can impair key executive functions critical to decision making. This study examined the effects of exposure to 10 cGy of Galactic Cosmic Ray simulated radiation (GCRsim) on decision-making performance in male and female rats with a naturally low predisposition for risk-taking (RTP) prior to exposure. …

A Two-Hit Model Of Executive Dysfunction: Simulated Galactic Cosmic Radiation Primes Latent Deficits Revealed By Sleep Fragmentation, Richard A. Britten, Ella N. Tamgue, Paola Arriaga Alvarado, Arriyam S. Fesshaye, Larry D. Sanford

Department Radiation Oncology & Biophysics Faculty Publications

Future Artemis-class missions to Mars will expose astronauts to prolonged space radiation (SR), sleep disruption, and operational demands requiring greater autonomy, placing decision making and executive function at heightened risk. Both SR and sleep fragmentation (SF) independently impair cognition, yet their combined effects remain poorly understood. Using the Associative Recognition Memory and Interference (ARMIT) task, we assessed cognitive performance in male rats exposed to 10 cGy of Galactic Cosmic Ray simulation (GCRsim), SF, or both. Under well-rested conditions, GCRsim-exposed rats exhibited overt deficits in the C.1.2 stage, performing at chance when reinforcement contingencies shifted, consistent with impaired cognitive flexibility. In …

Lap-Hsp60 Complex Modulates Epithelial Tight Junction Barrier, Arun Bhunia, Manalee Manalee Samaddar, Chen Sun, Nicholas Gallina, Nicole Irizarry-Tardi, Donqi Liu, Shivendra Tenguria, Rishi Drolia, Anika Jain, Daisuke Kihara, Wen Jiang, Kee-Hong Kim, Abigail Cox, Kurt Ristroph, Gregory Knipp, Nicholas Noinaj

Biological Sciences Faculty Publications

During infection, Listeria adhesion protein (LAP), a housekeeping enzyme, acts as a tight junction modulator (TJM) through interaction with Hsp60 to facilitate Listeria monocytogenes translocation across the intestinal epithelial barrier. Here, we used purified LAP as a potential TJM to overcome the limiting and variable effects observed by other agents in the class. We structurally determined the LAP interaction alone and in complex with Hsp60 utilizing cryo-EM and computational analysis. LAP structure resolved at 2.83 Å, forms multimeric interlocking dimers and tetramers, and the N-domain interacts with Hsp60, while the C-domain bridges the bacterial surface receptor InlB. The structural studies …

Cellular Responses Of Astrangia Poculata (Ellis And Solander, 1786) And Its Symbiont To Experimental Heat Stress, Tyler E. Harman, Daniel Barshis, Briana Hauff Salas, Kevin B. Strychar

Biological Sciences Faculty Publications

Climate change has had devastating effects on tropical coral reefs; however, much less is known regarding how heat stress affects temperate coral. This research focuses on Astrangia poculata (Ellis and Solander, 1786) collected from Narragansett Bay, RI, during the summer and winter seasons and understanding the effect of experimental thermal extremes (i.e., 26 °C) on seasonally different populations. Photosynthetic efficiency (Fv/Fm), symbiont density (via an inverse relationship with pixel intensity), and oxidative stress via reactive oxygen species (ROS) concentrations were measured on symbiotic and aposymbiotic A. poculata. Higher Fv/Fm rates were observed in summer- vs. winter-collected corals (p ≤ …

Alternative Splicing In A Coral During Heat Stress Acclimation And Recovery, Nitin Baliga, Kathryn Stanklewicz, Jacob Valenzuela, Serdar Turkarsian, Wei-Ju Wu, Kelly Gomez-Campo, Nicolas Locatelli, Trinity Conn, Veronica Radice, Katherine Parker, Rachel Alderdice, Line Bay, Christian Voolstra, Daniel Barshis, Iliana Baums

Biological Sciences Faculty Publications

Climate change has caused drastic declines in corals. As sessile organisms, corals acclimate to environmental shifts through genome-wide changes in gene expression, epigenetic modifications, and alterations in microbiome composition. However, alternative splicing (AS), a conserved mechanism of stress response in many organisms, has been under-explored in corals. Using short-term acute thermal stress assays, we investigated patterns of AS in the scleractinian coral Acropora cervicornis during response to low (33°C), medium (35°C), and high (37°C) heat stress and subsequent overnight recovery. Our findings demonstrate reproducible dynamic shifts in AS of at least 40 percent of all genes during response to heat …

Selective Nutrient Incorporation May Underestimate Heterotrophy Of A Mixotrophic Reef-Building Coral, Connor R. Love, Marleen Stuhr, Michael D. Fox, Veronica Z. Radice, Maoz Fine, Kelton W. Mcmahon, David L. Valentine

Biological Sciences Faculty Publications

Mixotrophic reef-building corals acquire nutrition via photosynthate translocation from endosymbiotic microalgae and by heterotrophic prey/particle capture. Heterotrophy promotes resistance to, and recovery from, environmental stress, but quantifying coral heterotrophy remains difficult due to complex resource exchanges within the coral holobiont. We interrogated the response of multiple biomarkers to coral heterotrophy using fatty acid profiling and stable isotope analysis of Stylophora pistillata grown along a controlled feeding gradient from pure autotrophy to pure heterotrophy. We found that fatty acids and nitrogen were effectively incorporated into both coral host and symbiont tissues, while carbon, which is the primary target for conventional heterotrophy …

Biotime 2.0: Expanding And Improving A Database Of Biodiversity Time Series, Maria Dornelas, Laura H. Antão, Amanda E. Bates, Viviana Brambilla, Jonathan M. Chase, Cher F. Y. Chow, Ada Fontrodona-Eslava, Anne E. Magurran, Inês S. Martins, Faye Moyes, Alban Sagouis, Samuel Adu-Acheampong, Daniel Acquah-Lamptey, Dušan Adam, Penelope A. Ajani, Aitor Albaina, Pablo Almaraz, Jeongseop An, Roger Sigismund Anderson, Madelaine Jean Robertson Anderson, Alexsander Z. Antunes, Ivan Arismendi, Linda Armbrecht, Pedro Aros-Mardones, Sreejith Kalpuzha Ashtamoorthy, Narayanan Ayyappan, Gal Badihi, Joseph J. Bailey, Andrew H. Baird, Mark Edward Baird, Sreekumar Vadakkethil Balakrishnan, José António L. Barão-Nóbrega, Adi Barash, Miguel Barbosa, Jos Barlow, Claus Bässler, Matthieu Beaumont, Natalie Beenaerts, Tiago Octavio Begot, Wallace Beiroz, Ricardo Beldade, David M. Bell, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-Cecchi, Cassandra E. Benkwitt, Pamela Medina-Van Berkum, Brandon T. Bestelmeyer, Matthew C. Betts, Maxwell Kelvin Billah, Anne D. Bjorkman, Magdalena Błażewicz, Christopher P. Bloch, Shane A. Blowes, Antonio Bode, Juliano A. Bogoni, Thomas Bolger, Timothy C. Bonebrake, Erik Bonsdorff, Roberta Bottarin, Luke N. Brokensha, Rob W. Brooker, Andrew J. Brooks, Helge Bruelheide, Thiago Almeida Bueno, Claire Laguionie, Mariana Lopes Campagnoli, James Cant, Erica Pellegrini Caramaschi, Alexandre Caron, Tadhg Carroll, Tancredi Caruso, Juan Carvajal-Quintero, Giuseppe Castaldelli, Edward Castañeda-Moya, Pedro V. Castilho, Sonia Zanini Cechin, Shahar Chaikin, Uchangi Manjunatha Chandrashekara, Tory J. Chase, Chaolun Allen Chen, Jorge José Cherem, Sei-Woong Choi, Erica M. Christensen, Alexander V. Christianini, Jackson Wing Four Chu, Peter Coad, Carl Van Colen, Lise Comte, Elisabeth J. Cooper, J. Hans C. Cornelissen, Eddy Cosson, Unai Cotano, Luc Crevecoeur, Shannan Kyle Crow, Graeme S. Cumming, Vanessa S. Daga, Gabriella Damasceno, Gergana N. Daskalova, Claire H. Davies, Robert A. Davis, Frank P. Day, Sussy De-La-Zerda, Amy Elizabeth Deacon, Indradatta De Castro-Arrazola, Steven Degraer, Kharran Deonarinesingh, Juan C. Diaz-Ricaurte, Christopher R. Dickman, Tara Dirilgen, Ciaran John Dolan, J. Emmett Duffy, Timothy E. Dunn, Giselda Durigan, Ciara Dwyer, Steven Earl, Dor Edelist, Graham John Edgar, Sally Edmonson, Ashley K. Elgin, Kari Elsa Ellingsen, Sarah C. Elmendorf, Ruth S. Eriksen, S. K. Morgan Ernest, Ruben Escribano, Paula Cabral Eterovick, Brian S. Evans, Jason D. Everett, Vesela Evtimova, Dan A. Exton, Andrew J. Fairbairn, Filipe Moreli Fantacini, Fabiano Turini Farah, Fábio Zanella Farneda, Mario E. Favila, Philippe Fernandez-Fournier, Braulio Fernández-Zapata, Diogo F. Ferreira, Carola Ferronato, Christopher R. Du Feu, Alessandra Fidelis, David A. Fifield, Vilmar Picinatto Filho, Walter Mesquita Filho, Robert N. L. Fitt, Carlos A. H. Flechtmann, William R. Fraser, Donna L. Fraser, Lídia Freixas, John Fryxell, Garrett J. Fundakowski, Scott Stanley Gabara, Elise Gallois, Mariana Garcia Criado, Emili García-Berthou, Joaquim Garrabou, Andrew R. Gates, Roberto Cazzola Gatti, Anna Gavioli, Tal Gavriel, Benoit Gendreau-Berthiaume, Xingli Giam, Carina Gjerdrum, Michael Glemnitz, Jasmin Annica Godbold, Daniel Gómez-Gras, Rodrigo Barbosa Gonçalves, Andy Goold, Richard R. Gordon, Menachem Goren, Fernando Vilas Boas Goulart, William G. Gould, Meagan M. Graboski, Nicholas A. J. Graham, Maurício Eduardo Graipel, Laura J. Grange, Aaron C. Greenville, Gary D. Grossman, Valeria A. Guinder, Peter Haase, Gary N. Haskins, Kris Havstad, Luise Hermanutz, Michael Julian Hames Hickford, Pamela Hidalgo, Pedro Higuchi, Andrew S. Hoey, Gert Van Hoey, Annika Hofgaard, Kristen T. Holeck, Robert D. Hollister, Richard T. Holmes, Mia Odell Hoogenboom, Joaquín Hortal, Tammy Horton, Chih-Hao Hsieh, Christine L. Huffard, Ida-Maria Huikkonen, Allen H. Hurlbert, Julian Hynes, Pascal Irz, Natalia Macedo Ivanauskas, Akemi Iwayama, Darren K. James, Ute Jandt, Anna M. Jażdżewska, Merlijn Jocque, Sophie T. Johnston, Samuel E. I. Jones, Faith A. M. Jones, Julia A. Jones, Edite Jucevica, Ugis Kagainis, Maiko Kagami, Jungwon Kang, Xuejia Ke, Erin Colleen Keeley, Rebecca Kinnear, Kari Klanderud, Uwe Klinck, Roel Van Klink, Stefan Klotz, Carolien Kockaert, Halvor Knutsen, Matti Koivula, Alessandra Kortz, Peter Kriegel, Chao-Yang Kuo, David J. Kushner, Rosina Kyerematen, Raphaël Lagarde, Lesley T. Lancaster, Ori Frid Landau, Wouter Van Landuyt, Eric R. Larson, Mai Lazarus, Cheol Min Lee, Jonathan S. Lefcheck, Jonas J. Lembrechts, Renato A. Ferreira De Lima, Romullo Guimarães Lima, Nathália G. S. Lima, Cristina Linares, Sandra C. Lindstrom, Francisco Lloret, John David Lloyd, Cleonice Maria Cardoso Lobato, David M. Lodge, Peter Richard Long, Celeste López-Abbate, Adrià López-Baucells, Julio Louzada, Maite Louzao, Antonella Lugliè, Micheli Ribeiro Luiz, S. Ellen Macdonald, Joshua S. Madin, André Lincoln Barroso Magalhães, Rajindra Mahabir, David Maphisa, Thomas Edward Martin, Marcio Martins, Patrick T. Martone, Silvia Matesanz, Shin-Ichiro S. Matsuzaki, Thomas J. Matthews, Iain Mccombe Matthews, Connie J. Maxwell, Kent P. Mcfarland, Brian J. Mcgill, Diane Marie Mcknight, Michael J. Mcwilliam, Jason Meador, Henning Meesenburg, Kristin Meier, Viesturs Melecis, Peter L. Meserve, Christoph F. J. Meyer, Anders Michelsen, Natali Olivia Roman Miiller, Marco Milardi, Nataliya Milchakova, Robert J. Miller, Jonathan Millett, Tom Moens, Luciano F. A. Montag, Jon Moore, Jörg Müller, Akhil Murali, Shauna Ann Murray, Isla H. Myers-Smith, Randall W. Myster, Masahiro Nakamura, Sasi Nayar, Francis Neat, James A. Nelson, Michael Paul Nelson, Boris P. Nikolov, Rym Nouioua, Collins Ayine Nsor, Michael O' Connor, Edward Adzesiwor Obodai, Amy Marie Offland, Romà Ogaya, Hisako Ogura, Thomas A. Okey, Julian D. Olden, Luiz Gustavo Rodrigues Oliveira-Santos, Jeffrey C. Oliver, Esben Moland Olsen, Vladimir G. Onipchenko, Daniel Oro, Dais Ozolins, Krzysztof Pabis, Bachisio Mario Padedda, Facundo X. Palacio, Alain Paquette, Sinta Trilestari Pardede, David M. Patersib, Sarah Pausina, Raphaël Pélissier, Steven C. Pennings, Josep Penuelas, Felipe Walter Pereira, Nivaldo Peroni, Sergio Picó, Francesca Pilotto, Hudson Tercio Pinheiro, Oscar Pizarro, Roberto Pizzolotto, Francesco Pomati, Paulo Santos Pompeu, Dominique Ponton, Eric Post, Nicolas Poulet, Juha Pöyry, Steven J. Presley, Herbert H. T. Prins, Pieter Provoost, Kathleen L. Prudic, Vignesh Punjayil, Petr Pyšek, Pascal Querner, Juan Pablo Quimbayo, Indar W. Ramnarine, Daniel C. Reed, Peter Bernard Reich, Suzanne M. Remillard, Cerren Richards, Anthony James Richardson, Itai Van Rijin, Victor H. Rivera-Monroy, Christian Rixen, Kevin Peter Robinson, Ricardo Rocha, Ricardo R. Rodrigues, Cassy Rodrigues, Bjørn De Roos, Denise De C. De Rossa-Feres, Loreta Rosselli, Peter Charles Rothlisberg, Ana Rubio, Lars G. Rudstam, Catalina S. Ruz, Nancy B. Rybicki, Gunther Van Ryckegem, Andrew L. Rypel, Jon P. Sadler, Victor Satoru Saito, Sofia Sal, Renato Portela Salomão, Nathan J. Sanders, Flavio A. M. Santos, Tiago Gomes Dos Santos, Swapan Kumar Sarker, Sara E. Scanga, Marcus Schaub, Jochen Schmidt, Inger Kappel Schmidt, Robert L. Schooley, Alfred Schultz, Alberto Scotti, Amanda Serpell-Stevens, Filipe C. Serrano, Elizabeth H. Shadwick, Matthew Shaft, Thomas W. Sherry, Erika Mayumi Shimabukuro, Jacek Siciński, Caya Sievers, Fernando Rodrigues Da Silva, Ana Carolina Da Silva, Juliana M. Silveira, Tadeu Siqueira, Arunkumar Kavidapadinjattathil Sivadasan, Prasad Theruvil Parambil Sivan, Agnija Skuja, Amalia L. Slaughter, Jasper A. Slingsby, Joseph R. Smith, Bruno Eleres Soares, Martin Solan, Flaviana Maluf Souza, Gabriel B. G. Souza, Joshua L. Sprague, Ulrich Stachow, J. John Stadt, Christopher D. Stallings, Radoslav Hristov Stanchev, Emily H. Stanley, Brian M. Starzomski, Jose Mauro Sterza, Maarten Stevens, F. Gary Stiles, Stefan Stoll, Rick D. Stuart-Smith, Yzel Rondon Súarez, Laura Super, Sarah R. Supp, Tapio Sutela, Iain M. Suthers, Anna Suuronen, Kerrie M. Swadling, Daniel K. Szydlowski, Hisatomo Taki, Sara Jeanne Snell Taylor, Pablo A. Tedesco, Nils Teichert, Akira Terui, Gary P. Thiede, Anne Thimonier, Oliver Thomas, Peter Allan Thompson, Simon Thorn, Jeremy S. Tiemann, Luís Felipe Toledo, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ignasi Torre, Marcos Adriano Tortato, Kumiko Totsu, Andrew Trant, Robert R. Twilley, Hirokazu Urabe, Pierre Valade, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Jan Vanaverbeke, Tiago Silveira Vasconcelos, Teppo Vehanen, Fábio Venturoli, Hans M. Verheye, Hendrik Jannes Wietse Vermeulen, Arne Verstraeten, Marcelo Vianna, Rui Vieira, João Paulo Santos Vieira-Alencar, Marc Vilella, Jean Ricardo Simões Vitule, Lien Van Vu, Robert B. Waide, Paige S. Warren, Joseph Paul Wayman, Sara L. Webb, Benjamin Weigel, Ellen A. R. Welti, Fritha West, Fulgor Westermann, Matthew A. Whalen, Ethan P. White, Claire E. Widdicombe, Richard Williams, Mark Williamson, Michael R. Willig, Sonja Wipf, Eric J. Woehler, Alje Woldering, Kerry D. Woods, Wu-Bing Xu, Ruthy Yahel, Zeren Yang, Kyle J. A. Zawada, Camila Zornosa-Torres, Assaf Zvuloni

Biological Sciences Faculty Publications

Motivation: Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database.

Main Types of Variables Included: The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised …

Ancestry-Dependent Immunologic And Prognostic Effects Characterize The Prostate Cancer Urinary Proteome, Annie Ha, Jaron Arbet, Zhuyu Qiu, Amanda Khoo, Brian P. Main, Meinusha Govindarajan, Matthew Waas, Stanley K. Liu, O. John Semmes, Julius O. Nyalwidhe, Paul C. Boutros, Thomas Kislinger

Leroy T. Canoles Jr. Cancer Research Center Faculty Publications

Urine is an attractive biomarker analyte for non-invasive longitudinal monitoring of health and disease, particularly for diseases of the genitourinary tract, like prostate and bladder cancer. The composition of an individual's urine reflects both genetic and lifestyle characteristics that differ across geographies and populations, like diet, hydration and other socio-economic factors. While men of African ancestry have elevated prostate cancer risk, it is unclear to what extent this influences urinary biomarkers. We therefore quantified the urinary proteomes of 329 localized prostate cancer patients: 135 self-identifying as White and 194 self-identifying as Black. We identified 110 proteins that significantly differed between …

Tidal Love Numbers For A Non-Rotating Two-Fluid Neutron Star: Interior Solution, Gregory G Jaurequi

Dissertations and Theses

We investigate the tidal Love numbers for a non-rotating dark matter admixed neutron star (NS). Tidal Love numbers, which quantify a star's response to the tidal field of a companion object, are an important feature in the gravitational wave (GW) signal and vary depending on the star’s equation of state and dark matter profiles. By determining how the internal properties of the NS affect the GW signal, we hope that improvements in gravitational wave detection will help constrain these parameters by providing additional data from neutron star mergers with other compact objects. To this end, we focus on solving the …

Childhood Betrayal Trauma And Suicidal Ideation: The Role Of Early Maladaptive Schemas And Interpersonal Problems, Christine Yost

Dissertations and Theses

Betrayal trauma (Freyd, 1996) is a specific form of trauma that occurs when a child is significantly harmed by someone they depend on or trust. Prior research has demonstrated that betrayal trauma is more strongly associated with adverse mental health outcomes than traumas lower in interpersonal betrayal, yet few studies have examined its relationship with suicidal ideation or identified mechanisms that explain this association. The present study tested a path model in a sample of 391 young adults aged 18-34 who endorsed suicidal ideation in the past year. The model examined whether specific early maladaptive schemas (emotional deprivation, social isolation/alienation, …

Comparative Analysis Of Estimation Techniques On Human Performance In Seek-And-Place Tasking, Adam J. Wehr

Graduate Thesis and Dissertation post-2024

Accurate parameter estimation is fundamental to statistical modeling, shaping the validity of inference, prediction, and decision-making. Although Maximum Likelihood Estimation (MLE) and Bayesian methods are well established theoretically, their performance relative to alternative estimators in small-sample, skewed-data contexts remains less clear. This thesis addresses this gap through a systematic evaluation of estimation techniques applied to human response time data from a controlled seek-and-place jigsaw puzzle task, where distributions are characteristically right-skewed.

A performance-modified lognormal model was developed to capture the relationship between task complexity and response times. Four estimation approaches were investigated: MLE, Method of Moments (MoM), Bayesian estimation under …

Domain-Constrained Clustering: A Two-Stage Framework For Muscle Fiber Type Identification, Fanchao Yi

Graduate Thesis and Dissertation post-2024

This dissertation introduces a novel Two-Stage Clustering Framework for the automated identification of human skeletal muscle fiber types using fluorescence microscopy image intensity data. By integrating two complementary clustering methods, this framework overcomes the subjectivity and labor-intensive nature of traditional manual methods, offering an objective and efficient solution for large-scale muscle physiology research. The initial framework combined Density Peaks Clustering (DPC) with a Gaussian Mixture Model employing a t-distribution (GMM-t). This version was validated by comparing its clustering results with manual counts at the individual subject level. We successfully applied this framework in two published studies \cite{brennan2020,hinkley2023}, demonstrating its practical …

Sparse Low-Rank Tensor Logistic Regression With Applications In Neuroimaging, Michael Hurtado

Graduate Thesis and Dissertation post-2024

Discriminant analysis techniques, while extensively studied for traditional datasets, have rarely been adapted to address the complexities of high-dimensional tensor data. Recent advances in tensor decomposition, as reviewed by Burch et al. (2025), highlight methods such as CP, Tucker, HOSVD, and t-SVD, which offer robust frameworks for handling multi-dimensional biomedical data, including neuroimaging. In this paper, we propose a novel approach that integrates low-rank regularization techniques with tensor structures to tackle high-dimensional matrix and tensor data. Building on the Multi-Projection Optimal Scoring Discriminant Analysis (ROSDA) method by Huang & Zhang (2020), which employs multi-directional projection pursuit for robust classification, our …

Robust Multiple Change Point Detection For Streaming Data, Randyll Pandohie

Graduate Thesis and Dissertation post-2024

The growing prevalence of high-frequency, high-dimensional data streams in domains such as finance, cybersecurity, and industrial monitoring has intensified the demand for real-time multiple change point detection methods. These methods are expected to identify distributional shifts as they occur while also determining the number and locations of change points—even in the presence of noise, outliers, and limited labeled data. Traditional batch-based approaches and many existing machine learning models fall short in streaming contexts due to their reliance on static datasets and sensitivity to contamination.

This thesis proposes a unified framework for robust multiple change point detection in streaming environments. The …

Exploring Adaptive University President Narratives To Generate Growth And Sustainability, Ryan Charles Weber

Theses and Dissertations

This mixed-methods study explores how university presidents leverage adaptive leadership principles and learning organization frameworks to generate institutional growth and sustainability in higher education. Through analysis of presidential narratives, the research examines the intersection of Heifetz et al.’s (2009) adaptive leadership theory and Senge’s (2006) five disciplines of learning organizations, revealing patterns in leadership communication that drive change. The study analyzed narratives from eight university presidents who demonstrated success through their institutions’ minimum 30% endowment growth over five years. Using thematic analysis and frequency counts, the research identified 198 references to learning organization disciplines, 90 adaptive leadership phases, and 100 …

In Re Marla C Martin, Northern District Of Illinois Bankruptcy Court

Historical and Topical Legal Documents

No abstract provided.

Marked By Valor: The “Lost” History Of The 6th United States Colored Troops, Heavy Artillery, Daniel William O’Sullivan

CGU Theses & Dissertations

“Marked by Valor: The ‘Lost’ History of the 6 th U.S.C.T., Heavy Artillery,” argues that the camaraderie of having been a Black Union soldier solidified a sub-culture of Black veterans and their families in Natchez, Mississippi, that cohered throughout the Reconstruction period using the tools and the affiliations first gained in slavery and strengthened during the soldiers’ time in the army. Underlying this narrative is an interpretation of Southern history that maintains that we cannot understand the events of the postwar period—not only for Black veterans, but to some extent all freed people—if we do not understand all that came …

Leveraging Gpt-4o For Automated Extraction Of Neural Projections From Scientific Literature, Rashmie Abeysinghe, Gorbachev Jowah, Licong Cui, Samden D Lhatoo, Guo-Qiang Zhang

Faculty, Staff and Student Publications

Sudden Unexpected Death in Epilepsy (SUDEP) is a major cause of death for epilepsy patients having uncontrolled seizures. Understanding the complex neural circuits within the central nervous system is crucial for understanding the mechanisms underlying cardiorespiratory regulation, particularly in the context of SUDEP. This study explores the potential of GPT-4o, a cutting-edge language model, to automate the extraction of neural projections from scientific literature. We developed prompts to extract neuroscientific structures, extract projections, and perform synonym harmonization. Applying the approach to four neuroscientific articles, the method extracted 205 projections. A random sample of 100 projections identified was handed over to …

Demystifying Misconceptions In Introductory Undergraduate Chemistry Education With 3d Printed Molecular Orbitals, Hiwot Endeshaw, Daniel J. O'Leary

Pomona Senior Theses

Spatial abilities are invaluable skills for the science, technology, engineering, and mathematics (STEM) subjects. However, women, people from low socioeconomic backgrounds, and ethnic minorities are more likely to have less developed spatial abilities, which is one of the many contributing factors for the lack of diversity in STEM subjects like chemistry. Teaching spatial skills to undergraduate chemistry students may address this issue and help increase the diversity of students who go on to continue their education in the subject. 3D printing technology in higher education has exploded in recent years, presenting a unique opportunity to teach “hard to grasp” concepts …

Modified N-Heterocyclic Carbene Catalysts For Polyurethane Synthesis, Charise D. Young

Pomona Senior Theses

Polyurethanes are widely used polymers synthesized from diisocyanate and diol molecules. They are ubiquitous polymeric materials with important industrial applications. Their increasing market value prompts the need for selective and efficient production which can be achieved through N-Heterocyclic carbene (NHC) catalysis. N-heterocyclic carbenes are heterocyclic molecules containing a carbene atom and at least one nitrogen adjacent to the carbene center. The nitrogen substituents on the adjacent nitrogen play an important role in influencing their steric and electronic properties and resultant reactivity.^1,2 There is a lack of a comprehensive understanding of the steric and electronic properties of NHCs and how …

Huchum: The Legacy Of Fire Suppression, Indigenous Land Management, And Media Representation, Carolyn Coyne

Pomona Senior Theses

In my thesis, I examine how various forms of news media from the 1900s to present day in Ohlone territory have framed a particular hegemonic ideology around fire that matches early colonial journal entries – an ideology that is fueled by fear, sensationalism, and exclusion and directly commits violence against the Ohlone people. I investigate this time period because this is when modern news corporations, like The New York Times, rose into prominence. Specifically, I question how media representations of fire inform regulations over controlled burns; what are the similarities in discourse between media framing and policy? What tactics are …

The Chthulucene Is Colonial Ecology: Ontology And Ethics In Anti-Colonial Environmental Theory, Aaron Morgan

Pomona Senior Theses

This thesis interrogates the movement from ontology (what things are) to ethics (what one should do) in the context of environmental theory and settler colonialism. From new materialism to posthumanism, theorists within the “ontological turn” aim to overcome the anti-ecological foundations of modern philosophy (e.g., dualisms of nature and society, matter and meaning, body and mind). Contra dualism, critical environmental theorists argue that relational ontologies can produce more ecologically responsible ethical frameworks, affects, and values. In this thesis, I focus on appeals to climate anxiety and ecological urgency as two common discursive formations that function to redirect philosophical accounts of …

Expression In Spinoza’S Metaphysics Of Attributes, Emilio Esquivel Marquez

Pomona Senior Theses

Spinoza is famous for his insistence on the fundamental unity of all things, but he never explains how diverse metaphysical elements can join up to form a unified substance. I argue that this gap in his argument is not an obstacle for Spinoza's systematic metaphysics: although he does not justify the unity-variety relation in strictly rationalist terms, his system is founded on a basic posit that guarantees their union. I describe this central posit, the concept of “expression,” through a detailed reading of Spinoza’s pivotal argument for the diversity of attributes in Ethics 1P10S. I propose that Spinoza’s theory of …

Art As Witness: Carrying Christian Iconographies In The Works Of Henry Ossawa Tanner During The Gilded Age To Contemporary Autobiographical Testimonial Art, Ziona King

Pomona Senior Theses

Culminated in a solo exhibition of three works titled the prodigal daughter and The Great High Priest, Baptism, and The Lord of Hosts, this research explores the implications of the Christian methodologies and iconographies in the works of Henry Ossawa Tanner to influence testimonial artwork containing personal Christian iconographies of water baptism, spiritual encounter in everyday life, the lion of Judah, bowls, and more interpretive motifs.

Disrupting The Timeline: Challenging Notions Of A Singular, Linear Early Muslim Historiography, Grayson D. Shaw

Pomona Senior Theses

Few historical events have received the same attention in the formative years of Islam as the so-called “‘Abbāsid Revolution” in 132 AH/750 CE. In both the medieval and modern contexts, this event has been recognized as a monumental formation from which the rest of Islamic history comes downstream from. Problematically, there are no cohesive historical sources from the losers of this conflict; the Umayyads. Utilizing numismatic and architectural evidence, I argue that the alleged rupture between the Umayyads and their ‘Abbāsid successors is overblown by historiography two centuries after the fact. Then, I further analyze what this continuity means for …

Samuel Štefan Osuský’S Critique Of Church And Society In The Face Of Totalitarianism, Michal Valčo, Katarína Valčová

Occasional Papers on Religion in Eastern Europe

This paper provides a systematic review analysis of the relevant works of Slovak philosopher and theologian Samuel Štefan Osuský (1888-1975), focusing on his critical perspective concerning the responses of the Church (mainly the Evangelical Lutheran Church of Augsburg Confession in Slovakia) and society to the ideological and political dangers of fascism and Nazism in 20th-century Central Europe. Drawing on his major writings, including his prophetic 1937 lecture "Filozofia boľševizmu, fašizmu a hitlerizmu" [The Philosophy of Bolshevism, Fascism, and Hitlerism] and the courageous 1942 "Pastiersky list k židovskej otázke" [Pastoral Letter on the Jewish Question], we explore Osuský’s diagnosis of institutional …

Population Dynamics Of White-Tailed Deer In A Multi-Predator, Multi-Prey Context In Northern Idaho, Elizabeth J. Painter-Flores

Graduate Student Theses, Dissertations, & Professional Papers

My dissertation was motivated by a fundamental management question. If a manager wants to increase the population of species A, how will it affect ungulate species B and C, and predator species D and E, and which populations can be managed to support species A’s success? This question is pertinent for both predators and prey, and in northern Idaho, harvest is used to not only manage populations in an ecological sense but also as a service to the public in the form of hunting opportunities. Understanding these interactions will benefit managers in their decision-making process and ensure the long-term stability …

Climate Goodbyes: Reporting On Loss, Change And The Human Response In Montana, Madeline Jorden

Graduate Student Theses, Dissertations, & Professional Papers

This portfolio explores how climate-driven environmental change intersects with long-standing tensions over natural resource management, tribal sovereignty, and rural identity in Montana. It consists of three stories: a historically low water year at Flathead Lake that intensified disputes between tribal dam operators and non-tribal waterfront homeowners; the first confirmed presence of invasive smallmouth bass in the Bitterroot River, signaling warming stream conditions and ecological disruption; and a political narrative from Colstrip, where coal industry workers cling to promises of revival amid economic and regulatory decline. Each piece illustrates how climate change acts not only as an environmental force but also …

Space Use, Habitat Selection, And Flight Behavior Of Eagles Across Northwestern North America, Stephen Bernard Lewis

Graduate Student Theses, Dissertations, & Professional Papers

Understanding how behavioral strategies shape movement, space use, and risk exposure is essential for conserving long-lived raptors. In this dissertation, I use high-resolution GPS telemetry from bald eagles (Haliaeetus leucocephalus) and golden eagles (Aquila chrysaetos) to examine how behavioral state, environmental context, and temporal dynamics structure raptor ecology across Alaska, British Columbia, and the western United States.

Chapter 1 used random forest classification of movement data from 43 bald eagles and 94 golden eagles to identify territorial, nesting, and floater seasons with high accuracy. Floaters comprised roughly one-third of all seasons in both species, and many individuals exhibited consistent state-specific …

Ecology-Driven Machine Learning For Predicting Risk Of Spread For Aquatic Invasive Species., Leif Eric Howard

Graduate Student Theses, Dissertations, & Professional Papers

Effective management of aquatic invasive species (AIS) requires predictive tools that leverage environmental and ecological data to forecast spread into uninvaded areas. However, species distribution models (SDMs) often struggle to capture key invasion processes such as dispersal, propagule pressure, and biotic interactions. This thesis integrates ecological, dispersal, and environmental predictors within a machine learning framework to enhance AIS risk prediction and model transferability across space.

In Chapter 2, 61 novel predictors were developed for 2,203 Minnesota lakes to model zebra mussel (Dreissena polymorpha) occurrence, incorporating variables related to propagule pressure (e.g., boat visitation), community composition (e.g., fish species …