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Machine Learning Based Applications For Data Visualization, Modeling, Control, And Optimization For Chemical And Biological Systems, Yan Ma

LSU Doctoral Dissertations

This dissertation report covers Yan Ma’s Ph.D. research with applicational studies of machine learning in manufacturing and biological systems. The research work mainly focuses on reaction modeling, optimization, and control using a deep learning-based approaches, and the work mainly concentrates on deep reinforcement learning (DRL). Yan Ma’s research also involves with data mining with bioinformatics. Large-scale data obtained in RNA-seq is analyzed using non-linear dimensionality reduction with Principal Component Analysis (PCA), t-Distributed Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation and Projection (UMAP), followed by clustering analysis using k-Means and Hierarchical Density-Based Spatial Clustering with Noise (HDBSCAN). This report focuses …

An Assessment Of The Hydrological Trends Using Synergistic Approaches Of Remote Sensing And Model Evaluations Over Global Arid And Semi-Arid Regions, Wenzhao Li, Hesham El-Askary, Rejoice Thomas, Surya Prakash Tiwari, Karuppasamy Manikandan, Thomas Piechota, Daniele Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

Drylands cover about 40% of the world’s land area and support two billion people, most of them living in developing countries that are at risk due to land degradation. Over the last few decades, there has been warming, with an escalation of drought and rapid population growth. This will further intensify the risk of desertification, which will seriously affect the local ecological environment, food security and people’s lives. The goal of this research is to analyze the hydrological and land cover characteristics and variability over global arid and semi-arid regions over the last decade (2010–2019) using an integrative approach of …

Generating Adversarial Examples For Recruitment Ranking Algorithms, Anahita Samadi

Computer Science and Engineering Theses - Archive

There is no doubt that recruitment process plays an important role for both employers and applicants. Based on huge number of job candidates and open vacancies, recruitment process is expensive, time consuming and stressful for both applicants and companies. In today’s world so many recruitment processes are based on machine learning techniques. Therefore, it is very important to ensure security of these algorithms. Adversarial examples are proposed to examine vulnerability of machine leaning algorithms. Many research studies have been done on evaluating the resistance of artificial intelligence-based systems, in computer vision and text classification, against adversarial examples. However, to the …

Semi-Automatic Hand Pose Estimation Using A Single Depth Camera, Giffy Jerald Chris

Computer Science and Engineering Theses - Archive

This paper addresses the problem of 3D hand pose annotations using a single depth camera. Although hand pose estimation methods rely critically on accurate 3D training data, creating such reliable training data is challenging and labor intensive. We propose a semi-automatic method for efficiently and accurately labeling the 3D hand key-points in a hand depth video. The process starts by selecting a subset of frames that are representative of all the frames in the dataset and the annotator only provides an estimate of the 2D hand key-points in these selected frames. We use this information to infer the 3D location …

Hierarchical Aggregation Of Multidimensional Data For Efficient Data Mining, Safaa Khalil Alwajidi

Dissertations

Big data analysis is essential for many smart applications in areas such as connected healthcare, intelligent transportation, human activity recognition, environment, and climate change monitoring. Traditional data mining algorithms do not scale well to big data due to the enormous number of data points and the velocity of their generation. Mining and learning from big data need time and memory efficiency techniques, albeit the cost of possible loss in accuracy. This research focuses on the mining of big data using aggregated data as input. We developed a data structure that is to be used to aggregate data at multiple resolutions. …

Facial Image Analysis Using Ratio-Fusion-Score Based Approach To Support Forensic Investigation, Deepak Waikar

Manipal Journal of Science and Technology

In recent years, the face recognition field has attained high performance in the identification of a person. Facial recognition algorithms should be able to perform even in the case of similar faces such as Look-alikes or identical twins. Twin identification becomes an important task in face recognition as twins are involved in pursuing criminal activities. The proposed framework focuses on the recognition of individual faces, and Look-alikes by finding distinctiveness of different facial features in the face by using multi-parametric anthropometry measurements. Fusion score is generated by considering the fusion of facial ratios such as image ratio and golden ratio …

Modified-Half-Normal Distribution And Different Methods To Estimate Average Treatment Effect., Jingchao Sun

Electronic Theses and Dissertations

This dissertation consists of three projects related to Modified-Half-Normal distribution and causal inference. In my first project, a new distribution called Modified-Half-Normal distribution was introduced. I explored a few of its distributional properties, the procedures for generating random samples based on Bayesian approaches, and the parameter estimation based on the method of moments. The second project deals with the problem of selection bias of average treatment effect (ATE) if we use the observational data. I combined the propensity score based inverse probability of treatment weighting (IPTW) method and the directed acyclic graph (DAG) to solve this problem. The third project …

Deep Q Learning Applied To Stock Trading, Agnibh Dasgupta

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Developing a strategy for stock trading is a vital task for investors. However, it is challenging to obtain an optimal strategy, given the complex and dynamic nature of the stock market. This thesis aims to explore the applications of Reinforcement Learning with the goal of maximizing returns from market investment, keeping in mind the human aspect of trading by utilizing stock prices represented as candlestick graphs. Furthermore, the algorithm studies public interest patterns in form of graphs extracted from Google Trends to make predictions. Deep Q learning has been used to train an agent based on fused images of stock …

Acquisition, Processing, And Analysis Of Video, Audio And Meteorological Data In Multi-Sensor Electronic Beehive Monitoring, Sarbajit Mukherjee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In recent years, a widespread decline has been seen in honey bee population and this is widely attributed to colony collapse disorder. Hence, it is of utmost importance that a system is designed to gather relevant information. This will allow for a deeper understanding of the possible reasons behind the above phenomenon to aid in the design of suitable countermeasures.

Electronic Beehive Monitoring is one such way of gathering critical information regarding a colony’s health and behavior without invasive beehive inspections. In this dissertation, we have presented an electronic beehive monitoring system called BeePi that can be placed on top …

Walls Have Ears: Eavesdropping User Behaviors Via Graphics-Interrupt-Based Side Channel, Haoyu Ma, Jianwen Tian, Debin Gao, Jia Chunfu

Research Collection School Of Computing and Information Systems

Graphics Processing Units (GPUs) are now playing a vital role in many devices and systems including computing devices, data centers, and clouds, making them the next target of side-channel attacks. Unlike those targeting CPUs, existing side-channel attacks on GPUs exploited vulnerabilities exposed by application interfaces like OpenGL and CUDA, which can be easily mitigated with software patches. In this paper, we investigate the lower-level and native interface between GPUs and CPUs, i.e., the graphics interrupts, and evaluate the side channel they expose. Being an intrinsic profile in the communication between a GPU and a CPU, the pattern of graphics interrupts …

Nearest Centroid: A Bridge Between Statistics And Machine Learning, Manoj Thulasidas

Research Collection School Of Computing and Information Systems

In order to guide our students of machine learning in their statistical thinking, we need conceptually simple and mathematically defensible algorithms. In this paper, we present the Nearest Centroid algorithm (NC) algorithm as a pedagogical tool, combining the key concepts behind two foundational algorithms: K-Means clustering and K Nearest Neighbors (k- NN). In NC, we use the centroid (as defined in the K-Means algorithm) of the observations belonging to each class in our training data set and its distance from a new observation (similar to k-NN) for class prediction. Using this obvious extension, we will illustrate how the concepts of …

Unsupervised Structural Graph Node Representation Learning, Mikel Joaristi

Boise State University Theses and Dissertations

Unsupervised Graph Representation Learning methods learn a numerical representation of the nodes in a graph. The generated representations encode meaningful information about the nodes' properties, making them a powerful tool for tasks in many areas of study, such as social sciences, biology or communication networks. These methods are particularly interesting because they facilitate the direct use of standard Machine Learning models on graphs. Graph representation learning methods can be divided into two main categories depending on the information they encode, methods preserving the nodes connectivity information, and methods preserving nodes' structural information. Connectivity-based methods focus on encoding relationships between nodes, …

Traffic Time Headway Prediction And Analysis: A Deep Learning Approach, Saumik Sakib Bin Masud

Theses and Dissertations

In the modern world of Intelligent Transportation System (ITS), time headway is a key traffic flow parameter affecting ITS operations and planning. Defined as “the time difference between any two successive vehicles when they cross a given point”, time headway is used in various traffic and transportation engineering research domains, such as capacity analysis, safety studies, car-following, and lane-changing behavior modeling, and level of service evaluation describing stochastic features of traffic flow. Advanced travel and headway information can also help road users avoid traffic congestion through dynamic route planning, for instance. Hence, it is crucial to accurately model headway distribution …

A Targeted Adversarial Attack On Support Vector Machine Using The Boundary Line, Yessenia Rodriguez

Theses and Dissertations

In this thesis, a targeted adversarial attack is explored on a Support Vector Machine (SVM). SVM is defined by creating a separating boundary between two classes. Using a target class, any input can be modified to cross the “boundary line,” making the model predict the target class. To limit the modification, a percentage of an image of the target class is used to get several random sections. Using these sections, the input will be moved in small steps closer to the boundary point. The section that took the least number of steps to cause the model to predict the target …

Application Of Machine Learning Models: Stock Price Forecasting Of The Philippines' Top Six Conglomerates, Anthony Rey Llanos

Theses

The advent of digital age dramatically changed the way all aspects of commerce is conducted. From the largest multi-national conglomerates to the least small-and-medium enterprises and to the unassuming business-savvy individuals have adapted to take advantage of the benefits afforded by the resulting digital technology. Investing in, and profiting from, shares of stocks of companies listed in an organized stock exchange is one such instance. Gone are the days wherein stock investors and brokers are inseparable from their telephones to handle trades. Online platforms, powered by machine learning algorithms, have made investing in stocks not only accessible and convenient but …

Detecting Hacker Threats: Performance Of Word And Sentence Embedding Models In Identifying Hacker Communications, Susan Mckeever, Brian Keegan, Andrei Quieroz

Conference papers

Abstract—Cyber security is striving to find new forms of protection against hacker attacks. An emerging approach nowadays is the investigation of security-related messages exchanged on deep/dark web and even surface web channels. This approach can be supported by the use of supervised machine learning models and text mining techniques. In our work, we compare a variety of machine learning algorithms, text representations and dimension reduction approaches for the detection accuracies of software-vulnerability-related communications. Given the imbalanced nature of the three public datasets used, we investigate appropriate sampling approaches to boost detection accuracies of our models. In addition, we examine how …

Language-Driven Region Pointer Advancement For Controllable Image Captioning, Annika Lindh, Robert J. Ross, John D. Kelleher

Conference papers

Controllable Image Captioning is a recent sub-field in the multi-modal task of Image Captioning wherein constraints are placed on which regions in an image should be described in the generated natural language caption. This puts a stronger focus on producing more detailed descriptions, and opens the door for more end-user control over results. A vital component of the Controllable Image Captioning architecture is the mechanism that decides the timing of attending to each region through the advancement of a region pointer. In this paper, we propose a novel method for predicting the timing of region pointer advancement by treating the …

Enhanced Traffic Incident Analysis With Advanced Machine Learning Algorithms, Zhenyu Wang

Computational Modeling & Simulation Engineering Theses & Dissertations

Traffic incident analysis is a crucial task in traffic management centers (TMCs) that typically manage many highways with limited staff and resources. An effective automatic incident analysis approach that can report abnormal events timely and accurately will benefit TMCs in optimizing the use of limited incident response and management resources. During the past decades, significant efforts have been made by researchers towards the development of data-driven approaches for incident analysis. Nevertheless, many developed approaches have shown limited success in the field. This is largely attributed to the long detection time (i.e., waiting for overwhelmed upstream detection stations; meanwhile, downstream stations …

In The Margins: Reconsidering The Range And Contribution Of Diazotrophs In Nearshore Environments, Corday R. Selden

OES Theses and Dissertations

Dinitrogen (N₂) fixation enables primary production and, consequently, carbon dioxide drawdown in nitrogen (N) limited marine systems, exerting a powerful influence over the coupled carbon and N cycles. Our understanding of the environmental factors regulating its distribution and magnitude are largely based on the range and sensitivity of one genus, Trichodesmium. However, recent work suggests that the niche preferences of distinct diazotrophic (N₂ fixing) clades differ due to their metabolic and ecological diversity, hampering efforts to close the N budget and model N₂ fixation accurately. Here, I explore the range of N₂ fixation …

How Negative Sampling Provides Class Balance To Rare Event Case Data Using A Vehicular Accident Prediction Project As A Use Case Scenario, Jeremy Roland

Masters Theses and Doctoral Dissertations

Rare event case data occur at such an infrequent rate that even having high amounts of it can leave researchers starving for more information. There has always existed a tug and pull relationship among rare event case data, where a higher count of entries often leads to a lack of explanatory variables, and vice versa. In the research spectrum of rare event case probability prediction, several methods of data sampling exist to remedy the main issue of rare event case data: a lack of data to collect and learn from. The most effective methods often involve altering the distribution of …

Clustering Algorithms To Further Enhance Predictable Situational Data In Vehicular Ad-Hoc Networks, Adam Dean

Masters Theses and Doctoral Dissertations

The modern world is constantly in a state of technological revolution. Everyday some new technological idea, invention, or threat emerges. With modern computer software and hardware advancements, we have the emergence of more internet-enabled devices - or, Internet of Things (IoT) devices. We can now create large networks with any device to gather real-time information about an environment. In conjunction, modern car companies across the board have a push from public demand for a fully-autonomous car. In order to accomplish autonomy safely and effectively, Vehicular Ad-Hoc Networks (VANETs) must be established for a local group of cars and their environment …

Machine Learning And Pedometers: An Integration-Based Convolutional Neural Network For Step Counting And Detection, Basil Lin

All Theses

This thesis explores a machine learning-based approach to step detection and counting for a pedometer. Our novelty is to analyze a window of time containing an arbitrary number of steps, and integrate the detected count using a sliding window technique. We compare the effectiveness of this approach against classic deterministic algorithms. While classic algorithms perform well during regular gait (e.g. walking or running), they can perform significantly worse during semi-regular and irregular gaits that still contribute to a person’s overall step count. These non-regular gaits can make up a significant portion of the daily step count for people, and an …

Goamlp: Network Intrusion Detection With Multilayer Perceptron And Grasshopper Optimization Algorithm, Farshid Bagheri Saravi

Student Scholarship

In this paper, an intrusion detection system is introduced that uses data mining and machine learning concepts to detect network intrusion patterns. In the proposed method, an artificial neural network (ANN) is used as a learning technique in intrusion detection. The metaheuristic algorithm with the swarm-based approach is used to reduce intrusion detection errors. In the proposed method, the Grasshopper Optimization Algorithm (GOA) is used for better and more accurate learning of ANNs to reduce intrusion detection error rate. The role of the GOAMLP algorithm is to minimize the intrusion detection error in the neural network by selecting useful parameters …

New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger

Theses

Background: Much of the recent success in protein structure prediction has been a result of accurate protein contact prediction--a binary classification problem. Dozens of methods, built from various types of machine learning and deep learning algorithms, have been published over the last two decades for predicting contacts. Recently, many groups, including Google DeepMind, have demonstrated that reformulating the problem as a multi-class classification problem is a more promising direction to pursue. As an alternative approach, we recently proposed real-valued distance predictions, formulating the problem as a regression problem. The nuances of protein 3D structures make this formulation appropriate, allowing predictions …

Pathway-Extended Gene Expression Signatures Integrate Novel Biomarkers That Improve Predictions Of Patient Responses To Kinase Inhibitors, Jem Bagchee-Clark, Eliseos J. Mucaki, Tyson Whitehead, Peter Rogan

Biochemistry Publications

Cancer chemotherapy responses have been related to multiple pharmacogenetic biomarkers, often for the same drug. This study utilizes machine learning to derive multi-gene expression signatures that predict individual patient responses to specific tyrosine kinase inhibitors, including erlotinib, gefitinib, sorafenib, sunitinib, lapatinib and imatinib. Support Vector Machine learning was used to train mathematical models that distinguished sensitivity from resistance to these drugs using a novel systems biology-based approach. This began with expression of genes previously implicated in specific drug responses, then expanded to evaluate genes whose products were related through biochemical pathways and interactions. Optimal pathway-extended support vector machines predicted responses …

Pathway-Extended Gene Expression Signatures Integrate Novel Biomarkers That Improve Predictions Of Patient Responses To Kinase Inhibitors, Ashis Jem Bagchee-Clark, Eliseos J. Mucaki, Tyson Whitehead, Peter Rogan

Biochemistry Publications

No abstract provided.

Within-Field Yield Prediction For Sugarcane And Rice Focused On Precision Agriculture Applications, Felippe Hoffmann Silva Karp

LSU Master's Theses

Food and energy security are two main topics when it comes to the on-growing world population. Rice and sugarcane play an important role in this scenario since sugarcane can be used for energy production and rice is one of major staple cereals. In this scenario, Precision Agriculture (PA) management strategies aims to improve productivity, efficiency, profitability, and sustainability, and can help agriculture to fulfill the needs of the growing population in a sustainable way. However, yield maps are essential for PA, but its adoption is still very low. Thus, the main objective of this study was to evaluate the potential …

Prediction Of Mental Illness In Heart Disease Patients: Association Of Comorbidities, Dietary Supplements, And Antibiotics As Risk Factors, Jayanth Sivakumar, Saba Ahmed, Lina Begdache, Swati Jain, Daehan Won

Health & Wellness Studies Faculty Scholarship

Comorbidities, dietary supplement use, and prescription drug use may negatively (or positively) affect mental health in cardiovascular patients. Although the significance of mental illnesses, such as depression, anxiety, and schizophrenia, on cardiovascular disease is well documented, mental illnesses resulting from heart disease are not well studied. In this paper, we introduce the risk factors of mental illnesses as an exploratory study and develop a prediction framework for mental illness that uses comorbidities, dietary supplements, and drug usage in heart disease patients. Particularly, the data used in this study consist of the records of 68,647 patients with heart disease, including the …

Multimodal Data Fusion And Attack Detection In Recommender Systems, Mehmet Aktukmak

USF Tampa Graduate Theses and Dissertations

The commercial platforms that use recommender systems can collect relevant information to produce useful recommendations to the platform users. However, these sources usually contain missing values, imbalanced and heterogeneous data, and noisy observations. Such characteristics render the process of exploiting the information nontrivial, as one should carefully address them during the data fusion process. In addition to the degenerative characteristics, some entries can be fake, i.e., they can be the outcomes of malicious intents to manipulate the system. These entries should be eliminated before incorporation to any recommendation task. Detecting such malicious attacks quickly and accurately and then mitigating them …

Using Data Analytics To Predict Students Score, Nang Laik Ma, Gim Hong Chua

Research Collection School Of Computing and Information Systems

Education is very important to Singapore, and the government has continued to invest heavily in our education system to become one of the world-class systems today. A strong foundation of Science, Technology, Engineering, and Mathematics (STEM) was what underpinned Singapore's development over the past 50 years. PISA is a triennial international survey that evaluates education systems worldwide by testing the skills and knowledge of 15-year-old students who are nearing the end of compulsory education. In this paper, the authors used the PISA data from 2012 and 2015 and developed machine learning techniques to predictive the students' scores and understand the …