Digital Commons Network^™

Classify Multicategory Outcome In Patients With Lung Adenocarcinoma Using Clinical, Transcriptomic And Clinico-Transcriptomic Data: Machine Learning Versus Multinomial Models, Fei Deng, Lanlan Shen, He Wang, Lanjing Zhang

Children’s Nutrition Research Center Staff Publications

Classification of multicategory survival-outcome is important for precision oncology. Machine learning (ML) algorithms have been used to accurately classify multi-category survival-outcome of some cancer-types, but not yet that of lung adenocarcinoma. Therefore, we compared the performances of 3 ML models (random forests, support vector machine [SVM], multilayer perceptron) and multinomial logistic regression (Mlogit) models for classifying 4-category survival-outcome of lung adenocarcinoma using the TCGA. Mlogit model overall performed similar to SVM and multilayer perceptron models (micro-average area under curve=0.82), while random forests model was inferior. Surprisingly, transcriptomic data alone and clinico-transcriptomic data appeared sufficient to accurately classify the 4-category survival-outcome …

Optimal Feature Selection For Learning-Based Algorithms For Sentiment Classification, Zhaoxia Wang, Zhiping Lin

Research Collection School Of Computing and Information Systems

Sentiment classification is an important branch of cognitive computation—thus the further studies of properties of sentiment analysis is important. Sentiment classification on text data has been an active topic for the last two decades and learning-based methods are very popular and widely used in various applications. For learning-based methods, a lot of enhanced technical strategies have been used to improve the performance of the methods. Feature selection is one of these strategies and it has been studied by many researchers. However, an existing unsolved difficult problem is the choice of a suitable number of features for obtaining the best sentiment …

Efficient Predictive Lossless Hyperspectral Image Compression Using Machine Learning, Zhuocheng Jiang

Dissertations

Hyperspectral imaging technology has found many useful applications in various domains such as remote sensing. Data compression allows for efficient storage and transmission of massive hyperspectral image datasets. In this dissertation, we study efficient predictive coding schemes for lossless compression of hyperspectral images. We use machine learning techniques to improve the following two key components of the predictive coding process: (i) accurate pixel value prediction, and (ii) more efficient entropy coding of the prediction errors (residues). To this end, we propose an adaptive filtering framework based on concatenated neural networks, which are capable of extracting both spatial and spectral correlations …

Artificial Intelligence (Ai) In Urology-Current Use And Future Directions: An Itrue Study, Milap Shah, Nithesh Naik, Bhaskar K. Somani, B. M.Zeeshan Hameed

Open Access archive

Objective: Artificial intelligence (AI) is used in various urological conditions such as urolithiasis, pediatric urology, urogynecology, benign prostate hyperplasia (BPH), renal transplant, and uro-oncology. The various models of AI and its application in urology subspecialties are reviewed and discussed. Material and methods: Search strategy was adapted to identify and review the literature pertaining to the application of AI in urology using the keywords “urology,” “artificial intelligence,” “machine learning,” “deep learning,” “artificial neural networks,” “computer vision,” and “natural language processing” were included and categorized. Review articles, editorial comments, and non-urologic studies were excluded. Results: The article reviewed 47 articles that reported …

Prediction Of Novel Antibiofilm Peptides From Diverse Habitats Using Machine Learning, Bipasa Bose

Master's Theses

Multidrug resistant bacteria often lead to biofilm formation. Biofilm is a colonizedform of pathogens (fungi, bacteria) attached to surfaces like animal or plant tissues, medical devices like catheters, and artificial heart valves. Biofilm formation prolongs the survival of microorganisms in an adaptive environment, leading to the spread of infection in different organs and causing a high morbidity rate. Given the rise of chronic infection and antibiotic resistance due to biofilm, it is essential to find an alternative solution to control biofilm infections. Antibiofilm peptides can interact with these biofilm-creating pathogens to inhibit growth, virulence, and biofilm formation. We hypothesized that …

Searching For Needles In The Cosmic Haystack, Thomas Ryan Devine

Graduate Theses, Dissertations, and Problem Reports (ETD)

Searching for pulsar signals in radio astronomy data sets is a difficult task. The data sets are extremely large, approaching the petabyte scale, and are growing larger as instruments become more advanced. Big Data brings with it big challenges. Processing the data to identify candidate pulsar signals is computationally expensive and must utilize parallelism to be scalable. Labeling benchmarks for supervised classification is costly. To compound the problem, pulsar signals are very rare, e.g., only 0.05% of the instances in one data set represent pulsars. Furthermore, there are many different approaches to candidate classification with no consensus on a best …

Evaluating An Ordinal Output Using Data Modeling, Algorithmic Modeling, And Numerical Analysis, Martin Keagan Wynne Brown

Murray State Theses and Dissertations

Data and algorithmic modeling are two different approaches used in predictive analytics. The models discussed from these two approaches include the proportional odds logit model (POLR), the vector generalized linear model (VGLM), the classification and regression tree model (CART), and the random forests model (RF). Patterns in the data were analyzed using trigonometric polynomial approximations and Fast Fourier Transforms. Predictive modeling is used frequently in statistics and data science to find the relationship between the explanatory (input) variables and a response (output) variable. Both approaches prove advantageous in different cases depending on the data set. In our case, the data …

Bioinformatic Extraction Of Functional Genetic Diversity From Heterogeneous Germplasm Collections For Crop Improvement, Patrick A. Reeves, Hannah M. Tetreault, Christopher M. Richards

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Efficient utilization of genetic variation in plant germplasm collections is impeded by large collection size, uneven characterization of traits, and unpredictable apportionment of allelic diversity among heterogeneous accessions. Distributing compact subsets of the complete collection that contain maximum allelic diversity at functional loci of interest could streamline conventional and precision breeding. Using heterogeneous population samples from Arabidopsis, Populus and sorghum, we show that genomewide single nucleotide polymorphism (SNP) data permits the capture of 3–78 fold more haplotypic diversity in subsets than geographic or environmental data, which are commonly used surrogate predictors of genetic diversity. Using a large genomewide SNP data …

Online Clustering With Bayesian Nonparametrics, Matthew D. Scherreik

Browse all Theses and Dissertations

Clustering algorithms, such as Gaussian mixture models and K-means, often require the number of clusters to be specified a priori. Bayesian nonparametric (BNP) methods avoid this problem by specifying a prior distribution over the cluster assignments that allows the number of clusters to be inferred from the data. This can be especially useful for online clustering tasks, where data arrives in a continuous stream and the number of clusters may dynamically change over time. Classical BNP priors often overestimate the number of clusters, however, leading researchers to develop new priors with more control over this tendency. To date, BNP algorithms …

Extracting Useful Information And Building Predictive Models From Medical And Health-Care Data Using Machine Learning Techniques, Md Faisal Kabir

Computer Science

In healthcare, a large number of medical data has emerged. To effectively use these data to improve healthcare outcomes, clinicians need to identify the relevant measures and apply the correct analysis methods for the type of data at hand. In this dissertation, we present various machine learning (ML) and data mining (DM) methods that could be applied to the type of data sets that are available in the healthcare area. The first part of the dissertation investigates DM methods on healthcare or medical data to find significant information in the form of rules. Class association rule mining, a variant of …

Soybean Leaf Chlorophyll Estimation And Iron Deficiency Field Rating Determination At Plot And Field Scales Through Image Processing And Machine Learning, Oveis Hassanijalilian

Agribusiness and Biosystems Engineering

Iron deficiency chlorosis (IDC) is the most common reason for chlorosis in soybean (Glycine max (L.) Merrill) and causes an average yield loss of 120 million dollars per year across 1.8 million ha in the North Central US alone. As the most effective way to avoid IDC is the use of tolerant cultivars, they are visually rated for IDC by experts; however, this method is subjective and not feasible for a larger scale. An alternate more objective image processing method can be implemented in various platforms and fields. This approach relies on a color vegetation index (CVI) that can quantify …

Ai Report: Humanity Is Doomed. Send Lawyers, Guns, And Money!, Ashley M. London

Law Faculty Publications

AI systems are powerful technologies being built and implemented by private corporations motivated by profit, not altruism. Change makers, such as attorneys and law students, must therefore be educated on the benefits, detriments, and pitfalls of the rapid spread, and often secret implementation of this technology. The implementation is secret because private corporations place proprietary AI systems inside of black boxes to conceal what is inside. If they did not, the popular myth that AI systems are unbiased machines crunching inherently objective data would be revealed as a falsehood. Algorithms created to run AI systems reflect the inherent human categorization …

A Machine Learning And Data-Driven Prediction And Inversion Of Reservoir Brittleness From Geophysical Logs And Seismic Signals: A Case Study In Southwest Pennsylvania, Central Appalachian Basin, Tobi Micheal Ore

Graduate Theses, Dissertations, and Problem Reports (ETD)

In unconventional reservoir sweet-spot identification, brittleness is an important parameter that is used as an easiness measure of production from low permeability reservoirs. In shaly reservoirs, production is realized from hydraulic fracturing, which depends on how brittle the rock is–as it opens natural fractures and also creates new fractures. A measure of brittleness, brittleness index, is obtained through elastic properties of the rock. In practice, problems arise using this method to predict brittleness because of the limited availability of elastic logs.

To address this issue, machine learning techniques are adopted to predict brittleness at well locations from readily available geophysical …

Using Ai And Machine Learning To Indicate Shale Anisotropy And Assist In Completions Design, Cole E. Palmer

Graduate Theses, Dissertations, and Problem Reports (ETD)

Operating companies in the unconventional Marcellus shale play have all faced a similar and problematic issue, while attempting to produce natural gas over the last decade. Companies have quickly realized that not every perforation along their horizontal wells are producing gas. In fact, producing perforations are only ranging from 15%-70% of the total perforations along the horizontal wellbore [1]. This unexplained issue results in millions of dollars in lost revenue per well, in addition to the sunk cost of paying for completions that are not actually yielding any produced gas.

What is causing these perforations to have no produced gas? …

High Tech, High Risk: Tech Ethics Lessons For The Covid-19 Pandemic Response, Emanuel Moss, Jacob Metcalf

Publications and Research

The COVID-19 pandemic has, in a matter of a few short months, drastically reshaped society around the world. Because of the growing perception of machine learning as a technology capable of addressing large problems at scale, machine learning applications have been seen as desirable interventions in mitigating the risks of the pandemic disease. However, machine learning, like many tools of technocratic governance, is deeply implicated in the social production and distribution of risk and the role of machine learning in the production of risk must be considered as engineers and other technologists develop tools for the current crisis. This paper …

Machine Learning Stock Market Prediction Studies: Review And Research Directions, Troy J. Strader, John J. Rozycki, Thomas H. Root, Yu-Hsiang John Huang

Journal of International Technology and Information Management

Stock market investment strategies are complex and rely on an evaluation of vast amounts of data. In recent years, machine learning techniques have increasingly been examined to assess whether they can improve market forecasting when compared with traditional approaches. The objective for this study is to identify directions for future machine learning stock market prediction research based upon a review of current literature. A systematic literature review methodology is used to identify relevant peer-reviewed journal articles from the past twenty years and categorize studies that have similar methods and contexts. Four categories emerge: artificial neural network studies, support vector machine …

Molecular Social Reality, The Cultural Helix & Sequencing Social Dna, Aidan Christopher Haughey

University Honors Theses

This thesis provides a theory for measuring Social Reality, along with a framework and model which apply that theory to measure presented social reality in media. The framework and model utilize the double helical structure of DNA to create a baseline unit of social reality that can be extracted from media to help measure and categorize social realities. An experiment is provided utilizing a custom built machine learning algorithm to demonstrate the practical application of the theory, framework, and model.

Sparsity And Weak Supervision In Quantum Machine Learning, Seyran Saeedi

Theses and Dissertations

Quantum computing is an interdisciplinary field at the intersection of computer science, mathematics, and physics that studies information processing tasks on a quantum computer. A quantum computer is a device whose operations are governed by the laws of quantum mechanics. As building quantum computers is nearing the era of commercialization and quantum supremacy, it is essential to think of potential applications that we might benefit from. Among many applications of quantum computation, one of the emerging fields is quantum machine learning. We focus on predictive models for binary classification and variants of Support Vector Machines that we expect to be …

Sketic: A Machine Learning-Based Digital Circuit Recognition Platform, Mohamamd Abdel Majeed, Tasneem Almousa, Maysaa Alsalman, Abeer Yosef

Turkish Journal of Electrical Engineering and Computer Sciences

In digital system design, digital logic circuit diagrams are built using interconnects and symbolic representations of the basic logic gates. Constructing such diagrams using free sketches is the first step in the design process. After that the circuit schematic or code has to be generated before being able to simulate the design. While most of the mentioned steps are automated using design automation tools, drafting the schematic circuit and then converting it into a valid format that can be simulated are still done manually due to the lack of robust tools that can recognize the free sketches and incorporate them …

Exploring The Parameter Space Of Human Activity Recognition With Mobile Devices, Berrenur Saylam, Muhammad Shoaib, Özlem Durmaz İncel

Turkish Journal of Electrical Engineering and Computer Sciences

Motion sensors available on smart phones make it possible to recognize human activities. Accelerometer, gyroscope, magnetometer, and their various combinations are used to classify, particularly, locomotion activities, ranging from walking to biking. In most of the studies, the focus is on the collection of data and on the analysis of the impact of different parameters on the recognition performance. The parameter space includes the types of sensors used, features, classification algorithms, and position/orientation of the mobile device. In most of the studies, the impact of some of these parameters is partially analyzed; however, in this work, we investigate the parameter …

Satellite Constellation Deployment And Management, Joseph Ryan Kopacz

Electronic Theses and Dissertations

This paper will review results and discuss a new method to address the deployment and management of a satellite constellation. The first two chapters will explorer the use of small satellites, and some of the advances in technology that have enabled small spacecraft to maintain modern performance requirements in incredibly small packages.

The third chapter will address the multiple-objective optimization problem for a global persistent coverage constellation of communications spacecraft in Low Earth Orbit. A genetic algorithm was implemented in MATLAB to explore the design space – 288 trillion possibilities – utilizing the Satellite Tool Kit (STK) software developers kit. …

Development Of Machine Learning Models To Predict The Online Impact Of Research, Mohammed Murtuza Shahzad Syed

Graduate Research Theses & Dissertations

Scientific research is being increasingly shared online in a way such that there is a need to develop methodologies to measure the impact of specific papers in ways that go beyond traditional indicators of scholarly citations and beyond the scholarly community. In this thesis, new machine learning models are developed to measure and predict the impact ofresearch in the online context. The extent to which research papers are mentioned on social media platforms, i.e., their online sustainability, indicates the public's interest in and perhaps even the level of understanding of scientific topics. A research paper having a long lifespan, i.e., …

Ethical Thinking Machines In Surgery And The Requirement For Clinical Leadership, Quinlan D. Buchlak, Nazanin Esmaili, Jean-Christophe Leveque, Christine Bennett, Massimo Piccardi, Farrokh Farrokhi

Medical Papers and Journal Articles

No abstract available.

Predicting Drug Misuse Status Using Machine Learning On Electronic Health Records, Robert Arnold Kania

Master's Theses

Substance misuse is a major problem in the world. in 2014, as many as 52,404 deaths in the US were caused by drug overdoses. in 2001, the monetary cost of drug misuse has been estimated to be 414 billion dollars. in this work, we explore the use of different machine learning algorithms in the prediction of cocaine misuse using structured and unstructured data found in electronic health records. These records contain various attributes that can help with this prediction, including but not limited to chart text data, previous diagnoses of certain diseases and information about the area the patient lives …

Computer Vision Gesture Recognition For Rock Paper Scissors, Nicholas Hunter

Senior Independent Study Theses

This project implements a human versus computer game of rock-paper-scissors using machine learning and computer vision. Player’s hand gestures are detected using single images with the YOLOv3 object detection system. This provides a generalized detection method which can recognize player moves without the need for a special background or lighting setup. Additionally, past moves are examined in context to predict the most probable next move of the system’s opponent. In this way, the system achieves higher win rates against human opponents than by using a purely random strategy.

Ai And Machine Learning Usage In Actuarial Science, Joanna Riley

Williams Honors College, Honors Research Projects

Some people in the world work hard and do whatever it takes in order to get a job that they love. There are others that don’t care about their jobs and solely perform them in order to make money. So, there are individuals or groups that wouldn’t care if a machine or computer were to replace them in their job, but others would be devastated. The question for this paper is: Can actuaries be completely replaced by computers, or do we need the human mind in order to make proper decisions and judgements?

Key words and phrases: actuarial science, artificial …

Assessing Methods And Tools To Improve Reporting, Increase Transparency, And Reduce Failures In Machine Learning Applications In Healthcare, Christian Garbin

Electronic Theses and Dissertations 2020 - Present

Artificial intelligence (AI) had a few false starts – the AI winters of the 1970s and 1980s. We are now in what looks like an AI summer. There are many useful applications of AI in the field. But there are still unfulfilled promises and outright failures. From self-driving cars that work only in constrained cases, to medical image analysis products that would replace radiologists but never did, we still struggle to translate successful research into successful real-world applications. The software engineering community has accumulated a large body of knowledge over the decades on how to develop, release, and maintain products. …

Modeling Ground Elevation Of Louisiana Coastal Wetlands And Analyzing Relative Sea Level Rise Inundation Using Rset-Mh And Lidar Measurements, Jing Liu

Electronic Theses and Dissertations 2020 - Present

The Louisiana coastal ecosystem is experiencing increasing threats from human flood control construction, sea-level rise (SLR), and subsidence. Louisiana lost about 4,833 km2 of coastal wetlands from 1932 to 2016, and concern exists whether remaining wetlands will persist while facing the highest rate of relative sea-level rise (RSLR) in the world. Restoration aimed at rehabilitating the ongoing and future disturbances is currently underway through the implementation of the Coastal Wetlands Planning Protection and Restoration Act of 1990 (CWPPRA). To effectively monitor the progress of projects in CWPPRA, the Coastwide Reference Monitoring System (CRMS) was established in 2006. To date, more …

Multifaceted Embedding Learning For Networked Data And Systems, Min Shi

Electronic Theses and Dissertations 2020 - Present

Network embedding or representation learning is important for analyzing many real-world applications and systems, i.e., social networks, citation networks and communication networks. It targets at learning low-dimensional vector representations of nodes with preserved graph structure (e.g., link relations) and content (e.g., texts) information. The derived node representations can be directly applied in many downstream applications, including node classification, clustering and visualization. In addition to the complex network structures, nodes may have rich non structure information such as labels and contents. Therefore, structure, label and content constitute different aspects of the entire network system that reflect node similarities from multiple complementary …

A Probabilistic Machine Learning Framework For Cloud Resource Selection On The Cloud, Syeduzzaman Khan

University of the Pacific Theses and Dissertations

The execution of the scientific applications on the Cloud comes with great flexibility, scalability, cost-effectiveness, and substantial computing power. Market-leading Cloud service providers such as Amazon Web service (AWS), Azure, Google Cloud Platform (GCP) offer various general purposes, memory-intensive, and compute-intensive Cloud instances for the execution of scientific applications. The scientific community, especially small research institutions and undergraduate universities, face many hurdles while conducting high-performance computing research in the absence of large dedicated clusters. The Cloud provides a lucrative alternative to dedicated clusters, however a wide range of Cloud computing choices makes the instance selection for the end-users. This thesis …