Digital Commons Network^™

A Data-Driven Approach For Modeling Agents, Hamdi Kavak

Computational Modeling & Simulation Engineering Theses & Dissertations

Agents are commonly created on a set of simple rules driven by theories, hypotheses, and assumptions. Such modeling premise has limited use of real-world data and is challenged when modeling real-world systems due to the lack of empirical grounding. Simultaneously, the last decade has witnessed the production and availability of large-scale data from various sensors that carry behavioral signals. These data sources have the potential to change the way we create agent-based models; from simple rules to driven by data. Despite this opportunity, the literature has neglected to offer a modeling approach to generate granular agent behaviors from data, creating …

Highly Accurate Fragment Library For Protein Fold Recognition, Wessam Elhefnawy

Computer Science Theses & Dissertations

Proteins play a crucial role in living organisms as they perform many vital tasks in every living cell. Knowledge of protein folding has a deep impact on understanding the heterogeneity and molecular functions of proteins. Such information leads to crucial advances in drug design and disease understanding. Fold recognition is a key step in the protein structure discovery process, especially when traditional computational methods fail to yield convincing structural homologies. In this work, we present a new protein fold recognition approach using machine learning and data mining methodologies.

First, we identify a protein structural fragment library (Frag-K) composed of a …

The Validity Of Microblogs As A Source For Idiopathic Pulmonary Fibrosis Patient-Reported Outcomes, Kim Tran

Theses and Dissertations

Idiopathic pulmonary fibrosis (IPF) is an interstitial lung disease which affects an estimated five million patients worldwide. Characterized by progressive respiratory failure and a median patient survival time of three to five years, this disease affects 150,000 patients in the United States (US) and results in 40,000 deaths annually. While the US mortality rate for IPF is similar to breast cancer, idiopathic pulmonary fibrosis remains characterized as a rare disease. Lack of awareness and information for lesser known diseases such as IPF can affect factors ranging from proper diagnosis to the advancement of the drug development pipeline. One platform which …

Evaluating Machine Learning Techniques For Smart Home Device Classification, Angelito E. Aragon Jr.

Theses and Dissertations

Smart devices in the Internet of Things (IoT) have transformed the management of personal and industrial spaces. Leveraging inexpensive computing, smart devices enable remote sensing and automated control over a diverse range of processes. Even as IoT devices provide numerous benefits, it is vital that their emerging security implications are studied. IoT device design typically focuses on cost efficiency and time to market, leading to limited built-in encryption, questionable supply chains, and poor data security. In a 2017 report, the United States Government Accountability Office recommended that the Department of Defense investigate the risks IoT devices pose to operations security, …

Machine Learning Models Of C-17 Specific Range Using Flight Recorder Data, Marcus Catchpole

Theses and Dissertations

Fuel is a significant expense for the Air Force. The C-17 Globemaster eet accounts for a significant portion. Estimating the range of an aircraft based on its fuel consumption is nearly as old as flight itself. Consideration of operational energy and the related consideration of fuel efficiency is increasing. Meanwhile machine learning and data-mining techniques are on the rise. The old question, "How far can my aircraft y with a given load cargo and fuel?" has given way to "How little fuel can I load into an aircraft and safely arrive at the destination?" Specific range is a measure of …

Confidence Inference In Defensive Cyber Operator Decision Making, Graig S. Ganitano

Theses and Dissertations

Cyber defense analysts face the challenge of validating machine generated alerts regarding network-based security threats. Operations tempo and systematic manpower issues have increased the importance of these individual analyst decisions, since they typically are not reviewed or changed. Analysts may not always be confident in their decisions. If confidence can be accurately assessed, then analyst decisions made under low confidence can be independently reviewed and analysts can be offered decision assistance or additional training. This work investigates the utility of using neurophysiological and behavioral correlates of decision confidence to train machine learning models to infer confidence in analyst decisions. Electroencephalography …

Characterization Of Tropical Cyclone Intensity Using Microwave Imagery, Amanda M. Nelson

Theses and Dissertations

In the absence of wind speed data from aircraft reconnaissance of tropical cyclones (TCs), analysts rely on remote sensing tools to estimate TC intensity. For over 40 years, the Dvorak technique has been applied to estimate intensity using visible and infrared (IR) satellite imagery, but its accuracy is sometimes limited when the radiative effects of high clouds obscure the TC convective structure below. Microwave imagery highlights areas of precipitation and deep convection revealing different patterns than visible and IR imagery. This study explores application of machine learning algorithms to identify patterns in microwave imagery to infer storm intensity, particularly focusing …

A Performance Comparison Of Machine Learning Algorithms For Arced Labyrinth Spillways, Fernando Salazar, Brian M. Crookston

Publications

Labyrinth weirs provide an economic option for flow control structures in a variety of applications, including as spillways at dams. The cycles of labyrinth weirs are typically placed in a linear configuration. However, numerous projects place labyrinth cycles along an arc to take advantage of reservoir conditions and dam alignment, and to reduce construction costs such as narrowing the spillway chute. Practitioners must optimize more than 10 geometric variables when developing a head–discharge relationship. This is typically done using the following tools: empirical relationships, numerical modeling, and physical modeling. This study applied a new tool, machine learning, to the analysis …

Computational Regiospecific Analysis Of Brain Lipidomic Profiles, Austin Ahlstrom

Undergraduate Honors Theses

Mass spectrometry provides an extensive data set that can prove unwieldy for practical analytical purposes. Applying programming and machine learning methods to automate region analysis in DESI mass spectrometry of mouse brain tissue can help direct and refine such an otherwise unusable data set. The results carry promise of faster, more reliable analysis of this type, and yield interesting insights into molecular characteristics of regions of interest within these brain samples. These results have significant implications in continued investigation of molecular processes in the brain, along with other aspects of mass spectrometry, collective analysis of biological molecules (i.e. omics), and …

Recipe For Disaster, Zac Travis

MFA Thesis Exhibit Catalogs

Today’s rapid advances in algorithmic processes are creating and generating predictions through common applications, including speech recognition, natural language (text) generation, search engine prediction, social media personalization, and product recommendations. These algorithmic processes rapidly sort through streams of computational calculations and personal digital footprints to predict, make decisions, translate, and attempt to mimic human cognitive function as closely as possible. This is known as machine learning.

The project Recipe for Disaster was developed by exploring automation in technology, specifically through the use of machine learning and recurrent neural networks. These algorithmic models feed on large amounts of data as a …

Essays On Cloud Computing Analytics, Vivek Kumar Singh

USF Tampa Graduate Theses and Dissertations

This dissertation research focuses on two key aspects of cloud computing research – pricing and security using data-driven techniques such as deep learning and econometrics. The first dissertation essay (Chapter 1) examines the adoption of spot market in cloud computing and builds IT investment estimation models for organizations adopting cloud spot market. The second dissertation essay (Chapter 2 and 3) studies proactive threat detection and prediction in cloud computing. The final dissertation essay (Chapter 4) develops a secured cloud files system which protects organizations using cloud computing in accidental data leaks.

Natural Language Processing And Machine Learning To Identify Alcohol Misuse From The Electronic Health Record In Trauma Patients: Development And Internal Validation, Majid Afshar, Andrew Phillips, Niranjan Karnik, Jeanne Mueller, Daniel To, Richard Gonzalez, Ron Price, Richard Cooper, Cara Joyce, Dmitriy Dligach

Faculty Publications

Objective: Alcohol misuse is present in over a quarter of trauma patients. Information in the clinical notes of the electronic health record of trauma patients may be used for phenotyping tasks with natural language processing (NLP) and supervised machine learning. The objective of this study is to train and validate an NLP classifier for identifying patients with alcohol misuse. Materials and Methods: An observational cohort of 1422 adult patients admitted to a trauma center between April 2013 and November 2016. Linguistic processing of clinical notes was performed using the clinical Text Analysis and Knowledge Extraction System. The primary analysis was …

Confusion Prediction From Eye-Tracking Data: Experiments With Machine Learning, Joni Salminen, Mridul Nagpal, Haewoon Kwak, Jisun An, Soon-Gyo Jung, Bernard J. Jansen

Research Collection School Of Computing and Information Systems

Predicting user confusion can help improve information presentation on websites, mobile apps, and virtual reality interfaces. One promising information source for such prediction is eye-tracking data about gaze movements on the screen. Coupled with think-aloud records, we explore if user's confusion is correlated with primarily fixation-level features. We find that random forest achieves an accuracy of more than 70% when prediction user confusion using only fixation features. In addition, adding user-level features (age and gender) improves the accuracy to more than 90%. We also find that balancing the classes before training improves performance. We test two balancing algorithms, Synthetic Minority …

Noise-Tolerant Modular Neural Network System For Classifying Ecg Signal, Alberto Ochoa, Luis J. Mena, Vanessa G. Felix, Apolinar Gonzalez, Walter Mena, Gladys E. Maestre

School of Medicine Publications

Millions of electrocardiograms (ECG) are interpreted every year, requiring specialized training for accurate interpretation. Because automated and accurate classification ECG signals will improve early diagnosis of heart condition, several neural network (NN) approaches have been proposed for classifying ECG signals. Current strategies for a critical step, the preprocessing for noise removal, are still unsatisfactory. We propose a modular NN approach based on artificial noise injection, to improve the generalization capability of the resulting model. The NN classifier initially performed a fairly accurate recognition of four types of cardiac anomalies in simulated ECG signals with minor, moderate, severe, and extreme noise, …

Kaggle And Click-Through Rate Prediction, Todd W. Neller

Computer Science Faculty Publications

Neller presented a look at Kaggle.com, an online Data Science and Machine Learning learning community, as a place to seek rapid, experiential peer education for most any Data Science topic. Using the specific challenge of Click-Through Rate Prediction (CTRP), he focused on lessons learned from relevant Kaggle competitions on how to perform CTRP.

American Sign Language Recognition Using Machine Learning And Computer Vision, Kshitij Bantupalli, Ying Xie

Master of Science in Computer Science Theses

Speech impairment is a disability which affects an individual’s ability to communicate using speech and hearing. People who are affected by this use other media of communication such as sign language. Although sign language is ubiquitous in recent times, there remains a challenge for non-sign language speakers to communicate with sign language speakers or signers. With recent advances in deep learning and computer vision there has been promising progress in the fields of motion and gesture recognition using deep learning and computer vision-based techniques. The focus of this work is to create a vision-based application which offers sign language translation …

Professions And Expertise: How Machine Learning And Blockchain Are Redesigning The Landscape Of Professional Knowledge And Organization, John Flood, Lachlan Robb

University of Miami Law Review

Machine learning has entered the world of the professions with differential impacts. Automation will have huge impacts on the nature of work and society. Engineering, architecture, and medicine are early and enthusiastic adopters of automation. Other professions, especially law, are late and, in some cases, reluctant adopters. This Article examines the effects of artificial intelligence (“AI”) and Blockchain on professions and their knowledge bases. We start by examining the nature of expertise in general and the function of expertise in law. Using examples from law, such as Gulati and Scott’s analysis of how lawyers create (or don’t create) legal agreements, …

Clinical Research In Pneumonia: Role Of Artificial Intelligence, Timothy L. Wiemken, Robert R. Kelley, William A. Mattingly, Julio A. Ramirez

The University of Louisville Journal of Respiratory Infections

No abstract provided.

Functional Gastrointestinal Disorders And Gut-Brain Axis: What Does The Future Hold?, Kashif Mukhtar, Hasham Nawaz, Shahab Abid

Section of Gastroenterology

Despite their high prevalence, lack of understanding of the exact pathophysiology of the functional gastrointestinal disorders has restricted us to symptomatic diagnostic tools and therapies. Complex mechanisms underlying the disturbances in the bidirectional communication between the gastrointestinal tract and the brain have a vital role in the pathogenesis and are key to our understanding of the disease phenomenon. Although we have come a long way in our understanding of these complex disorders with the help of studies on animals especially rodents, there need to be more studies in humans, especially to identify the therapeutic targets. This review study looks at …

Stock Market Prediction Analysis By Incorporating Social And News Opinion And Sentiment, Zhaoxia Wang, Seng-Beng Ho, Zhiping Lin

Research Collection School Of Computing and Information Systems

The price of the stocks is an important indicator for a company and many factors can affect their values. Different events may affect public sentiments and emotions differently, which may have an effect on the trend of stock market prices. Because of dependency on various factors, the stock prices are not static, but are instead dynamic, highly noisy and nonlinear time series data. Due to its great learning capability for solving the nonlinear time series prediction problems, machine learning has been applied to this research area. Learning-based methods for stock price prediction are very popular and a lot of enhanced …

A Learning-Based Automatic Segmentation And Quantification Method On Left Ventricle In Gated Myocardial Perfusion Spect Imaging: A Feasibility Study, Tonghe Wang, Yang Lei, Haipeng Tang, Zhou He, Richard Castillo, Cheng Wang, Dianfu Li, Kristin Higgins, Tian Liu, Walter J. Curran, Walter J. Curran, Weihua Zhou, Xiaofeng Yang

Faculty Publications

Background: The performance of left ventricular (LV) functional assessment using gated myocardial perfusion SPECT (MPS) relies on the accuracy of segmentation. Current methods require manual adjustments that are tedious and subjective. We propose a novel machine-learning-based method to automatically segment LV myocardium and measure its volume in gated MPS imaging without human intervention.

Methods: We used an end-to-end fully convolutional neural network to segment LV myocardium by delineating its endocardial and epicardial surface. A novel compound loss function, which encourages similarity and penalizes discrepancy between prediction and training dataset, is utilized in training stage to achieve excellent performance. …

Spectral Clustering For Electrical Phase Identification Using Advanced Metering Infrastructure Voltage Time Series, Logan Blakely

Dissertations and Theses

The increasing demand for and prevalence of distributed energy resources (DER) such as solar power, electric vehicles, and energy storage, present a unique set of challenges for integration into a legacy power grid, and accurate models of the low-voltage distribution systems are critical for accurate simulations of DER. Accurate labeling of the phase connections for each customer in a utility model is one area of grid topology that is known to have errors and has implications for the safety, efficiency, and hosting capacity of a distribution system. This research presents a methodology for the phase identification of customers solely using …

Knowing Without Knowing: Real-Time Usage Identification Of Computer Systems, Leila Mohammed Hawana

Dissertations and Theses

Contemporary computers attempt to understand a user's actions and preferences in order to make decisions that better serve the user. In pursuit of this goal, computers can make observations that range from simple pattern recognition to listening in on conversations without the device being intentionally active. While these developments are incredibly useful for customization, the inherent security risks involving personal data are not always worth it. This thesis attempts to tackle one issue in this domain, computer usage identification, and presents a solution that identifies high-level usage of a system at any given moment without looking into any personal data. …

Improvements To Consumption Prediction: Machine Learning Methods And Novel Features, Ian Kinskey, Glenn Oswald, Charles Mccann, Travis Finch, Anthony Tanaydin

SMU Data Science Review

Current models for predicting personal consumption expenditures (PCE) employ statistical techniques and rely upon traditional economic features. We compare vector autoregression and random forest regression models using traditional economic features as inputs to predict PCE. Additionally, we develop novel features derived from the earnings call transcripts of publicly traded U.S. companies using natural language processing (NLP) techniques. These new features reduce the mean square error (MSE) of the vector autoregression model by 7% and the random forest model by 23%. We find the random forest models outperformed the vector autoregression models, with a MSE reduction of 68%. We conclude the …

Dc-Rts Noise: Observation And Analysis, Benjamin William Hendrickson

Dissertations and Theses

Dark current random telegraph signal (DC-RTS) is a physical phenomenon that effects the performance of solid state image sensors. Identified by meta-stable stochastic switching between two or more dark current levels, DC-RTS is an emerging concern for device scientists and manufacturers as a limiting noise source. Observed and studied in both charge coupled devices (CCDs) and complementary metal-oxide-semiconductor (CMOS) image sensors, the metastable defects inside the device structure that give rise to this switching phenomenon are known to be derived from radiation damage. An examination of the relationship between high energy photon damage and these RTS defects is presented and …

Assessment Of Post-Wildfire Debris Flow Occurrence Using Classifier Tree, Priscilla Addison, Thomas Oommen, Qiuying Sha

Michigan Tech Publications, Part 1

Besides the dangers of an actively burning wildfire, a plethora of other hazardous consequences can occur afterwards. Debris flows are among the most hazardous of these, being known to cause fatalities and extensive damage to infrastructure. Although debris flows are not exclusive to fire affected areas, a wildfire can increase a location’s susceptibility by stripping its protective covers like vegetation and introducing destabilizing factors such as ash filling soil pores to increase runoff potential. Due to the associated dangers, researchers are developing statistical models to isolate susceptible locations. Existing models predominantly employ the logistic regression algorithm; however, previous studies have …

Intelligent Diagnosis Of Aircraft Electrical Faults Based On Rmbp Neural Network, Lishan Jia, Zhe Liu, Sun Yi

Journal of System Simulation

Abstract: To the characteristics of multiple properties, hard to remove and high cost of time and manpower of aircraft electrical faults maintenance in aircraft maintenance of civil aviation, construction of intelligent aircraft electrical faults diagnosis system using RMBP neural network is proposed. RMBP algorithm is used to study sample data in the intelligent faults diagnosis system as it can overcome the faults of long time of convergence and easy to go into local minima of common BP algorithm, and is suitable for training large-scale neural network,. Experience data are collected, samples are made, samples training and experiment are carried out. …

Etoxpred: A Machine Learning-Based Approach To Estimate The Toxicity Of Drug Candidates 11 Medical And Health Sciences 1115 Pharmacology And Pharmaceutical Sciences 03 Chemical Sciences 0305 Organic Chemistry 03 Chemical Sciences 0304 Medicinal And Biomolecular Chemistry, Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao Chun Wu, Supratik Mukhopadhyay, Michal Brylinski

Faculty Publications

© 2019 The Author(s). Background: The efficiency of drug development defined as a number of successfully launched new pharmaceuticals normalized by financial investments has significantly declined. Nonetheless, recent advances in high-throughput experimental techniques and computational modeling promise reductions in the costs and development times required to bring new drugs to market. The prediction of toxicity of drug candidates is one of the important components of modern drug discovery. Results: In this work, we describe eToxPred, a new approach to reliably estimate the toxicity and synthetic accessibility of small organic compounds. eToxPred employs machine learning algorithms trained on molecular fingerprints to …

Research Of Nonlinear Time Series Prediction Method For Motion Capture, Tianyu Huang, Yunying Guo

Journal of System Simulation

Abstract: In this paper, we study the nonlinear time series prediction method for action capture. A prediction method based on the capture data is studied and implemented by analyzing human motion data to solve the data loss and correction problem caused by sensor failure. Based on this research purpose, the simulation experiment assumes that a sensor in the sequence of actions fails, then uses eight kinds of machine learning methods, and evaluates them with six indexes. The prediction results of different methods are compared and the predicted motions are visualized. Through the experiments, data prediction accuracy by random forest, decision …

Optimizing Control Of Total Heat Supply Based On Machine Learning, Li Qi, Xingqi Hu, Jianmin Zhao

Journal of System Simulation

Abstract: The central heating system has complex structure, along with the characteristics of hysteresis, strong coupling and nonlinear. Contraposing the problem that the process is difficult to be identified and controlled by the mechanism modeling, an optimal control method of heat source total heat production based on machine learning is proposed. The heat source model of central heating system is established by BP neural network and long short-term memory neural network. Under the premise of meeting the demand of heating quality, with the total energy consumption as the optimization objective, the optimal control sequence of water supply temperature and water …