Digital Commons Network^™

Data-Driven Air Quality And Environmental Evaluation For Cattle Farms, Jennifer Hu, Rushikesh Jagtap, Rishikumar Ravichandran, Chitra Priyaa Sathya Moorthy, Nataliya Sobol, Jane Wu, Jerry Gao

Faculty Research, Scholarly, and Creative Activity

The expansion of agricultural practices and the raising of animals are key contributors to air pollution. Cattle farms contain hazardous gases, so we developed a cattle farm air pollution analyzer to count the number of cattle and provide comprehensive statistics on different air pollutant concentrations based on severity over various time periods. The modeling was performed in two parts: the first stage focused on object detection using satellite data of farm images to identify and count the number of cattle; the second stage predicted the next hour air pollutant concentration of the seven cattle farm air pollutants considered. The output …

Bacterial Contamination Levels And Brand Perception Of Sachet Water: A Case Study In Some Nigerian Urban Neighborhoods, Imokhai T. Tenebe, Eunice O. Babatunde, Chinonso C. Eddy-Ugorji, Egbe Etu E. Etu, Nkpa M. Ogarekpe, Chikodinaka V. Ekeanyanwu, Oladapo A. Diekola, Oluwarotimi S. Oladele, Obiora B. Ezeudu

Faculty Research, Scholarly, and Creative Activity

Sachet water (SW) is a major source of drinking in most Nigerian homes, thus making it a possible conveyance medium for health risks due to contamination if persist rather than for replenishment of the body. This study collected SW from three busy neighborhoods in South-West Nigeria and investigated for the presence of indicator bacteria (Escherichia coli (E. coli), Total Coliform (TC), Total Heterophilic Bacteria (THB), Staphylococcus (Staph)) and some physio-chemical parameters (total dissolved solids (TDS), pH, electrical conductivity (EC), and salinity). Multi-variable and exploratory statistical methods were applied to the results to determine correlations between bacterial contamination levels and perceived …

Maternal Adverse Childhood Experiences, Child Mental Health, And The Mediating Effect Of Maternal Depression: A Cross-Sectional, Population-Based Study In Rural, Southwestern Uganda, Christine E. Cooper-Vince, Bernard Kakuhikire, Charles Baguma, Justin D. Rasmussen, David Bangsberg, Multiple Additional Authors

OHSU-PSU School of Public Health Faculty Publications and Presentations

Objectives

This study aimed to examine the intergenerational effects of maternal adverse childhood experiences (ACEs) and child mental health outcomes in rural Uganda, as well as the potentially mediating role of maternal depression in this pathway. Additionally, we sought to test the extent to which maternal social group membership attenuated the mediating effect of maternal depression on child mental health.

Methods

Data come from a population-based cohort of families living in the Nyakabare Parish, a rural district in southwestern Uganda. Between 2016 and 2018, mothers completed surveys about childhood adversity, depressive symptoms, social group membership, and their children's mental health. …

Final Doctoral Recital, Manaka Matsumoto

Electronic Dissertations and Theses, 2010-current

violin, Toru Takemitsu, Franz Schubert, Kaija Saariaho, Sergei Prokofiev

Translational Studies Using The Malt1 Inhibitor (S)-Mepazine To Induce Treg Fragility And Potentiate Immune Checkpoint Therapy In Cancer, Mauro Di Pilato, Yun Gao, Yi Sun, Amina Fu, Carina Grass, Thomas Seeholzer, Regina Feederle, Irina Mazo, Samuel W Kazer, Kevin Litchfield, Ulrich H Von Andrian, Thorsten R Mempel, Russell W Jenkins, Daniel Krappmann, Peter Keller

Faculty, Staff and Student Publications

Introduction

Regulatory T cells (Tregs) play a critical role in the maintenance of immune homeostasis but also protect tumors from immune-mediated growth control or rejection and pose a significant barrier to effective immunotherapy. Inhibition of MALT1 paracaspase activity can selectively reprogram immune-suppressive Tregs in the tumor microenvironment to adopt a proinflammatory fragile state, which offers an opportunity to impede tumor growth and enhance the efficacy of immune checkpoint therapy (ICT).

Methods

We performed preclinical studies with the orally available allosteric MALT1 inhibitor (S)-mepazine as a single-agent and in combination with anti-programmed cell death protein 1 (PD-1) ICT to …

Interleukin-33 Facilitates Liver Regeneration Through Serotonin-Involved Gut-Liver Axis, Yankai Wen, Christoph Emontzpohl, Long Xu, Constance L Atkins, Jong-Min Jeong, Yang Yang, Kangho Kim, Chuan Wu, Shizuo Akira, Cynthia Ju

Faculty, Staff and Student Publications

BACKGROUND AND AIMS: Insufficient liver regeneration causes post-hepatectomy liver failure and small-for-size syndrome. Identifying therapeutic targets to enhance hepatic regenerative capacity remains urgent. Recently, increased IL-33 was observed in patients undergoing liver resection and in mice after partial hepatectomy (PHx). The present study aims to investigate the role of IL-33 in liver regeneration after PHx and to elucidate its underlying mechanisms.

APPROACH AND RESULTS: We performed PHx in IL-33 -/- , suppression of tumorigenicity 2 (ST2) -/- , and wild-type control mice, and found deficiency of IL-33 or its receptor ST2 delayed liver regeneration. The insufficient liver regeneration could be …

Major Differences In Transcriptional Alterations In Dorsal Root Ganglia Between Spinal Cord Injury And Peripheral Neuropathic Pain Models, Raquel Cuevas-Diaz Duran, Yong Li, Anibal Garza Carbajal, Yanan You, Carmen W Dessauer, Jiaqian Wu, Edgar T Walters

Faculty, Staff and Student Publications

Chronic, often intractable, pain is caused by neuropathic conditions such as traumatic peripheral nerve injury (PNI) and spinal cord injury (SCI). These conditions are associated with alterations in gene and protein expression correlated with functional changes in somatosensory neurons having cell bodies in dorsal root ganglia (DRGs). Most studies of DRG transcriptional alterations have utilized PNI models where axotomy-induced changes important for neural regeneration may overshadow changes that drive neuropathic pain. Both PNI and SCI produce DRG neuron hyperexcitability linked to pain, but contusive SCI produces little peripheral axotomy or peripheral nerve inflammation. Thus, comparison of transcriptional signatures of DRGs …

Therapeutic Potential Of Tumor Treating Fields For Malignant Brain Tumors, Youyou Zhou, Xiaoqing Xing, Jinyun Zhou, Han Jiang, Peili Cen, Chentao Jin, Yan Zhong, Rui Zhou, Jing Wang, Mei Tian, Hong Zhang

Faculty, Staff and Student Publications

BACKGROUND: Malignant brain tumors are among the most threatening diseases of the central nervous system, and despite increasingly updated treatments, the prognosis has not been improved. Tumor treating fields (TTFields) are an emerging approach in cancer treatment using intermediate-frequency and low-intensity electric field and can lead to the development of novel therapeutic options.

RECENT FINDINGS: A series of biological processes induced by TTFields to exert anti-cancer effects have been identified. Recent studies have shown that TTFields can alter the bioelectrical state of macromolecules and organelles involved in cancer biology. Massive alterations in cancer cell proteomics and transcriptomics caused by TTFields …

Elevated Bile Acids Are Associated With Left Ventricular Structural Changes In Biliary Atresia, Manpreet K Virk, Muhammad Umair M Mian, Dalia A Bashir, John K Wilkes, Tobias Schlingman, Saul Flores, Curtis Kennedy, Fong Lam, Ayse A Arikan, Trung Nguyen, Krupa Mysore, Nhu Thao Nguyen Galvan, Jorge Coss-Bu, Saul J Karpen, Sanjiv Harpavat, Moreshwar S Desai

Faculty, Staff and Students Publications

BACKGROUND: In children with biliary atresia (BA), pathologic structural changes within the heart, which define cirrhotic cardiomyopathy, are associated with adverse perioperative outcomes. Despite their clinical relevance, little is known about the pathogenesis and triggers of pathologic remodeling. Bile acid excess causes cardiomyopathy in experimental cirrhosis, but its role in BA is poorly understood.

METHODS: Echocardiographic parameters of left ventricular (LV) geometry [LV mass (LVM), LVM indexed to height, left atrial volume indexed to BSA (LAVI), and LV internal diameter (LVID)] were correlated with circulating serum bile acid concentrations in 40 children (52% female) with BA listed for transplantation. A …

Hemato-Vascular Specification Requires Arnt1 And Arnt2 Genes In Zebrafish Embryos, Hailey E Edwards, Mary Jane Elizalde, Jaclyn P Souder, Daniel A Gorelick

Faculty, Staff and Students Publications

During embryonic development, a subset of cells in the mesoderm germ layer are specified as hemato-vascular progenitor cells, which then differentiate into endothelial cells and hematopoietic stem and progenitor cells. In zebrafish, the transcription factor npas4l (cloche) is required for the specification of hemato-vascular progenitor cells. However, it is unclear whether npas4l is the sole factor at the top of the hemato-vascular specification cascade. Here, we show that arnt1 and arnt2 genes are required for hemato-vascular specification. We found that arnt1;arnt2 double mutant zebrafish embryos, but not arnt1 or arnt2 single mutants, lack blood cells and most endothelial cells. arnt1/2 …

Immune Profiling Of Adeno-Associated Virus Response Identifies B Cell-Specific Targets That Enable Vector Re-Administration In Mice, Maria Chen, Boram Kim, Maria I Jarvis, Samantha Fleury, Shuyun Deng, Shirin Nouraein, Susan Butler, Sangsin Lee, Courtney Chambers, H Courtney Hodges, Jerzy O Szablowski, Junghae Suh, Omid Veiseh

Faculty, Staff and Students Publications

Adeno-associated virus (AAV) vector-based gene therapies can be applied to a wide range of diseases. AAV expression can last for months to years, but vector re-administration may be necessary to achieve life-long treatment. Unfortunately, immune responses against these vectors are potentiated after the first administration, preventing the clinical use of repeated administration of AAVs. Reducing the immune response against AAVs while minimizing broad immunosuppression would improve gene delivery efficiency and long-term safety. In this study, we quantified the contributions of multiple immune system components of the anti-AAV response in mice. We identified B-cell-mediated immunity as a critical component preventing vector …

Functional Screening Of Lysosomal Storage Disorder Genes Identifies Modifiers Of Alpha-Synuclein Neurotoxicity, Meigen Yu, Hui Ye, Ruth B De-Paula, Carl Grant Mangleburg, Timothy Wu, Tom V Lee, Yarong Li, Duc Duong, Bridget Phillips, Carlos Cruchaga, Genevera I Allen, Nicholas T Seyfried, Ismael Al-Ramahi, Juan Botas, Joshua M Shulman

Faculty, Staff and Students Publications

Heterozygous variants in the glucocerebrosidase (GBA) gene are common and potent risk factors for Parkinson's disease (PD). GBA also causes the autosomal recessive lysosomal storage disorder (LSD), Gaucher disease, and emerging evidence from human genetics implicates many other LSD genes in PD susceptibility. We have systemically tested 86 conserved fly homologs of 37 human LSD genes for requirements in the aging adult Drosophila brain and for potential genetic interactions with neurodegeneration caused by α-synuclein (αSyn), which forms Lewy body pathology in PD. Our screen identifies 15 genetic enhancers of αSyn-induced progressive locomotor dysfunction, including knockdown of fly homologs of GBA …

Oriented Crossover In Genetic Algorithms For Computer Networks Optimization, Furkan Rabee, Zahir M. Hussain

Research outputs 2022 to 2026

Optimization using genetic algorithms (GA) is a well-known strategy in several scientific disciplines. The crossover is an essential operator of the genetic algorithm. It has been an active area of research to develop sustainable forms for this operand. In this work, a new crossover operand is proposed. This operand depends on giving an elicited description for the chromosome with a new structure for alleles of the parents. It is suggested that each allele has two attitudes, one attitude differs contrastingly with the other, and both of them complement the allele. Thus, in case where one attitude is good, the other …

Immunotherapeutic Approach To Reduce Senescent Cells And Alleviate Senescence-Associated Secretory Phenotype In Mice, Niraj Shrestha, Mark Foster, Lynne Marsala, Pamela Wong, Celia C Cubitt, Jennifer A Foltz, Jennifer Tran, Timothy Schappe, Melissa M Berrien-Elliott, Todd A Fehniger, Et Al.

2020-Current year OA Pubs

Accumulation of senescent cells (SNCs) with a senescence-associated secretory phenotype (SASP) has been implicated as a major source of chronic sterile inflammation leading to many age-related pathologies. Herein, we provide evidence that a bifunctional immunotherapeutic, HCW9218, with capabilities of neutralizing TGF-β and stimulating immune cells, can be safely administered systemically to reduce SNCs and alleviate SASP in mice. In the diabetic db/db mouse model, subcutaneous administration of HCW9218 reduced senescent islet β cells and SASP resulting in improved glucose tolerance, insulin resistance, and aging index. In naturally aged mice, subcutaneous administration of HCW9218 durably reduced the level of SNCs and …

Distinct Effects Of Two Hearing Loss-Associated Mutations In The Sarcomeric Myosin Myh7b, Lindsey A Lee, Samantha K Barrick, Ada E Buvoli, Jonathan Walklate, W Tom Stump, Michael Geeves, Michael J Greenberg, Leslie A Leinwand

2020-Current year OA Pubs

For decades, sarcomeric myosin heavy chain proteins were assumed to be restricted to striated muscle where they function as molecular motors that contract muscle. However, MYH7b, an evolutionarily ancient member of this myosin family, has been detected in mammalian nonmuscle tissues, and mutations in MYH7b are linked to hereditary hearing loss in compound heterozygous patients. These mutations are the first associated with hearing loss rather than a muscle pathology, and because there are no homologous mutations in other myosin isoforms, their functional effects were unknown. We generated recombinant human MYH7b harboring the D515N or R1651Q hearing loss-associated mutation and studied …

Monitoring The Birds And The Bees: Environmental Dna Metabarcoding Of Flowers Detects Plant–Animal Interactions, Joshua P. Newton, Philip W. Bateman, Matthew J. Heydenrych, Joshua H. Kestel, Kingsley W. Dixon, Kit S. Prendergast, Nicole E. White, Paul Nevill

Research outputs 2022 to 2026

Animal pollinators are vital for the reproduction of ~90% of flowering plants. However, many of these pollinating species are experiencing declines globally, making effective pollinator monitoring methods more important than ever before. Pollinators can leave DNA on the flowers they visit, and metabarcoding of these environmental DNA (eDNA) traces provides an opportunity to detect the presence of flower visitors. Our study, collecting flowers from seven plant species with diverse floral morphologies, for eDNA metabarcoding analysis, illustrated the value of this novel survey tool. eDNA metabarcoding using three assays, including one developed in this study to target common bush birds, recorded …

Direct Cardiac Reprogramming: A New Technology For Cardiac Repair, Paige E Brlecic, Clark A Bonham, Todd K Rosengart, Megumi Mathison

Faculty, Staff and Students Publications

Cardiovascular disease is one of the leading causes of morbidity and mortality worldwide, with myocardial infarctions being amongst the deadliest manifestations. Reduced blood flow to the heart can result in the death of cardiac tissue, leaving affected patients susceptible to further complications and recurrent disease. Further, contemporary management typically involves a pharmacopeia to manage the metabolic conditions contributing to atherosclerotic and hypertensive heart disease, rather than regeneration of the damaged myocardium. With modern healthcare extending lifespan, a larger demographic will be at risk for heart disease, driving the need for novel therapeutics that surpass those currently available in efficacy. Transdifferentiation …

Variant-Specific Therapy For Long Qt Syndrome Type 3, Oliver M Moore, Lauren E Dorn, Xander H T Wehrens

Faculty, Staff and Students Publications

No abstract provided.

Adad2 Functions In Spermiogenesis And Pirna Biogenesis In Mice, Yonggang Lu, Ippei Nagamori, Hisato Kobayashi, Kanako Kojima-Kita, Kenjiro Shirane, Hsin-Yi Chang, Toru Nishimura, Takayuki Koyano, Zhifeng Yu, Julio M Castañeda, Makoto Matsuyama, Satomi Kuramochi-Miyagawa, Martin M Matzuk, Masahito Ikawa

Faculty, Staff and Students Publications

BACKGROUND: Adenosine deaminase domain containing 2 (ADAD2) is a testis-specific protein composed of a double-stranded RNA binding domain and a non-catalytic adenosine deaminase domain. A recent study showed that ADAD2 is indispensable for the male reproduction in mice. However, the detailed functions of ADAD2 remain elusive.

OBJECTIVES: This study aimed to investigate the cause of male sterility in Adad2 mutant mice and to understand the molecular functions of ADAD2.

MATERIALS AND METHODS: Adad2 homozygous mutant mouse lines, Adad2

RESULTS: Adad2–/– and Adad2Δ/Δ mice exhibit male-specific sterility due to abnormal spermiogenesis. ADAD2 interacts with multiple RNA-binding proteins involved in …

Healthcare Workers’ Perceptions, Practices, And Knowledge Of Trauma-Informed Care In The Hospital Setting, Emily Gayle Tippens

Electronic Theses and Dissertations

Psychological trauma has become a pervasive term throughout the mental health field but has been slow to gain momentum in the healthcare field. Hospitals have always been a place where people with mental health concerns or psychosis seek help, but hospitals have historically not implemented a trauma-informed care (TIC) approach. As the mental health crisis continues to become more detrimental, trauma-informed care skills will become more valuable. This study measured the knowledge, opinions, perceptions healthcare professionals in West Texas have regarding trauma-informed care. This study hypothesized that healthcare workers in West Texas would benefit from TIC training. This study hypothesized …

Narratives Of Existence And The Narrative Existence: Ontological Unity In The Border Trilogy And Quantum Theory, Rebecca Leigh Mcintosh

Electronic Theses and Dissertations

Because the humanities and the sciences approach philosophical questions in contrasting ways, the study of literature and the study of physical science are often viewed as unrelated realms of scholarly inquiry. Science aims to provide a methodological approach for gathering knowledge about the world, while the humanities focus on criticism or analysis of cultural artifacts. However, even though the conceptual frameworks applied in scientific study and literary study are often incompatible or remarkably divergent, their methods for conceptualizing and transmitting ideas are the same, for humanity understands the world and experience of this world through narratives composed of referential metaphors. …

Nutritional Ecology Of The Western Cottonmouth (Agkistrodon Piscivorus Leucostoma), Jason Ortega

Graduate Theses and Dissertations

Nutritional ecology aims to understand the factors that shape the diets of animals, how these ingested meals are processed, and how the assimilated nutrients are used to shape an organism’s interactions with its environment. As environmental parameters are altered due to anthropogenic changes, the availability and quality of prey may be altered. The alteration of the nutritional landscape can be devastating to nutritional specialists, yet generalist predators may be able to cope with these changes. The western cottonmouth (Agkistrodon piscivorus leucostoma) is a unique semiaquatic pitviper that can both forage along the land-water interface and in upland habitat when faced …

Effects Of Land Use On Soil Microbial Communities In Tropical Montane Forests Of Malaysian Borneo, Yang Kai Tang

Graduate Theses and Dissertations

Land use, such as logging and forest conversion to agriculture, can modify soil physicochemical and biological properties, and affect soil health. To understand how land use change can impact soil properties and canopy structure, we used a land use gradient in Malaysian Borneo consisting of six sites, including old growth forests, mixed forests, and agriculture fields. Specifically, we aimed to answer the following questions: (1) How do soil physicochemical properties vary across land use types? (2) Does bacterial diversity and composition vary across different land use types? (3) Does fungal diversity and composition vary across different land use types? We …

Evaluating The Efficacy Of The Christian Reformational Transcendental Model Of Art Criticism As A Literary Theory Through Albert Camus’S The Stranger, Elizabeth Miller

Electronic Theses and Dissertations

The subfield of art criticism and theory within Christian reformational philosophy, a descendent of the neo-Calvinist theology developed through the work of Dutch Reformer Abraham Kuyper and others, is becoming increasingly diverse. Recently, scholars such as Leland Ryken, Glenda Faye Mathes, and Philip Graham Ryken have built upon twentieth-century theologian Francis Schaeffer’s worldview approach by popularizing a transcendental model of art criticism, an approach that applies the transcendentals of truth, goodness, and beauty to works of art. However, the transcendentals, while widely discussed in the fields of philosophy, theology, and, to a lesser extent, art theory, have not been explicitly …

TíNh ThốNg NhấT Trong Sự Đa DạNg: Hanoi International Fellowship Ethnography, Ariel Marie Bloomer

Electronic Theses and Dissertations

Hanoi International Fellowship (HIF) is a multinational, multiethnic International Church (IC) in Hanoi, Vietnam. This thesis investigates how HIF constitutes unity among such lived diversity in its congregation. Chapter one reviews existing literature and provides the methodology of the study. Chapter two investigates where unity and diversity are present in HIF, focusing specifically on its mission and values, ministries, and leadership. Chapter three provides a theological basis for unity in diversity. Chapter four presents the research findings from this study. Lastly, Chapter five expresses the study’s limitations, summarizes the findings, offers suggestions to HIF and other Christian communities, recommends future …

Mental Confidence In Alzheimer's Disease, Harrison Adams

Electronic Theses and Dissertations

A simple symptom like forgetfulness can lead to a gradual, subtle decline in the individual’s sense of identity. In dementia, self-efficacy is the foundation that allow individual to prolong their capacity of independence and identity. Alzheimer’s disease (AD) is the most prominent form of dementia with tens of millions in the world currently living with Alzheimer’s disease. AD is most often associated with impaired memory, confusion, language impairment, and unpredictable, agitated, aggressive, and paranoid behavior. While there are many studies examining the quality of life in individuals with AD, there are fewer investigating the psychological effects of AD on the …

Diffseer: Difference-Based Dynamic Weighted Graph Visualization, Xiaolin Wen, Yong Wang, Meixuan Wu, Fengjie Wang, Xuanwu Yue, Qiaomu Shen, Yuxin Ma, Min Zhu

Research Collection School Of Computing and Information Systems

Existing dynamic weighted graph visualization approaches rely on users’ mental comparison to perceive temporal evolution of dynamic weighted graphs, hindering users from effectively analyzing changes across multiple timeslices. We propose DiffSeer, a novel approach for dynamic weighted graph visualization by explicitly visualizing the differences of graph structures (e.g., edge weight differences) between adjacent timeslices. Specifically, we present a novel nested matrix design that overviews the graph structure differences over a time period as well as shows graph structure details in the timeslices of user interest. By collectively considering the overall temporal evolution and structure details in each timeslice, an optimization-based …

Disruption Of Play Behavior Influences Development Of Caution In Juvenile Ground Squirrels, William Ryan

Master's Theses

Play behavior is ubiquitous among young mammals and has a variety of important influences on early development. I evaluated possible influences of social play behavior on the development of temperament in juvenile Belding’s ground squirrels (Urocitellus beldingi), using the caution/boldness spectrum as a measure of temperament. I disrupted the play behavior of juvenile U. beldingi by walking toward juveniles at play until the play interactions stopped. I used undisrupted juveniles and juveniles whose non-play behavior was disrupted at regular intervals as controls. Caution was measured with behavioral tests during which a human intruder walked toward a squirrel and recorded the …

Discrimination And Cognitive Failures In Singapore And The Us: An Investigation Of Between- And Within-Persons Associations Through Multilevel Modelling, Nadyanna Binte Mohamed Majeed, K. T. A. Sandeeshwara Kasturiratna, Verity Y. Q. Lua, Mingyao Li, Andree Hartanto

Research Collection School of Social Sciences

Experiencing everyday discrimination can have a significant negative impact on an individual’s wellbeing. While much attention has been paid to the physical and mental health consequences of discrimination, less is known about how discrimination can affect cognitive health, and most existing work has been conducted in laboratory settings where participants recall discrimination retrospectively. Given the artificial environment and susceptibility to recall bias in such procedures, the current study utilised two daily diary studies, consisting of young adults in Singapore (Study 1; N = 484) and midlife adults from the US (Study 2; N = 3577), to examine the association between …

No Destination: Queering Mobility Through The Virtuality Of Movement, Orlando Woods

Research Collection College of Integrative Studies

This paper advances the epistemological potential that exists at the nexus of queer theory and mobilities research. It aims to queer mobility by rejecting the idea of the destination and embracing the virtuality of movement instead. In doing so, it draws on the queer symbolism of the closet and the cruise to highlight the heteronormative framing that has come to define and constrain the new mobilities paradigm. Arguing that anybody has the capacity to be “queer”, it calls for a redefinition of the subject and an exploration of the world-making possibilities that emerge when the virtuality of movement is foregrounded.