Digital Commons Network^™

Evaluating Large Language Models For Line-Level Vulnerability Localization, Jian Zhang, Chong Wang, Anran Li, Weisong Sun, Cen Zhang, Wei Ma, Yang Liu

Research Collection School Of Computing and Information Systems

Recently, Automated Vulnerability Localization (AVL) has attracted growing attention, aiming to facilitate diagnosis by pinpointing the specific lines of code responsible for vulnerabilities. Large Language Models (LLMs) have shown potential in various domains, yet their effectiveness in line-level vulnerability localization remains underexplored. In this work, we present the first comprehensive empirical evaluation of LLMs for AVL. Our study examines 19 leading LLMs suitable for code analysis, including ChatGPT and multiple open-source models, spanning encoder-only, encoder-decoder, and decoder-only architectures, with model sizes from 60M to 70B parameters. We evaluate three paradigms including few-shot prompting, discriminative fine-tuning, and generative fine-tuning with and …

Essays On Accelerated Failure Time Models For Recurrent Event Data, Emmanuel Masavo Djegou

Doctoral Dissertations

Recurrent event data arise in many fields such as medicine, reliability, insurance, and economics, where the same event may occur repeatedly for a subject. Accelerated Failure Time (AFT) models provide an intuitive framework for relating covariates to event times and offer a useful alternative to proportional hazards models, allowing direct prediction of event timing under right censoring. However, existing AFT extensions for recurrent events, such as accelerated gap time (AGT) models, often fail to account for interventions between events and may not capture complex temporal patterns.

In this work, we first propose a class of semiparametric AGT models incorporating an …

Robust Deep Learning One-Class Classification, Shahd Alnofaie

Graduate Studies Theses and Dissertations 2026

One-Class Classification (OCC) focuses on learning the characteristics of normal data and identifying observations that deviate from this learned pattern as anomalies. It is commonly used in applications such as medical diagnosis, cybersecurity, industrial monitoring, and fraud detection, where abnormal examples are often rare or unavailable during training. Classical approaches such as SVDD and LS-SVDD describe normal data using a hypersphere. While effective in some settings, these methods rely on shallow representations and can be sensitive to noise and contaminated observations. To address these limitations, this dissertation introduces a Deep LS-SVDD framework that combines hypersphere-based data description with deep neural …

Modeling And Mitigating Atmospheric Degradation In Computer Vision With Application In Renewable Energy Prediction, Sumit Laha

Graduate Studies Theses and Dissertations 2026

Weather-induced variability poses significant challenges to the reliability and performance of modern computational systems, particularly those relying on visual perception and environmental prediction. This dissertation focuses on enhancing computer vision and machine learning based predictive models that operate under varying atmospheric conditions. Two representative weather-impacted applications are investigated: image dehazing and solar photovoltaic (PV) power output forecasting. Image dehazing focuses on the restoration of clear, unobstructed visuals from hazy or foggy images, a task that is vital for various applications. On the other hand, photovoltaic (PV) power forecasting aims to predict future solar energy generation based on historical sky images …

Real-Time Deep Learning Detection Of Toraja Carving Motifs Using Yolo11m For Cultural Heritage Preservation, Herman Herman, Farid Wajdi Mufti, Abdul Rachman Manga, Haidawati Nasir

Knowledge Engineering and Data Science

Toraja carvings are an important part of Indonesia’s cultural heritage, rich in symbolic, aesthetic, and philosophical meaning. However, the identification and preservation of carving motifs still rely on subjective, time-consuming manual processes, limiting scalability and inconsistent knowledge transmission. From a Knowledge Engineering and Cognitive Data Science perspective, this challenge highlights the need for mechanisms that can transform visual cultural artifacts into structured, machine-interpretable knowledge. This study investigates the use of the YOLO11m model as a data-driven approach for modeling cultural knowledge through automated detection of three Toraja carving motifs: pa_tedong, pa_kapu_baka, and pa_manu_londongan using original images collected directly from traditional …

Ai-Optimized Resource Management In Next-Gen Wireless Networks, Fatemeh Lotfi

All Dissertations

Next-generation wireless networks must deliver highly adaptive, scalable, and intelligent connectivity to satisfy the heterogeneous demands of emerging services, including enhanced mobile broadband, massive machine-type communications, and ultra reliable low latency applications. The Open Radio Access Network (O-RAN) paradigm has emerged as a key enabler of this vision, introducing openness, virtualization, and artificial intelligence (AI)-driven control into the RAN ecosystem. O-RAN’s disaggregated architecture facilitates multi-vendor interoperability and empowers intelligent management through the RAN Intelligent Controller (RIC). However, achieving real-time, autonomous, and generalized optimization in such a dynamic environment remains a significant challenge due to its distributed nature, non-stationary traffic, and …

Adaptive Deep Learning In Physical Layer Applications, Ali Owfi

All Dissertations

Traditionally, signal processing models in communication systems have been designed based on solid foundations in statistics and information theory, often assuming linearity and optimizing for simplified models. However, real-world communication systems exhibit numerous imperfections and non-linearities that traditional linear models struggle to capture accurately. Deep Learning (DL)-based approaches, unconstrained by rigid mathematical models, have shown promise in optimizing system performance by accommodating specific hardware configurations and dynamic channel conditions as an alternative to the traditional methods. Despite all the recent research efforts on DL-based methods for physical layer applications, DL models have still not been widely applied to physical layer …

Instance-Adaptive Gated Fusion Of Multi-Transform Image Representations, Prince Appiah

Open Access Theses & Dissertations

This dissertation proposes the Instance-Adaptive Gated Fusion (IAGF) framework, a novel deep learning architecture for adaptive and interpretable fusion of multiple time–series image transformations. While existing methods rely on static concatenation or dataset-level optimization, IAGF introduces a learnable gating mechanism that dynamically assigns per-instance weights to Recurrence Plots (RP), Gramian Angular Summation Fields (GASF), and Gramian Angular Difference Fields (GADF). The gating layer performs a convex fusion of transformation-specific embeddings under a softmax constraint, ensuring mathematical stability and interpretability. An entropy-regularized objective prevents dominance collapse and promotes balanced exploration of transformations during training. Comprehensive experiments across eighteen benchmark datasets, spanning …

Detection Of Phase-Binning And Interpolation Artifacts In 4-Dimensional Computed Tomography Imaging Using Deep Learning And Rule-Based Approaches, Jorge Cisneros, Nathan H. Feldt, Yevgeniy Vinogradskiy, Richard Castillo, Edward Castillo

Department of Radiation Oncology Faculty Papers

BACKGROUND: Four-dimensional computed tomography (4DCT) imaging is a crucial component to lung cancer radiotherapy planning and enables CT-ventilation-based functional avoidance planning to mitigate radiation toxicity. However, 4DCT scans are frequently impaired by acquisition artifacts that corrupt downstream analyses that depend on lung segmentation and deformable image registration, such as CT-ventilation and dose accumulation.

PURPOSE: This study develops 3D deep learning models to identify phase-binning artifacts at the voxel level and a heuristic, rule-based method to identify interpolation slices within 4DCT images.

METHODS: We introduce a generator that systematically inserts synthetic phase-binning and interpolation artifacts into any artifact-free breathing phase obtained …

Physics Meets Data: Merging Physics-Based Methods With Deep Learning To Model Complex Systems, Maryam Toloubidokhti

Theses

Accurate modeling of complex systems is crucial in domains such as healthcare, where personalized diagnosis and treatment planning are essential. Traditional physics-based models provide structured, theoretically grounded insights but are often computationally intensive and constrained by simplified assumptions that limit adaptability to patient-specific conditions. In contrast, data-driven models are computationally efficient and capable of capturing complex patterns, yet they often lack interpretability and fail to incorporate essential physical principles, reducing robustness and generalization. This disconnect between mechanistic understanding and computational practicality presents significant challenges in critical applications such as healthcare, where both physical accuracy and real-time performance are vital. To …

Ai-Driven Cyber Threat Detection, Humaid Thani Almheiri

Theses

Bycreating an AI-driven method using deep learning and statistical analysis tools, this study seeks to fill important security holes in conventional intrusion detection systems. Current signature-based systems miss new and complex cyberattacks, which have significant financial and operational consequences for companies. The suggested approach detects unusual network activity in real-time by combining statistical analysis with long short-term memory networks (LSTMs), convolutional neural networks (CNNs), and statistical analysis. This study will create and test hybrid models that can identify both known and zero-day threats while reducing false positives using publicly accessible datasets like UNSW-NB15, CIC-IDS2017, and NSL-KDD. Expected results are a …

Cssa-Fusion: Channel Selective And Spatial Alignment Infrared-Visible Image Fusion, Zhen Li, Zhi Zeng, Zhongrui Xiao, Ming Wen, Zhiyuan Zhang, Yibin Tian

Research Collection School Of Computing and Information Systems

Infrared-visible image fusion aims to integrate complementary information from two modalities to generate images with enriched semantic content. However, existing methods often neglect two critical aspects: the design of a local–global feature enhancement architecture and spatial alignment. To address these challenges, we propose Channel Selective and Spatial Alignment Fusion (CSSA-Fusion), a novel framework composed of two synergistic modules. The first is a selective channel and redundancy suppression module, which introduces a dual-branch selective channel attention mechanism to jointly capture local saliency and global channel importance for enhanced feature representation, and an informativeness–redundancy separation strategy to suppress redundant information while preserving …

Exploiting The In-Distribution Embedding Space With Deep Learning And Gaussian Discriminant Analysis For An Out-Of-Distribution Malware Attach Detection, Tosin Olusola Ige

Open Access Theses & Dissertations

State-of-the-art machine and deep learning models generally perform well on previously seen data, albeit with wrong close world assumption that all real-world data are from previously seen train and validation samples, hence there poor performance when exposed to data which deviates from previously seen training and validation set. This is clearly evident in the domain of cybersecurity where the world continues to experience several high profile malware attacks despite advancement in state-of-the-art research. The reason being that the constant evolvement of innovation in the development of tools and method deployed to carry out various attacks had given hackers and other …

Hybrid Learning For Rough Terrain Navigation Of Actively Articulated Wheeled Vehicles, Dhruv Mehta

All Dissertations

Conventional wheeled ground vehicles have been used for rough terrain navigation in the recent years. They consist of a chassis connected to wheels through passive, semi-active, or active suspension systems. However, their fixed configurations limit mobility and maneuverability, constraining their ability to autonomously navigate diverse and rough terrains. Autonomous Ground Vehicles (AGVs) face significant challenges in this regard, including varying terrain roughness, soil hardness, and obstacle crossing.

To address these limitations, Actively Articulated Wheeled Vehicle (AAWV) architectures have recently emerged, offering real-time geometric adaptability. AAWVs have chassis and wheels connected via articulated serial or parallel linkages. However, increased articulation introduces …

Cnn Based Deep Learning Modeling With Explainability Analysis For Detecting Fraudulent Blockchain Transactions, Mohammad Hasan, Mohammad Shahriar Rahman, Mohammad Jabed Morshed Chowdhury, Iqbal H. Sarker

Research outputs 2022 to 2026

In the era of growing cryptocurrency adoption, Blockchain has emerged as a leading player in the digital payment landscape. However, this widespread popularity also brings forth various security challenges, including the need to safeguard against fraudulent activities. One of the paramount challenges in this regard is the detection of fraudulent transactions within the realm of Bitcoin data. This task significantly influences the trust and security of digital payments. Yet, it's a formidable challenge given the relatively low occurrence of fraudulent Bitcoin transactions. While deep learning techniques have demonstrated their prowess in fraud detection, there remains a scarcity of studies exploring …

Artificial Intelligence For Reliability: Predictive Health Maintenance And Geolocation In Gps-Denied Environments, Rafael Toche Pizano

Graduate Theses and Dissertations

In this dissertation, we explore the potential of machine learning and deep learning techniques to enhance the performance and robustness of applications across two major domains. By addressing the challenges within these fields, we demonstrate that we can leverage learning algorithms to obtain substantial improvements in accuracy and robustness. First, we tackle a problem in the field of predictive health maintenance. We propose a novel auto encoder and neural network based methodology to predict failure times in complex aviation systems to learn to distinguish between normal and abnormal operational behavior, and use this information to inform the neural network to …

Improved Accuracy For Myocardial Blood Flow Mapping With Deep Learning-Enabled Cmr Arterial Spin Labeling (Deepmasl): Validation By Microsphere In Vivo, Ran Li, Caleb Berberet, Qi Huang, Pamela K Woodard, Jie Zheng

2020-Current year OA Pubs

BACKGROUND: Current myocardial arterial spin labeling (ASL) methods are sensitive to noise (background and physiology), which limits the accuracy of myocardial blood flow (MBF) measurement. In this study, we demonstrated a new deep learning-enabled myocardial ASL approach (DeepMASL) and evaluated its accuracy to quantify MBF in a canine model of coronary arterial disease in vivo. The reference method was invasive microsphere measurements.

METHODS: Eighteen mongrel dogs were divided into two groups: healthy (n = 9) and coronary stenosis (n = 9). The latter was induced in an open-chest model with 3 types of stenosis: 50% (n= 3), 70% (n = …

Deep Learning Reveals How Cells Pull, Buckle, And Navigate Fibrous Environments, Abinash Padhi, Arka Daw, Atharva Agashe, Medha Sawhney, Maahi M Talukder, Mehran M H Pour, Mohammad Jafari, Guy M Genin, Farid Alisafaei, Sohan Kale, Anuj Karpatne, Amrinder S Nain

2020-Current year OA Pubs

Cells in tissues navigate fibrous environments fundamentally differently than they do on flat substrates, but the establishment of cell forces in physiological fibrous settings remains poorly understood. Although factors such as the stiffness of the extracellular matrix (ECM) are known to drive behaviors, including cell motility on flat nonfibrous substrates, the interplay between fiber architecture and stiffness in fibrous ECM is not known. Here, we find that in fibrous environments, the directionality of mechanical forces overrides ECM stiffness as the primary regulator of contractility in migrating cells. Using an approach combining phase microscopy with deep learning to map forces in …

Deciphering Rna Modification And Post-Transcriptional Regulation With Netrnapan, Haodong Xu, Wankun Deng, Ruifeng Hu, Binfeng Liu, Wenchao Zhang, Lujuan Wang, Lin Qi, Xiaolei Ren, Chao Tu, Zhihong Li, Zhongming Zhao

Faculty, Staff and Student Publications

RNA modification, which is evolutionarily conserved, is crucial for modulating various biological functions and disease pathogenesis. High resolution transcriptome-wide mapping of RNA modifications has facilitated both data resources and computational prediction of RNA modification. While these prediction algorithms are promising, they are limited in interpretability or generalizability, or the capacity for discovering novel post-transcriptional regulations. Here, we present NetRNApan, a deep learning framework for RNA modification site prediction, motif discovery and trans-regulatory factor identification. Using m5U profiles generated by FICC-seq and miCLIP-seq technologies and single-base resolution m6A sites from multiple experiments as cases, we demonstrated the accuracy of NetRNApan with …

Spatio-Temporal Gcn With Softmax Classifier For Skeleton-Based Human Action Recognition, Kabul Khudaybergenov, Avazjon Marakhimov, Zahriddin Muminov

Chemical Technology, Control and Management

Skeleton-based human action recognition is an important research area with many practical applications. Most existing methods rely on single representations of skeletal sequences, which cannot totally obtain all the complex features of human movements. This paper presents LFHAR (Latent Features for Human Action Recognition), a new framework that uses multiple spatio-temporal latent representations to improve the extraction of action features. Our method captures how skeletal poses change over time and combines motion information from both individual joints and connected body parts. The proposed approach applies graph-based processing to each skeleton frame in a sequence, then arranges the resulting graph features …

Intentional Creation Of Suboptimal, Realistic Dose Distributions, Skylar S Gay, Mary P Gronberg, Raymond Mumme, Beth M Beadle, Anuja Jhingran, Tze Yee Lim, Zhiqian H Yu, Christine Chung, Meena Khan, Chelsea Pinnix, Sanjay Shete, Brent Parker, Tucker J Netherton, Carlos E Cardenas, Laurence E Court

Faculty, Staff and Student Publications

Background: Radiation oncology residents report a lack of understanding and confidence in assessing radiotherapy plan quality. A contributing factor is the environment in which plan review is taught during residency, that is, routine clinical practice, which does not provide ample time for self-guided practice in a low-stakes setting. Expertise in plan review requires diverse case presentation and many examples, which are often not achievable in smaller programs and for less common cancer types. As plan quality affects patient outcomes, it is important to address these pitfalls in the education of residents on plan review.

Purpose: To address the identified pitfalls …

Local Wisdom-Based Character Education Module With Interactive Technology Through A Deep Learning Approach, Adi Tri Atmaja, Fathul Niam

Jurnal Pendidikan: Teori, Penelitian, dan Pengembangan

The purpose of this study is to develop and test a character education module that integrates local wisdom values in Blitar with interactive technology through a deep learning approach. The method used is the ADDIE model research and development. The module's feasibility is obtained from the results of expert validation, assessment of attractiveness and practicality from users. The results obtained from language experts were 88.70%, material experts were 92.00%, and design experts were 85%. The results obtained from large group tests on the module's attractiveness aspect in grade 4 reached 93%, on the practicality aspect reached 90%. In the large …

Zero Trust - The Future Of Cybersecurity, Danial Haider, Shougfta Mushtaq, Hasnat Ali, Mazliham Mohd Su’Ud

Journal of Informatics and Web Engineering

The recent Zero-Trust Architecture (ZTA) is progressively adopted to the develop network security by assuming no implicit trust within or outside an organization’s boundary. Though, ZTA faces substantial challenges in detecting sophisticated and developing cyber threats, particularly due to its trust on traditional security mechanisms that struggle to manage internal threats and sophisticated attack techniques. To report these shortcomings, the proposed study discovers the combination of advanced machine learning (ML) and deep learning (DL) performances to improve the anomaly detection proficiencies within ZTA environments. The study develops the CICIDS2017 dataset, which contains diverse and realistic network traffic patterns, to assess …

Deep Learning Approaches To Autocorrelation Function And Signal-To-Noise Ratio Estimation In Noisy Images, Kai Liang Lew, Kok Swee Sim, Shing Chiang Tan

Journal of Informatics and Web Engineering

Accurate estimation of signal-to-noise ratio (SNR) in Scanning Electron Microscopy (SEM) is crucial because it evaluates the image quality. SEM images faced a challenge whereby Gaussian noise commonly appears in the images. Thus, researchers have developed several methods to estimate the SNR value. With the introduction of deep learning, most of the limitations in the classical methods can be addressed. This paper proposes a novel deep learning, CNN-based Calibration Map Network (CalibNet) to estimate the SNR value from SEM images using a calibration map between classical SNR and autocorrelation function SNR. The architecture consists of convolutional layers, rectified linear unit …

Skin Cancer Image Classification Using Deep Learning With Data Segmentation Technique, Akhilesh Kumar Shrivas, Hema Vastrakar

Karbala International Journal of Modern Science

The human skin is an impressive organ and structural element often impacted by a diverse range of recognized and unknown diseases. Diagnosing disorders that affect the outermost layer of the body is the most uncertain and difficult component in the scientific field. Dermatological diseases are one of the most significant health concerns in the 21st century since their identification is challenging and costly, plagued with challenges and the subjectivity that comes with human interpretation. The main objective of this piece of research work is to develop a robust model for the classification of skin cancer diseases using deep convolution neural …

Bifusenet: A Multimodal Network For Estimating Blood Alcohol Concentration Via Bidirectional Hierarchical Fusion, Abdullah Tariq, Arooba Maqsood, Martin Masek, Syed Zulqarnain Gilani

Research outputs 2022 to 2026

Drunk driving remains a significant public safety challenge, demanding innovative alternatives to conventional methods such as field sobriety tests and breathalysers. Estimating a driver's level of intoxication through facial cues is particularly challenging due to the subtle and person-specific nature of alcohol-induced behaviours. In this paper, we present BiFuseNet, a 3D spatio-temporal multi-modal network designed to classify alcohol impairment levels into three categories: sober, moderate, and severe. Unlike prior approaches that rely on either uni-modal RGB video or hand-crafted facial features, our method exploits complementary physiological cues from RGB and infrared (IR) facial videos. We introduce a Bi-directional Hierarchical Fusion …

Advancing Modified Barium Swallow Pre-Sorting With Deep Learning: A New Paradigm For The First Step Analysis In X-Ray Swallowing Study, Shitong Mao, Mohamed A Naser, Sheila Buoy, Kristy K Brock, Katherine A Hutcheson

Faculty, Staff and Student Publications

Purpose: Modified barium swallow (MBS) exams are pivotal for assessing swallowing function and include diagnostic video segments imaged in various planes, such as anteroposterior (AP or coronal plane) and lateral (or mid-sagittal plane), alongside non-diagnostic 'scout' image segments used for anatomic reference and image set-up that do not include bolus swallows. These variations in imaging files necessitate manual sorting and labeling, complicating the pre-analysis workflow.

Methods: Our study introduces a deep learning approach to automate the categorization of swallow videos in MBS exams, distinguishing between the different types of diagnostic videos and identifying non-diagnostic scout videos to streamline the MBS …

Detecting Polar Ring Galaxies Via Deep Learning, Fawad Kirmani, Anathavishnu S. Unnii, Varsha P. Kulkarni, Kyle Lackey, John R. Rose

Faculty Publications

Polar ring galaxies (PRGs) are peculiar galaxies that show a ring of stars, gas, and dust oriented roughly over the poles of the central ‘host’ galaxy (i.e. roughly orthogonal to the disc of the host galaxy). The formation models for these rings involve mergers or tidal interactions of the host galaxy with another galaxy. Although the identified PRGs look different from each other, they all have a ring that is not in the same plane as the disc of the host galaxy. Unlike in galaxies such as our Milky Way, where stars form in spiral arms, the rings exemplify an …

Topoimages: Incorporating Local Topology Encoding Into Deep Learning Models For Medical Image Classification, Pengfei Gu, Hongxiao Wang, Yejia Zhang, Huimin Li, Chaoli Wang, Danny Z. Chen

Computer Science Faculty Publications

Topological structures in image data, such as connected components and loops, play a crucial role in understanding image content (e.g., biomedical objects). Despite remarkable successes of numerous image processing methods that rely on appearance information, these methods often lack sensitivity to topological structures when used in general deep learning (DL) frameworks. In this paper, we introduce a new general approach, called TopoImages (for Topology Images), which computes a new representation of input images by encoding local topology of patches. In TopoImages, we leverage persistent homology (PH) to encode geometric and topological features inherent in image patches. Our main objective is …

Ai-Enabled Multi-Layer Security Operations: A Combined Siem, Ids, And Threat Intelligence Model For Adaptive Cyber Defense, Mohamad Khayat

Dissertations

This dissertation presents a comprehensive framework for the evolution of Security Operation Centers (SOCs) through the integration of advanced artificial intelligence (AI), blockchain, and optimization techniques. Motivated by the increasing complexity of cyber threats and the limitations of traditional reactive SOC strategies, this work begins with a systematic literature review that identifies critical gaps in current SOC operations. Based on these insights, a reference architecture is proposed to guide the integration of intelligent components into SOC environments. To address the challenge of secure and trustworthy information sharing, a blockchain-based threat intelligence platform is developed, leveraging Byzantine Fault Tolerance and Zero-Knowledge …