Digital Commons Network^™

An Empirical Analysis Of Predictive Machine Learning Algorithms On High-Dimensional Microarray Cancer Data, Jo A. Bill

Theses

This research evaluates pattern recognition techniques on a subclass of big data where the dimensionality of the input space p is much larger than the number of observations n. Seven gene-expression microarray cancer datasets, where the ratio κ = n/p is less than one, were chosen for evaluation. The statistical and computational challenges inherent with this type of high-dimensional low sample size (HDLSS) data were explored. The capability and performance of a diverse set of machine learning algorithms is presented and compared. The sparsity and collinearity of the data being employed, in conjunction with the complexity of the algorithms studied, …

Detecting, Modeling, And Predicting User Temporal Intention, Hany M. Salaheldeen

Computer Science Theses & Dissertations

The content of social media has grown exponentially in the recent years and its role has evolved from narrating life events to actually shaping them. Unfortunately, content posted and shared in social networks is vulnerable and prone to loss or change, rendering the context associated with it (a tweet, post, status, or others) meaningless. There is an inherent value in maintaining the consistency of such social records as in some cases they take over the task of being the first draft of history as collections of these social posts narrate the pulse of the street during historic events, protest, riots, …

Fault Detection And Diagnostics Of An Hvac Sub-System Using Adaptive Resonance Theory Neural Networks, Christian Birk Jones

Mechanical Engineering ETDs

The commercial building sector consumed about 20% of the total primary energy in the U.S. in 2008. A significant yet avoidable portion of the energy consumption is due to inefficient system operations. The inefficiencies can be attributed to degrading HVAC sub-systems, and undetected abnormal conditions. Recognition and remediation of these conditions through advanced data analytics can reduce energy consumption by 5% to 20%. This could save about $9 billion in utility costs in the U.S. alone. Modern buildings are constantly sending messages in the form of sensor data. However, this data is only as good as the system that collects …

Hybrid Statistical Data Mining Framework For Multi-Commodity Fixed Charge Network Flow Problem, Anurag A. Ladage

Theses

This paper presents a new approach to analyze the network structure in multi-commodity fixed charge network flow problems (MCFCNF). This methodology uses historical data produced from repeatedly solving the traditional MCFCNF mathematical model as input for the machine-learning framework. Further, we reshape the problem as a binary classification problem and employ machine-learning algorithms to predict network structure. This predicted network structure is further used as an initial solution for our mathematical model. The quality of the initial solution generated is judged on the basis of predictive accuracy, feasibility and reduction in solving time.

Homogeneous Spiking Neuromorphic System For Real-World Pattern Recognition, Xinyu Wu, Vishal Saxena, Kehan Zhu

Electrical and Computer Engineering Faculty Publications and Presentations

A neuromorphic chip that combines CMOS analog spiking neurons and memristive synapses offers a promising solution to brain-inspired computing, as it can provide massive neural network parallelism and density. Previous hybrid analog CMOS-memristor approaches required extensive CMOS circuitry for training, and thus eliminated most of the density advantages gained by the adoption of memristor synapses. Further, they used different waveforms for pre and post-synaptic spikes that added undesirable circuit overhead. Here we describe a hardware architecture that can feature a large number of memristor synapses to learn real-world patterns. We present a versatile CMOS neuron that combines integrate-and-fire behavior, drives …

Reliable Patch Trackers: Robust Visual Tracking By Exploiting Reliable Patches, Yang Li, Jianke Zhu, Steven C. H. Hoi

Research Collection School Of Computing and Information Systems

Most modern trackers typically employ a bounding box given in the first frame to track visual objects, where their tracking results are often sensitive to the initialization. In this paper, we propose a new tracking method, Reliable Patch Trackers (RPT), which attempts to identify and exploit the reliable patches that can be tracked effectively through the whole tracking process. Specifically, we present a tracking reliability metric to measure how reliably a patch can be tracked, where a probability model is proposed to estimate the distribution of reliable patches under a sequential Monte Carlo framework. As the reliable patches distributed over …

Information Filtering By Multiple Examples, Mingzhu Zhu

Dissertations

A key to successfully satisfy an information need lies in how users express it using keywords as queries. However, for many users, expressing their information needs using keywords is difficult, especially when the information need is complex. Search By Multiple Examples (SBME), a promising method for overcoming this problem, allows users to specify their information needs as a set of relevant documents rather than as a set of keywords.

Most of the studies on SBME adopt the Positive Unlabeled learning (PU learning) techniques by treating the user's provided examples (denoted as query examples) as positive set and the entire data …

Molecular And Computational Methods For Cellular State Control, Drew Groves Michael

Arts & Sciences Graduate Student Theses and Dissertations

The control of cellular state has many promising applications, including stem cell biology andregenerative medicine, biofuel production, and gene therapy. This dissertation demonstrates acomprehensive approach to cellular state control at the transcriptional level. We introduce anovel algorithm, NetSurgeon, which utilizes genome-wide gene regulatory networks to identifyinterventions that will force a cell toward a desired expression state. Following extensive insilico validation, we applied NetSurgeon to S. cerevisiae biofuel production, generatinginterventions designed to promote a fermentative state during xylose catabolism. Our selectedinterventions successfully promoted a fermentative transcriptional state and generated strainswith higher xylose import rates, improved xylose integration and increased ethanol productionrates. …

Eliciting Knowledge Bases With Defeasible Reasoning: A Comparative Analysis With Machine Learning, Peter Keogh

Dissertations

This thesis compares the ability of an implementation of Defeasible Reasoning (via Argumentation Theory) to model a construct (mental workload) with Machine Learning. In order to perform this comparison a defeasible reasoning system was designed and implemented in software. This software was used to elicit a knowledge base from an expert in an experiment which was then compared with machine learning. The central findings of this thesis were that the knowledge based approach was better at predicting an objective performance measure, time, than machine learning. However, machine learning was better equiped to identify another object measure task membership. The knowledge …

Earthen Levee Slide Detection Via Automated Analysis Of Synthetic Aperture Radar Imagery, Lalitha Dabbiru

Theses and Dissertations

The main focus of this research is to detect vulnerabilities on the Mississippi river levees using remotely sensed Synthetic Aperture Radar (SAR) imagery. Unstable slope conditions can lead to slump slides, which weaken the levees and increase the likelihood of failure during floods. On-site inspection of levees is expensive and time-consuming, so there is a need to develop efficient automated techniques based on remote sensing technologies to identify levees that are more vulnerable to failure under flood loading. Synthetic Aperture Radar technology, due to its high spatial resolution and potential soil penetration capability, is a good choice to identify problem …

Using Machine Learning To Classify Potential Hazard Of Environmental Chemicals In Rodents, Jie Liu

Theses and Dissertations

Over 10,000 chemicals are currently in commercial use, and hundreds of more chemicals are introduced each year. And humans are exposed to over 6,000 environmental chemicals. But only a small fraction of these chemicals have been adequately assessed for potential hazard, leading to the need to prioritize the chemicals for targeted toxicity testing. It is time-consuming and resource intensive to determine a single chemical’s potential for toxicity using animal testing. This approach is impractical for evaluating tens of thousands of chemicals. Hence, there is an urgent need to find alternatives to animal testing and a number of international efforts are …

Automatic Synthesis Of Instruction Set Semantics And Its Applications, Niranjan Hasabnis

Stony Brook Theses and Dissertations Collection, 2006-2020 (closed to submissions)

Binary analysis, translation and instrumentation tools play an important role in software security. To support binaries for different processors, it is necessary to incorporate the semantics of every processor's instruction set into the tool. Unfortunately, the complexity of modern instruction sets makes the common approach of manual semantics modeling cumbersome and error-prone. Furthermore, it limits the number of processors as well as the fraction of the instruction set that is supported. In this dissertation, we propose novel architecture-neutral techniques for automatically synthesizing the semantics of instruction sets. Our approach relies on the observation that modern compilers such as GCC and …

Machine Learning Methods Enable Predictive Modeling Of Antibody Feature:Function Relationships In Rv144 Vaccinees, Ickwon Choi, Amy W. Chung, Todd J. Suscovich, Supachai Rerks-Ngarm, Punnee Pitisuttithum, Sorachai Nitayapha, Jaranit Kaewkungwal, Robert J. O'Connell, Donald Francis, Merlin L. Robb, Nelson L. Michael, Jerome H. Kim, Galit Alter, Margaret E. Ackerman, Chris Bailey-Kellogg

Dartmouth Scholarship

The adaptive immune response to vaccination or infection can lead to the production of specific antibodies to neutralize the pathogen or recruit innate immune effector cells for help. The non-neutralizing role of antibodies in stimulating effector cell responses may have been a key mechanism of the protection observed in the RV144 HIV vaccine trial. In an extensive investigation of a rich set of data collected from RV144 vaccine recipients, we here employ machine learning methods to identify and model associations between antibody features (IgG subclass and antigen specificity) and effector function activities (antibody dependent cellular phagocytosis, cellular cytotoxicity, and cytokine …

Vision Based Multiple Target Tracking Using Recursive Ransac, Kyle Ingersoll

Theses and Dissertations

In this thesis, the Recursive-Random Sample Consensus (R-RANSAC) multiple target tracking (MTT) algorithm is further developed and applied to video taken from static platforms. Development of R-RANSAC is primarily focused in three areas: data association, the ability to track maneuvering objects, and track management. The probabilistic data association (PDA) filter performs very well in the R-RANSAC framework and adds minimal computation cost over less sophisticated methods. The interacting multiple models (IMM) filter as well as higher-order linear models are incorporated into R-RANSAC to improve tracking of highly maneuverable targets. An effective track labeling system, a more intuitive track merging criteria, …

Deformation Twin Nucleation And Growth Characterization In Magnesium Alloys Using Novel Ebsd Pattern Analysis And Machine Learning Tools, Travis Michael Rampton

Theses and Dissertations

Deformation twinning in Magnesium alloys both facilitates slip and forms sites for failure. Currently, basic studies of twinning in Mg are facilitated by electron backscatter diffraction (EBSD) which is able to extract a myriad of information relating to crystalline microstructures. Although much information is available via EBSD, various problems relating to deformation twinning have not been solved. This dissertation provides new insights into deformation twinning in Mg alloys, with particular focus on AZ31. These insights were gained through the development of new EBSD and related machine learning tools that extract more information beyond what is currently accessed.The first tool relating …

Use Of A High-Value Social Audience Index For Target Audience Identification On Twitter, Siaw Ling Lo, David Cornforth, Raymond. Chiong

Research Collection School Of Computing and Information Systems

With the large and growing user base of social media, it is not an easy feat to identify potential customers for business. This is mainly due to the challenge of extracting commercially viable contents from the vast amount of free-form conversations. In this paper, we analyse the Twitter content of an account owner and its list of followers through various text mining methods and segment the list of followers via an index. We have termed this index as the High-Value Social Audience (HVSA) index. This HVSA index enables a company or organisation to devise their marketing and engagement plan according …

Polymer Dielectrics Design Using First Principles Computations And Machine Learning, Chenchen Wang

Doctoral Dissertations

Polymers offer a nearly infinite variety of material systems with diverse properties.

Until recently, the formulation of polymers for specific applications was based

on trial and error, guided by intuition. In this work, first principles computations

and machine learning approach are employed to guide the design of polymers, in

the present case for dielectric applications. Specically, we adopt two strategies, (1)

functionalization of a well understood polymer dielectrics, such as PE and PP, to

enhance its dielectric response, and (2) discovery of entirely new classes of polymer

dielectrics, both organic and organometallic. Different polymer classes are explored,

from C-based organic …

Electroencephalogram Based Causality Graph Analysis In Behavior Tasks Of Parkinson’S Disease Patients, Abdulaziz Saleh Almalaq

Electronic Theses and Dissertations

Electroencephalographic (EEG) signals of the human brains represent electrical activities for a number of channels recorded over a the scalp. The main purpose of this thesis is to investigate the interactions and causality of different parts of a brain using EEG signals recorded during a performance subjects of verbal fluency tasks. Subjects who have Parkinson's Disease (PD) have difficulties with mental tasks, such as switching between one behavior task and another. The behavior tasks include phonemic fluency, semantic fluency, category semantic fluency and reading fluency. This method uses verbal generation skills, activating different Broca's areas of the Brodmann's areas (BA44 …

Energy Cost Forecasting For Event Venues, Katarina Grolinger, Andrea Zagar, Miriam Am Capretz, Luke Seewald

Electrical and Computer Engineering Publications

Electricity price, consumption, and demand forecasting has been a topic of research interest for a long time. The proliferation of smart meters has created new opportunities in energy prediction. This paper investigates energy cost forecasting in the context of entertainment event-organizing venues, which poses significant difficulty due to fluctuations in energy demand and wholesale electricity prices. The objective is to predict the overall cost of energy consumed during an entertainment event. Predictions are carried out separately for each event category and feature selection is used to select the most effective combination of event attributes for each category. Three machine learning …

Cluster-Based Boosting, L. Dee Miller, Leen-Kiat Soh

School of Computing: Faculty Publications

Boosting is an iterative process that improves the predictive accuracy for supervised (machine) learning algorithms. Boosting operates by learning multiple functions with subsequent functions focusing on incorrect instances where the previous functions predicted the wrong label. Despite considerable success, boosting still has difficulty on data sets with certain types of problematic training data (e.g., label noise) and when complex functions overfit the training data. We propose a novel cluster-based boosting (CBB) approach to address limitations in boosting for supervised learning systems. Our CBB approach partitions the training data into clusters containing highly similar member data and integrates these clusters directly …

Analytical Study Of Computer Vision-Based Pavement Crack Quantification Using Machine Learning Techniques, Soroush Mokhtari

Electronic Theses and Dissertations

Image-based techniques are a promising non-destructive approach for road pavement condition evaluation. The main objective of this study is to extract, quantify and evaluate important surface defects, such as cracks, using an automated computer vision-based system to provide a better understanding of the pavement deterioration process. To achieve this objective, an automated crack-recognition software was developed, employing a series of image processing algorithms of crack extraction, crack grouping, and crack detection. Bottom-hat morphological technique was used to remove the random background of pavement images and extract cracks, selectively based on their shapes, sizes, and intensities using a relatively small number …

Characterization Of Prose By Rhetorical Structure For Machine Learning Classification, James Java

CCAC Theses and Dissertations

Measures of classical rhetorical structure in text can improve accuracy in certain types of stylistic classification tasks such as authorship attribution. This research augments the relatively scarce work in the automated identification of rhetorical figures and uses the resulting statistics to characterize an author's rhetorical style. These characterizations of style can then become part of the feature set of various classification models.

Our Rhetorica software identifies 14 classical rhetorical figures in free English text, with generally good precision and recall, and provides summary measures to use in descriptive or classification tasks. Classification models trained on Rhetorica's rhetorical measures paired with …

Singular Value Computation And Subspace Clustering, Qiao Liang

Theses and Dissertations--Mathematics

In this dissertation we discuss two problems. In the first part, we consider the problem of computing a few extreme eigenvalues of a symmetric definite generalized eigenvalue problem or a few extreme singular values of a large and sparse matrix. The standard method of choice of computing a few extreme eigenvalues of a large symmetric matrix is the Lanczos or the implicitly restarted Lanczos method. These methods usually employ a shift-and-invert transformation to accelerate the speed of convergence, which is not practical for truly large problems. With this in mind, Golub and Ye proposes an inverse-free preconditioned Krylov subspace method, …

Towards Improving Human-Robot Interaction For Social Robots, Saad Khan

Electronic Theses and Dissertations

Autonomous robots interacting with humans in a social setting must consider the social-cultural environment when pursuing their objectives. Thus the social robot must perceive and understand the social cultural environment in order to be able to explain and predict the actions of its human interaction partners. This dissertation contributes to the emerging field of human-robot interaction for social robots in the following ways: 1. We used the social calculus technique based on culture sanctioned social metrics (CSSMs) to quantify, analyze and predict the behavior of the robot, human soldiers and the public perception in the Market Patrol peacekeeping scenario. 2. …

Data-Driven Simulation Modeling Of Construction And Infrastructure Operations Using Process Knowledge Discovery, Reza Akhavian

Electronic Theses and Dissertations

Within the architecture, engineering, and construction (AEC) domain, simulation modeling is mainly used to facilitate decision-making by enabling the assessment of different operational plans and resource arrangements, that are otherwise difficult (if not impossible), expensive, or time consuming to be evaluated in real world settings. The accuracy of such models directly affects their reliability to serve as a basis for important decisions such as project completion time estimation and resource allocation. Compared to other industries, this is particularly important in construction and infrastructure projects due to the high resource costs and the societal impacts of these projects. Discrete event simulation …

A Comparative Study Of Two Prediction Models For Brain Tumor Progression, Deqi Zhou, Loc Tran, Jihong Wang, Jiang Li, Karen O. Egiazarian (Ed.), Sos S. Agaian (Ed.), Atanas P. Gotchev (Ed.)

Electrical & Computer Engineering Faculty Publications

MR diffusion tensor imaging (DTI) technique together with traditional T1 or T2 weighted MRI scans supplies rich information sources for brain cancer diagnoses. These images form large-scale, high-dimensional data sets. Due to the fact that significant correlations exist among these images, we assume low-dimensional geometry data structures (manifolds) are embedded in the high-dimensional space. Those manifolds might be hidden from radiologists because it is challenging for human experts to interpret high-dimensional data. Identification of the manifold is a critical step for successfully analyzing multimodal MR images.

We have developed various manifold learning algorithms (Tran et al. 2011; Tran et al. …

Modeling User Transportation Patterns Using Mobile Devices, Erfan Davami

Electronic Theses and Dissertations

Participatory sensing frameworks use humans and their computing devices as a large mobile sensing network. Dramatic accessibility and affordability have turned mobile devices (smartphone and tablet computers) into the most popular computational machines in the world, exceeding laptops. By the end of 2013, more than 1.5 billion people on earth will have a smartphone. Increased coverage and higher speeds of cellular networks have given these devices the power to constantly stream large amounts of data. Most mobile devices are equipped with advanced sensors such as GPS, cameras, and microphones. This expansion of smartphone numbers and power has created a sensing …

Context Aware Textual Entailment, Soha Arab-Khazaeli

LSU Doctoral Dissertations

In conversations, stories, news reporting, and other forms of natural language, understanding requires participants to make assumptions (hypothesis) based on background knowledge, a process called entailment. These assumptions may then be supported, contradicted, or refined as a conversation or story progresses and additional facts become known and context changes. It is often the case that we do not know an aspect of the story with certainty but rather believe it to be the case; i.e., what we know is associated with uncertainty or ambiguity. In this research a method has been developed to identify different contexts of the input raw …

Seavipers - Computer Vision And Inertial Position Reference Sensor System (Cviprss), Justin Lee Erdman

LSU Doctoral Dissertations

This work describes the design and development of an optical, Computer Vision (CV) based sensor for use as a Position Reference System (PRS) in Dynamic Positioning (DP). Using a combination of robotics and CV techniques, the sensor provides range and heading information to a selected reference object. The proposed optical system is superior to existing ones because it does not depend upon special reflectors nor does it require a lengthy set-up time. This system, the Computer Vision and Inertial Position Reference Sensor System (CVIPRSS, pronounced \nickname), combines a laser rangefinder, infrared camera, and a pan--tilt unit with the robust TLD …

High-Performance Extreme Learning Machines: A Complete Toolbox For Big Data Applications, Anton Akusok, Kaj Mikael Bjork, Yoan Miche, Amaury Lendasse

Engineering Management and Systems Engineering Faculty Research & Creative Works

This Paper Presents a Complete Approach to a Successful Utilization of a High-Performance Extreme Learning Machines (Elms) Toolbox for Big Data. It Summarizes Recent Advantages in Algorithmic Performance; Gives a Fresh View on the Elm Solution in Relation to the Traditional Linear Algebraic Performance; and Reaps the Latest Software and Hardware Performance Achievements. the Results Are Applicable to a Wide Range of Machine Learning Problems and Thus Provide a Solid Ground for Tackling Numerous Big Data Challenges. the Included Toolbox is Targeted at Enabling the Full Potential of Elms to the Widest Range of Users.