Digital Commons Network^™

Influential Factors And Predicting Dose Delivery Accuracy For Imaging And Radiation Oncology Core’S Phantom Program Using Machine Learning, Hunter Mehrens

Dissertations and Theses (Open Access)

IROC’s mission is to help ensure consistent and comparable, high-quality radiotherapy across clinics that participate in national clinical trials. To obtain this mission, IROC’s phantom program provides a third-party end-to-end check of the clinical workflow of a patient receiving radiotherapy. The goal of the phantom audit is to compare the dose delivered to the dose planned by the treatment system ensuring dose delivery accuracy. While IROC’s phantoms are better equipped to catch dose delivery errors compared to a clinic’s QA process, the end-to-end process and reporting of results is time-consuming creating a bottleneck for clinical trial participation. Furthermore, IROC’s passing …

Exploratory Analysis In Rio Grande Valley Real Estate Development, Mathew C. Sosa

Theses and Dissertations

The aim of this thesis is to apply exploratory data analysis and machine learning (ML) to answer critical questions in real estate development within the Rio Grande Valley (RGV). The real estate development sector is highly dynamic and relies on multiple integrated systems and planning to bring new homes to the market. Customer Relationship Management (CRM) software and real estate listing services, such as Redfin, are utilized to manage the customer lifecycle and analyze the local market, respectively. Two of the most crucial aspects of the customer lifecycle are the first home tour and deal closing. This paper explores the …

Exploring Telehealth Utilization Through Data Analytics, Statistical Analyses, And Machine Learning Techniques, Aysenur Betul Cengil

Graduate Theses and Dissertations

This dissertation investigates the utilization of telehealth services, initially focusing on the Arkansas healthcare system and then extending the analysis nationwide. It aims to understand the factors influencing telehealth adoption and its impact on healthcare delivery. After examining telehealth utilization in Arkansas from 2018 to 2022, the research utilizes a comprehensive dataset from Epic Cosmos, which includes a wide range of patient and visit data from multiple healthcare facilities across the United States from 2018 to 2023. This timeframe allows for a detailed analysis of telehealth trends before, during, and after the COVID-19 pandemic. In Chapter 2, we analyze key …

A Multimodal Foundation Agent For Financial Trading : Tool-Augmented, Diversified, And Generalist, Wentao Zhang, Lingxuan Zhao, Haochong Xia, Shuo Sun, Jiaze Sun, Molei Qin, Xinyi Li, Yuqing Zhao, Yilei Zhao, Xinyu Cai, Longtao Zheng, Xinrun Wang, Bo An

Research Collection School Of Computing and Information Systems

Financial trading is a crucial component of the markets, informed by a multimodal information landscape encompassing news, prices, and Kline charts, and encompasses diverse tasks such as quantitative trading and high-frequency trading with various assets. While advanced AI techniques like deep learning and reinforcement learning are extensively utilized in finance, their application in financial trading tasks often faces challenges due to inadequate handling of multimodal data and limited generalizability across various tasks. To address these challenges, we present FinAgent, a multimodal foundational agent with tool augmentation for financial trading. FinAgent's market intelligence module processes a diverse range of data-numerical, textual, …

Kilonova Modeling And Parameter Inference, Marko Ristic

Theses

This dissertation details the generation of a kilonova simulation training library and the training of subsequent machine learning emulators used for multidimensional interpolation. We begin with a Gaussian process interpolation methodology and apply that emulator for Bayesian inference with the AT 2017gfo light-curve dataset. We then expand on our emulator interpolation methodology, replacing the scalar Gaussian process emulator with a vector neural network emulator for light-curve generation. Our neural network emulator results are localized to a much more narrow region of the parameter space, prompting a detailed supportive investigation of the systematic uncertainty associated with our inference approach. We then …

Kritisamhita: A Machine Learning Dataset Of South Indian Classical Music Audio Clips With Tonic Classification, Samhita Konduri, Kriti V. Pendyala, Vishnu S. Pendyala

Faculty Research, Scholarly, and Creative Activity

There are currently a limited number of Indian classical music datasets, especially those large enough and with useful annotations, particularly the subtler ones, such as the tonic, for training classification or prediction models. The dataset described in this paper is created with useful tonic annotations, to fill this gap. The tonic pitch, or base pitch, plays an important role in music, so much so that it is sometimes called the keynote. The vocalists and the accompanying instrumental ensemble are fine-tuned to this keynote to render the composition. The first and second authors of this paper, who are vocalists themselves, recorded …

Ensemble Machine Learning At The Edge Using The Codec Classifier Structure And Weak Learners Guided By Mutual Information, Aj Beckwith

All Graduate Theses and Dissertations, Fall 2023 to Present

The Codec Classifier is a low-computation, low-memory tree ensemble method that dramatically improves feasibility of image classification on resource-constrained edge devices. It achieves advantages over other tree ensemble methods due the separation of encoder and decoder tasks in the classifier. The encoder partitions feature space, and the decoder labels the regions in the partition. This functional separation of tasks enables the encoder design (partitioning) to be guided by maximizing the mutual information (MI) between class labels and the features (i.e. the encoded representation of the data) without regard to the error performance of the classifier. Experiments show maximizing MI leads …

Enhancing Monthly Streamflow Prediction Using Meteorological Factors And Machine Learning Models In The Upper Colorado River Basin, Saichand Thota

All Graduate Theses and Dissertations, Fall 2023 to Present

Understanding and predicting streamflow along river basins is vital for planning future developments and ensuring safety, especially with climate change challenges. Our study focused on forecasting streamflow at Lees Ferry, a key location along the Colorado River in the Upper Colorado River Basin. We employed four machine learning models - Random Forest Regression, Long short-term memory, Gated Recurrent Unit, and Seasonal Auto-Regressive Integrated Moving Average; and combined historical streamflow data with meteorological factors such as snow water equivalent, temperature, and precipitation. Our analysis spanned 30 years of data from 1991 to 2020.

Our findings revealed that the Random Forest Regression …

Advancing Quantitative Approaches For Estimating Avian Population Responses To Environmental Change Using A Data-Rich Species: The American White Pelican, Aimee Michele Van Tatenhove

All Graduate Theses and Dissertations, Fall 2023 to Present

Advancements in wildlife data collection technology and analysis are helping us understand how human-caused environmental change is impacting bird species. Yet data collection for many species remains challenging, and often the data are difficult to analyze. Improved methods for collecting and analyzing avian data are needed to understand how species respond to environmental change. However, before applying new methods to poorly understood species, it is crucial to test methods on well-studied species to ensure their effectiveness. The American White Pelican is a well-studied species that is ideal for testing new analysis methods. Pelicans have been studied extensively due to conservation …

Explainable Ai For Cybersecurity Automation, Intelligence And Trustworthiness In Digital Twin: Methods, Taxonomy, Challenges And Prospects, Iqbal H. Sarker, Helge Janicke, Ahmad Mohsin, Asif Gill, Leandros Maglaras

Research outputs 2022 to 2026

Digital twins (DTs) are an emerging digitalization technology with a huge impact on today's innovations in both industry and research. DTs can significantly enhance our society and quality of life through the virtualization of a real-world physical system, providing greater insights about their operations and assets, as well as enhancing their resilience through real-time monitoring and proactive maintenance. DTs also pose significant security risks, as intellectual property is encoded and more accessible, as well as their continued synchronization to their physical counterparts. The rapid proliferation and dynamism of cyber threats in today's digital environments motivate the development of automated and …

Increasing The Robustness Of Machine Learning By Adversarial Attacks, Gourab Mukhopadhyay

Theses and Dissertations

By perturbation or physical attacks any machine can be fooled into predicting something else other than the intended output. There are training data based on which the model is trained to predict unknown things. The objective was to create noises and shades of different levels on the images and do experiments for measuring accuracy and making the model classify the traffic signs. When it comes to adding shades to the pictures, pixels were modified for three different layers of the pictures. The experiment also shows that with the shadows getting deeper, the accuracies drop significantly. Here, some changes in pixels …

A New Approach: Ordinal Predictive Maintenance With Ensemble Binary Decomposition (Opmeb), Ozlem Ece Yurek, Derya Birant

Turkish Journal of Electrical Engineering and Computer Sciences

Predictive maintenance (PdM), a fundamental element of modern industrial systems, employs machine learning to monitor equipment conditions, estimate failure probabilities, and optimize maintenance schedules. Its core objective is to enhance equipment reliability, extend lifespan, and minimize costs through data-driven insights by enabling efficient maintenance scheduling, reducing downtime, and optimizing resource allocation. In this paper, we propose a novel ordinal predictive maintenance with ensemble binary decomposition (OPMEB) method for the PdM domain, considering the hierarchical nature of class labels reflecting the machine's health status, including categories like healthy, low risk, moderate risk, and high risk. The proposed OPMEB method was validated …

A Method For Predicting The Tar Yield Of Tar-Rich Coals Based On The Bp Neural Network Using Multiple Indicators Of Coal Petrography And Coal Quality, Qiao Junwei, Wang Changjian, Zhao Hongchao, Shi Qingmin, Zhang Yu, Fan Qi, Wang Duo, Yuan Dandan

Coal Geology & Exploration

Objective Tar yield, the most important coal quality parameter for coal utilization through low-temperature pyrolysis, determines the clean utilization of tar-rich coals. However, various constraints result in limited test data on tar yield in the geological exploration stage of coals, substantially restricting the fine-scale assessment and efficient utilization of tar-rich coals. Methods To achieve more scientific and accurate fine-scale tar-rich coal assessments, this study examined 1073 sets of lithotype and coal quality data obtained previously from a Jurassic coalfield in northern Shaanxi. From these data, 141 sets with 20 lithotype and coal quality parameters regarding macerals, proximate analysis, ultimate analysis, …

Machine Learning Prediction Of Copper Ion Interference With Mercury Ion Fluorescence Signals In Food Heavy Metal Detection, Song Fangliang, Liang Ying, Dong Jie, Wang Xuejie, Qian Jie

Food and Machinery

Objective: To construct an artificial intelligence prediction model to predict the selectivity of fluorescent probes for Hg²⁺ in a complex food testing environment in the presence of Cu²⁺ interference. Methods: Fluorescent probe technology combined with seven advanced classical machine learning models was used to predict and analyze the selectivity of the probe for Hg²⁺ in the presence of Cu²⁺ interference, and to compare the prediction effect of each model and select the optimal model. Results: Efficient models with accuracies of 0.786 and 0.810 in the cross-validation and test sets were successfully established based on Molecular 2D …

Predicting Choroidal Nevus Transformation To Melanoma Using Machine Learning, Prashant D. Tailor, Piotr K. Kopinski, Haley S. D'Souza, David A. Leske, Timothy W. Olsen, Carol L. Shields, Jerry A. Shields, Lauren A. Dalvin

Wills Eye Hospital Papers

PURPOSE: To develop and validate machine learning (ML) models to predict choroidal nevus transformation to melanoma based on multimodal imaging at initial presentation.

DESIGN: Retrospective multicenter study.

PARTICIPANTS: Patients diagnosed with choroidal nevus on the Ocular Oncology Service at Wills Eye Hospital (2007-2017) or Mayo Clinic Rochester (2015-2023).

METHODS: Multimodal imaging was obtained, including fundus photography, fundus autofluorescence, spectral domain OCT, and B-scan ultrasonography. Machine learning models were created (XGBoost, LGBM, Random Forest, Extra Tree) and optimized for area under receiver operating characteristic curve (AUROC). The Wills Eye Hospital cohort was used for training and testing (80% training-20% testing) with …

Toward Concurrent Identification Of Human Activities With A Single Unifying Neural Network Classification: First Step, Andrew Smith, Musa Azeem, Chrisogonas O. Odhiambo, Pamela J. Wright Phd, Ms, Med, Rn, Cen, Hanim E. Diktas, Spencer Upton, Corby K. Martin, Brett Froeliger, Cynthia F. Corbett, Homayoun Valafar

Publications

The characterization of human behavior in real-world contexts is critical for developing a comprehensive model of human health. Recent technological advancements have enabled wearables and sensors to passively and unobtrusively record and presumably quantify human behavior. Better understanding human activities in unobtrusive and passive ways is an indispensable tool in understanding the relationship between behavioral determinants of health and diseases. Adult individuals (N = 60) emulated the behaviors of smoking, exercising, eating, and medication (pill) taking in a laboratory setting while equipped with smartwatches that captured accelerometer data. The collected data underwent expert annotation and was used to train a …

The Newgeneratortm Decentralized Wastewater Treatment System For Non-Sewered Sanitation: Technology Advancement Through Field Evaluation And Modeling, Hsiang-Yang Shyu

USF Tampa Graduate Theses and Dissertations

Non-sewered sanitation systems (NSSS) offer innovative solutions to sanitation challenges in areas lacking basic facilities, utilizing advanced treatment technologies for on-site water reuse. The NEWgenerator (NG), an advanced NSSS developed at the University of South Florida under the Bill & Melinda Gates Foundation’s Reinventing the Toilet Challenge, integrates an anaerobic membrane bioreactor (AnMBR), an ion exchange-based nutrient capture system (NCS), and an electrochlorinator for final disinfection. This study builds on previous field trials of the NG system, focusing on developing, evaluating, and optimizing its water reuse capabilities through field trials, system dynamics modeling, and advanced monitoring techniques.

In the first …

Identification And Characterization Of Intrinsically Disordered Protein Regions, Guy Wayne Dayhoff Ii

USF Tampa Graduate Theses and Dissertations

This dissertation investigates protein intrinsic disorder and intrinsically disordered protein regions (IDPRs) through the development and application of advanced computational and experimental techniques. Chapter 1 provides an introduction to protein intrinsic disorder, outlining the historical context and fundamental concepts that highlight the importance of intrinsically disordered proteins (IDPs) and IDPRs in various biological processes. Chapter 2 focuses on the rapid prediction and analysis of protein intrinsic disorder. We introduce RIDAO (Rapid Intrinsic Disorder Analysis Online), a high-efficiency web-based tool that integrates multiple disorder predictors. RIDAO significantly outperforms existing predictors in computational efficiency, making it suitable for large-scale proteomic studies. We …

Peatmoss: A Dataset And Initial Analysis Of Pre-Trained Models In Open-Source Software, Wenxin Jiang, Jerin Yasmin, Jason Jones, Nicholas Synovic, Jiashen Kuo, Nathaniel Bielanski, Yuan Tian, George K. Thiruvathukal, James C. Davis

Computer Science: Faculty Publications and Other Works

The development and training of deep learning models have become increasingly costly and complex. Consequently, software engineers are adopting pre-trained models (PTMs) for their downstream applications. The dynamics of the PTM supply chain remain largely unexplored, signaling a clear need for structured datasets that document not only the metadata but also the subsequent applications of these models. Without such data, the MSR community cannot comprehensively understand the impact of PTM adoption and reuse. This paper presents the PeaTMOSS dataset, which comprises metadata for 281,638 PTMs and detailed snapshots for all PTMs with over 50 monthly downloads (14,296 PTMs), along with …

Discrimination Of Deposit Types Using Magnetite Geochemistry Based On Machine Learning, Peng Wang, Shang Guo Su, Guan Zhi Wang, Yang Yang Dong, Danlin Yu

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

The application of trace elements in magnetite for deposit genesis research is significant, highlighting its potential as a valuable mineral exploration tool. However, traditional low-dimensional analysis methods are not effective in revealing the genetic types of deposits using magnetite trace elements, as they fail to fully utilize the rich high-dimensional information provided by magnetite trace element analysis. To address this limitation, we implemented a supervised machine learning method, eXtreme Gradient Boosting (XGBoost), to correlate the multi-element composition of magnetite with deposit types. Our study encompassed 3,865 magnetite trace element datasets from six distinct deposit types (BIF, IOA, IOCG, magmatic, porphyry, …

Toward Concurrent Identification Of Human Activities With A Single Unifying Neural Network Classification: First Step, Andrew Smith, Musa Azeem, Chrisogonas O. Odhiambo, Pamela J. Wright, Hanim E. Diktas, Spencer Upton, Corby K. Martin, Brett Froeliger, Cynthia F. Corbett, Homayoun Valafar

Clinical Research Faculty Publications

The characterization of human behavior in real-world contexts is critical for developing a comprehensive model of human health. Recent technological advancements have enabled wearables and sensors to passively and unobtrusively record and presumably quantify human behavior. Better understanding human activities in unobtrusive and passive ways is an indispensable tool in understanding the relationship between behavioral determinants of health and diseases. Adult individuals (N = 60) emulated the behaviors of smoking, exercising, eating, and medication (pill) taking in a laboratory setting while equipped with smartwatches that captured accelerometer data. The collected data underwent expert annotation and was used to train a …

Enhancing Adult Learner Success In Higher Education Through Decision Tree Models: A Machine Learning Approach, Emily Barnes, James Hutson, Karriem Perry

Faculty Scholarship

This article explores the use of machine learning, specifically Classification and Regression Trees (CART), to address the unique challenges faced by adult learners in higher education. These learners confront socio-cultural, economic, and institutional hurdles, such as stereotypes, financial constraints, and systemic inefficiencies. The study utilizes decision tree models to evaluate their effectiveness in predicting graduation outcomes, which helps in formulating tailored educational strategies. The research analyzed a comprehensive dataset spanning the academic years 2013–2014 to 2021–2022, evaluating the predictive accuracy of CART models using precision, recall, and F1 score. Findings indicate that attendance, age, and Pell Grant eligibility are key …

Multi-Case Study Of Left-Flank Boundaries Within Supercells, Peyton B. Stevenson

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

This study investigates the prevalence and significance of forward-flank convergence boundaries (FFCBs) and left-flank convergence boundaries (LFCBs) in shaping the structure and intensity of supercells, using observational data from various field projects. Unlike previous research focusing on individual cases, this study examines a diverse range of cases to provide comprehensive insights into the relationship between these boundaries and supercell characteristics such as intensity, longevity, and tornadogenesis. By analyzing high-resolution surface data, the research addresses the frequency, location, and intensity of these boundaries, and their impact on pseudo vertical vorticity, pseudo convergence, and density gradients. A total of 228 boundary identifications …

Identification Of Immune-Associated Biomarkers Of Diabetes Nephropathy Tubulointerstitial Injury Based On Machine Learning: A Bioinformatics Multi-Chip Integrated Analysis, Lin Wang, Jiaming Su, Zhongjie Liu, Shaowei Ding, Yaotan Li, Baoluo Hou, Yuxin Hu, Zhaoxi Dong, Jingyi Tang, Hongfang Liu, Weijing Liu

Faculty, Staff and Student Publications

BACKGROUND: Diabetic nephropathy (DN) is a major microvascular complication of diabetes and has become the leading cause of end-stage renal disease worldwide. A considerable number of DN patients have experienced irreversible end-stage renal disease progression due to the inability to diagnose the disease early. Therefore, reliable biomarkers that are helpful for early diagnosis and treatment are identified. The migration of immune cells to the kidney is considered to be a key step in the progression of DN-related vascular injury. Therefore, finding markers in this process may be more helpful for the early diagnosis and progression prediction of DN.

METHODS: The …

Efficient Machine Learning On Scientific Data Using Bayesian Optimization, Rui Xin

Theses and Dissertations

Deep Learning is pivotal in advancing data analysis across various scientific fields, from genomics to materials discovery. Despite its widespread use, efficiently learning from limited data and operating under resource constraints remains a significant challenge, often limiting its full potential in environments where data is scarce or resources are restricted. This dissertation explores Active Learning and Automated Machine Learning (AutoML) powered by Bayesian Optimization to enhance the efficiency of machine learning across multiple disciplines. It focuses on algorithm optimization and data management through three interconnected studies. In the first study, we investigate how data management technique - active learning helps …

Configurable Mirror Descent : Towards A Unification Of Decision Making, Pengdeng Li, Shuxin Li, Chang Yang, Xinrun Wang, Hau Chan, Bo An

Research Collection School Of Computing and Information Systems

Decision-making problems, categorized as single-agent, e.g., Atari, cooperative multi-agent, e.g., Hanabi, competitive multi-agent, e.g., Hold’em poker, and mixed cooperative and competitive, e.g., football, are ubiquitous in the real world. Although various methods have been proposed to address the specific decision-making categories, these methods typically evolve independently and cannot generalize to other categories. Therefore, a fundamental question for decision-making is: Can we develop a single algorithm to tackle ALL categories of decision-making problems? There are several main challenges to address this question: i) different decision-making categories involve different numbers of agents and different relationships between agents, ii) different categories have different …

Label-Free Surface-Enhanced Raman Spectroscopy Coupled With Machine Learning Algorithms In Pathogenic Microbial Identification: Current Trends, Challenges, And Perspectives, Jia Wei Tang, Quan Yuan, Xin Ru Wen, Muhammad Usman, Alfred Chin Yen Tay, Liang Wang

Research outputs 2022 to 2026

Infectious diseases caused by microbial pathogens remain a primary contributor to global health burdens. Prompt control and effective prevention of these pathogens are critical for public health and medical diagnostics. Conventional microbial detection methods suffer from high complexity, low sensitivity, and poor selectivity. Therefore, developing rapid and reliable methods for microbial pathogen detection has become imperative. Surface-enhanced Raman Spectroscopy (SERS), as an innovative non-invasive diagnostic technique, holds significant promise in pathogenic microorganism detection due to its rapid, reliable, and cost-effective advantages. This review comprehensively outlines the fundamental theories of Raman Spectroscopy (RS) with a focus on label-free SERS strategy, reporting …

Mesostructure Reconstruction Of Prepreg Platelet Molded Composite With Artificial Intelligence, Richard Larson

Mechanical & Aerospace Engineering Theses & Dissertations

Prepreg platelet molded composites (PPMC) are long, discontinuous fiber reinforced polymer materials. PPMC are an important subcategory of composite materials as they are processible into geometrically complex structures and can be produced via high-throughput manufacturing processes, however they have higher stiffness and strength as compared to traditional discontinuous fiber reinforced polymers. However, there is inherent randomness in the structure of PPMCs and as such, PPMC parts frequently require per part testing that is cost prohibitive.

Herein, a method using artificial intelligence is proposed as a more cost-effective method of inspecting PPMC parts. Different artificial intelligence (AI) architectures are explored to …

Considerations For Quality Control Monitoring Of Machine Learning Models In Clinical Practice, Louis Faust, Patrick Wilson, Shusaku Asai, Sunyang Fu, Hongfang Liu, Xiaoyang Ruan, Curt Storlie

Faculty, Staff and Student Publications

Integrating machine learning (ML) models into clinical practice presents a challenge of maintaining their efficacy over time. While existing literature offers valuable strategies for detecting declining model performance, there is a need to document the broader challenges and solutions associated with the real-world development and integration of model monitoring solutions. This work details the development and use of a platform for monitoring the performance of a production-level ML model operating in Mayo Clinic. In this paper, we aimed to provide a series of considerations and guidelines necessary for integrating such a platform into a team's technical infrastructure and workflow. We …

Foxann: A Method For Boosting Neural Network Performance, Mahmood A. Jumaah, Yossra H. Ali, Tarik A. Rashid, S. Vimal

Journal of Soft Computing and Computer Applications

Artificial neural networks play a crucial role in machine learning and there is a need to improve their performance. This paper presents FOXANN, a novel classification model that combines the recently developed Fox optimizer with ANN to solve ML problems. Fox optimizer replaces the backpropagation algorithm in ANN; optimizes synaptic weights; and achieves high classification accuracy with a minimum loss, improved model generalization, and interpretability. The performance of FOXANN is evaluated on three standard datasets: Iris Flower, Breast Cancer Wisconsin, and Wine. The results presented in this paper are derived from 100 epochs using 10-fold cross-validation, ensuring that all dataset …