Digital Commons Network^™

Geospatial Wildfire Risk Prediction Using Deep Learning, Abner Alberto Benavides

Electronic Theses, Projects, and Dissertations

This report introduces a thorough analysis of wildfire prediction using satellite imagery by applying deep learning techniques. To find wildfire-prone geographical data, we use U-Net, a convolutional neural network known for its effectiveness in biomedical image segmentation. The input to the model is the Sentinel-2 multispectral images to supply a complete view of the terrain features.

We evaluated the wildfire risk prediction model’s performance using several metrics. The model showed high accuracy, with a weighted average F1 score of 0.91 and an AUC-ROC score of 0.972. These results suggest that the model is exceptionally good at predicting the location of …

Generalizable Deep-Learning-Based Wireless Indoor Localization, Ali Owfi

All Theses

The growing interest in indoor localization has been driven by its wide range of applications in areas such as smart homes, industrial automation, and healthcare. With the increasing reliance on wireless devices for location-based services, accurate estimation of device positions within indoor environments has become crucial. Deep learning approaches have shown promise in leveraging wireless parameters like Channel State Information (CSI) and Received Signal Strength Indicator (RSSI) to achieve precise localization. However, despite their success in achieving high accuracy, these deep learning models suffer from limited generalizability, making them unsuitable for deployment in new or dynamic environments without retraining. To …

Visual Complexity Of The Time-Frequency Image Pinpoints The Epileptogenic Zone: An Unsupervised Deep-Learning Tool To Analyze Interictal Intracranial Eeg, Sarvagya Gupta

Graduate Masters Theses

Epilepsy, a prevalent neurological disorder characterized by recurrent seizures, continues to pose significant challenges in diagnosis and treatment, particularly among children. Despite substantial advancements in medical technology and treatment modalities, localization of the part of brain that causes seizures (Epileptogenic Zone) remains a difficult task. Intracranial EEG (iEEG) is often used to estimate the epileptogenic zone (EZ) in children with drugresistant epilepsy (DRE) and target it during surgery. Conventionally, iEEG signals are inspected in the time domain by human experts aiming to locate epileptiform activity.

Visual scrutiny of the iEEG time-frequency (TF) images can be an alternative way to review …

The Impacts Of Transfer Learning For Ungulate Recognition At Sevilleta National Wildlife Refuge, Michael Gurule

Geography ETDs

As camera traps have grown in popularity, their utilization has expanded to numerous fields, including wildlife research, conservation, and ecological studies. The information gathered using this equipment gives researchers a precise and comprehensive understanding about the activities of animals in their natural environments. For this type of data to be useful, camera trap images must be labeled so that the species in the images can be classified and counted. This has typically been done by teams of researchers and volunteers, and it can be said that the process is at best time-consuming. With recent developments in deep learning, the process …

Invading The Integrity Of Deep Learning (Dl) Models Using Lsb Perturbation & Pixel Manipulation, Ashraful Tauhid

Theses and Dissertations

The use of deep learning (DL) models for solving classification and recognition-related problems are expanding at an exponential rate. However, these models are computationally expensive both in terms of time and resources. This imposes an entry barrier for low-profile businesses and scientific research projects with limited resources. Therefore, many organizations prefer to use fully outsourced trained models, cloud computing services, pre-trained models are available for download and transfer learning. This ubiquitous adoption of DL has unlocked numerous opportunities but has also brought forth potential threats to its prospects. Among the security threats, backdoor attacks and adversarial attacks have emerged as …

Generalizing Deep Learning Methods For Particle Tracing Using Transfer Learning, Shubham Gupta

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Particle tracing is a very important method for scientific visualization of vector fields, but it is computationally expensive. Deep learning can be used to speed up particle tracing, but existing deep learning models are domain-specific. In this work, we present a methodology to generalize the use of deep learning for particle tracing using transfer learning. We demonstrate the performance of our approach through a series of experimental studies that address the most common simulation design scenarios: varying time span, Reynolds number, and problem geometry. The results show that our methodology can be effectively used to generalize and accelerate the training …

Development And Validation Of An Automated Image-Based Deep Learning Platform For Sarcopenia Assessment In Head And Neck Cancer, Zezhong Ye, Anurag Saraf, Yashwanth Ravipati, Frank Hoebers, Paul J Catalano, Yining Zha, Anna Zapaishchykova, Jirapat Likitlersuang, Christian Guthier, Roy B Tishler, Jonathan D Schoenfeld, Danielle N Margalit, Robert I Haddad, Raymond H Mak, Mohamed Naser, Kareem A Wahid, Jaakko Sahlsten, Joel Jaskari, Kimmo Kaski, Antti A Mäkitie, Clifton D Fuller, Hugo J W L Aerts, Benjamin H Kann

Faculty, Staff and Student Publications

Importance: Sarcopenia is an established prognostic factor in patients with head and neck squamous cell carcinoma (HNSCC); the quantification of sarcopenia assessed by imaging is typically achieved through the skeletal muscle index (SMI), which can be derived from cervical skeletal muscle segmentation and cross-sectional area. However, manual muscle segmentation is labor intensive, prone to interobserver variability, and impractical for large-scale clinical use.

Objective: To develop and externally validate a fully automated image-based deep learning platform for cervical vertebral muscle segmentation and SMI calculation and evaluate associations with survival and treatment toxicity outcomes.

Design, setting, and participants: For this prognostic study, …

Deep Learning-Based Tem Image Analysis For Fully Automated Detection Of Gold Nanoparticles Internalized Within Tumor Cell, Amrit Kaphle, Sandun Jayarathna, Hem Moktan, Maureen Aliru, Subhiksha Raghuram, Sunil Krishnan, Sang Hyun Cho

Faculty, Staff and Student Publications

Transmission electron microscopy (TEM) imaging can be used for detection/localization of gold nanoparticles (GNPs) within tumor cells. However, quantitative analysis of GNP-containing cellular TEM images typically relies on conventional/thresholding-based methods, which are manual, time-consuming, and prone to human errors. In this study, therefore, deep learning (DL)-based methods were developed for fully automated detection of GNPs from cellular TEM images. Several models of "you only look once (YOLO)" v5 were implemented, with a few adjustments to enhance the model's performance by applying the transfer learning approach, adjusting the size of the input image, and choosing the best optimization algorithm. Seventy-eight original …

Non-Invasive Arterial Blood Pressure Measurement And Spo2 Estimation Using Ppg Signal: A Deep Learning Framework, Yan Chu, Kaichen Tang, Yu-Chun Hsu, Tongtong Huang, Dulin Wang, Wentao Li, Sean I Savitz, Xiaoqian Jiang, Shayan Shams

Faculty, Staff and Student Publications

BACKGROUND: Monitoring blood pressure and peripheral capillary oxygen saturation plays a crucial role in healthcare management for patients with chronic diseases, especially hypertension and vascular disease. However, current blood pressure measurement methods have intrinsic limitations; for instance, arterial blood pressure is measured by inserting a catheter in the artery causing discomfort and infection.

METHOD: Photoplethysmogram (PPG) signals can be collected via non-invasive devices, and therefore have stimulated researchers' interest in exploring blood pressure estimation using machine learning and PPG signals as a non-invasive alternative. In this paper, we propose a Transformer-based deep learning architecture that utilizes PPG signals to conduct …

Duplicate Bug Report Detection: How Far Are We?, Ting Zhang, Donggyun Han, Venkatesh Vinayakarao, Ivana Clairine Irsan, Bowen Xu, Thung Ferdian, David Lo, Lingxiao Jiang

Research Collection School Of Computing and Information Systems

Many Duplicate Bug Report Detection (DBRD) techniques have been proposed in the research literature. The industry uses some other techniques. Unfortunately, there is insufficient comparison among them, and it is unclear how far we have been. This work fills this gap by comparing the aforementioned techniques. To compare them, we first need a benchmark that can estimate how a tool would perform if applied in a realistic setting today. Thus, we first investigated potential biases that affect the fair comparison of the accuracy of DBRD techniques. Our experiments suggest that data age and issue tracking system choice cause a significant …

Using Deep Learning For Encrypted Traffic Analysis Of Amazon Echo, Surendra Pathak

Theses and Dissertations

The adoption of the Amazon Echo family of devices in modern homes has become very widespread at the current time, with hundreds of millions of devices sold. Moreover, the global smart speaker market size is growing vigorously and is projected to continue to bigger. Smart speakers allow users hands-free interaction by allowing voice control, promoting human-computer interaction to greater avenues. Though smart speaker can be useful assistant, it has some serious security concerns that need to be studied. In this study, an analysis of the security and privacy concerns of smart speakers is presented along with a passive attack, namely …

Generation Of Cardiac Chamber Models Using Interpretable Generative Neural Networks For Electrophysiology Studies, Sunil Mathew

Dissertations (1934 -)

An Electrophysiology study is conducted to diagnose and treat heart rhythm disorders, such as arrhythmias (abnormal heartbeat) like atrial fibrillation. A catheter is inserted into the chamber of interest to acquire 3D location and electrical information to create an electroanatomical map. This dissertation explores the design of a mapping system based on interpretable generative neural networks for generating patient specific cardiac models. Chapter 1 provides an introduction to electroanatomical mapping, the need for interpretability in neural networks and other relevant topics that are discussed in detail in the chapters that follow. Neural networks are often very large models with millions …

Extending The Convolution In Graph Neural Networks To Solve Materials Science And Node Classification Problems, Steph-Yves Mike Louis

Theses and Dissertations

The usage of graph to represent one's data in machine learning has grown in popularity in both academia and the industry due to its inherent benefits. With its flexible nature and immediate translation to real life observed objects, graph representation had a considerable contribution in advancing the state-of-the-art performance of machine learning in materials.

In this dissertation proposal, we discuss how machines can learn from graph encoded data and provide excellent results through graph neural networks (GNN). Notably, we focus our adaptation of graph neural networks on three tasks: predicting crystal materials properties, nullifying the negative impact of inferior graph …

Predicting Material Structures And Properties Using Deep Learning And Machine Learning Algorithms, Yuqi Song

Theses and Dissertations

Discovering new materials and understanding their crystal structures and chemical properties are critical tasks in the material sciences. Although computational methodologies such as Density Functional Theory (DFT), provide a convenient means for calculating certain properties of materials or predicting crystal structures when combined with search algorithms, DFT is computationally too demanding for structure prediction and property calculation for most material families, especially for those materials with a large number of atoms. This dissertation aims to address this limitation by developing novel deep learning and machine learning algorithms for effective prediction of material crystal structures and properties. Our data-driven machine learning …

Spatial And Temporal Agnostic Deep-Learning Based Radio Fingerprinting, Fahmida Afrin

School of Computing: Dissertations, Theses, and Student Research

Radio fingerprinting is a technique that validates wireless devices based on their unique radio frequency (RF) signals. This method is highly feasible because RF signals carry distinct hardware variations introduced during manufacturing. The security and trustworthiness of current and future wireless networks heavily rely on radio fingerprinting. In addition to identifying individual devices, it can also differentiate mission-critical targets. Despite significant efforts in the literature, existing radio fingerprinting methods require improved robustness, scalability, and resilience. This study focuses on the challenges of spatial-temporal variations in the wireless environment. Many prior approaches overlook the complex numerical structure of the in-phase and …

Predicting Benefit From Immune Checkpoint Inhibitors In Patients With Non-Small-Cell Lung Cancer By Ct-Based Ensemble Deep Learning: A Retrospective Study, Maliazurina B Saad, Lingzhi Hong, Muhammad Aminu, Natalie I Vokes, Pingjun Chen, Morteza Salehjahromi, Kang Qin, Sheeba J Sujit, Xuetao Lu, Elliana Young, Qasem Al-Tashi, Rizwan Qureshi, Carol C Wu, Brett W Carter, Steven H Lin, Percy P Lee, Saumil Gandhi, Joe Y Chang, Ruijiang Li, Michael F Gensheimer, Heather A Wakelee, Joel W Neal, Hyun-Sung Lee, Chao Cheng, Vamsidhar Velcheti, Yanyan Lou, Milena Petranovic, Waree Rinsurongkawong, Xiuning Le, Vadeerat Rinsurongkawong, Amy Spelman, Yasir Y Elamin, Marcelo V Negrao, Ferdinandos Skoulidis, Carl M Gay, Tina Cascone, Mara B Antonoff, Boris Sepesi, Jeff Lewis, Ignacio I Wistuba, John D Hazle, Caroline Chung, David Jaffray, Don L Gibbons, Ara Vaporciyan, J Jack Lee, John V Heymach, Jianjun Zhang, Jia Wu

Faculty, Staff and Student Publications

BACKGROUND: Only around 20-30% of patients with non-small-cell lung cancer (NCSLC) have durable benefit from immune-checkpoint inhibitors. Although tissue-based biomarkers (eg, PD-L1) are limited by suboptimal performance, tissue availability, and tumour heterogeneity, radiographic images might holistically capture the underlying cancer biology. We aimed to investigate the application of deep learning on chest CT scans to derive an imaging signature of response to immune checkpoint inhibitors and evaluate its added value in the clinical context.

METHODS: In this retrospective modelling study, 976 patients with metastatic, EGFR/ALK negative NSCLC treated with immune checkpoint inhibitors at MD Anderson and Stanford were enrolled from …

Covid-19 Detection On Chest X-Ray Images By Combining Histogram-Oriented Gradient And Convolutional Neural Network Features, Reda Elbarougy, Esmail Aboghrara, G. M. Behery, Y. M. Younes, Noha M. El-Badry

Information Sciences Letters

The COVID-19 coronavirus epidemic has spread rapidly worldwide after a person became infected with a severe health problem. The World Health Organization has declared the coronavirus a global threat (WHO). Early detection of COVID 19, particularly in cases with no apparent symptoms, may reduce the patients mortality rate. COVID 19 detection using machine learning techniques will aid healthcare systems around the world in recovering patients more rapidly. This disease is diagnosed using x-ray images of the chest; therefore, this study proposed a machine vision method for detecting COVID-19 in x-ray images of the chest. The histogram-oriented gradient (HOG) and convolutional …

A Novel Approach To Extending Music Using Latent Diffusion, Keon Roohparvar, Franz J. Kurfess

Master's Theses

Using deep learning to synthetically generate music is a research domain that has gained more attention from the public in the past few years. A subproblem of music generation is music extension, or the task of taking existing music and extending it. This work proposes the Continuer Pipeline, a novel technique that uses deep learning to take music and extend it in 5 second increments. It does this by treating the musical generation process as an image generation problem; we utilize latent diffusion models (LDMs) to generate spectrograms, which are image representations of music. The Continuer Pipeline is able to …

Deep Learning Recommendations For The Acl2 Interactive Theorem Prover, Robert K. Thompson, Robert K. Thompson

Master's Theses

Due to the difficulty of obtaining formal proofs, there is increasing interest in partially or completely automating proof search in interactive theorem provers. Despite being a theorem prover with an active community and plentiful corpus of 170,000+ theorems, no deep learning system currently exists to help automate theorem proving in ACL2. We have developed a machine learning system that generates recommendations to automatically complete proofs. We show that our system benefits from the copy mechanism introduced in the context of program repair. We make our system directly accessible from within ACL2 and use this interface to evaluate our system in …

Boosting Adversarial Training Using Robust Selective Data Augmentation, Bader Rasheed, Asad Masood Khattak, Adil Khan, Stanislav Protasov, Muhammad Ahmad

All Works

Artificial neural networks are currently applied in a wide variety of fields, and they are near to achieving performance similar to humans in many tasks. Nevertheless, they are vulnerable to adversarial attacks in the form of a small intentionally designed perturbation, which could lead to misclassifications, making these models unusable, especially in applications where security is critical. The best defense against these attacks, so far, is adversarial training (AT), which improves the model’s robustness by augmenting the training data with adversarial examples. In this work, we show that the performance of AT can be further improved by employing the neighborhood …

Detecting Ai Generated Text Using Neural Networks, Jesus Guerrero

Masters Theses (Archived)

For humans, distinguishing machine generated text from human written text is men- tally taxing and slow. NLP models have been created to do this more effectively and faster. But, what if some adversarial changes have been added to the machine generated text? This thesis discusses this issue and text detectors in general.
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/="/">The primary goal of this thesis is to describe the current state of text detectors in research and to discuss a key adversarial issue in modern NLP transformers. To describe the current state of text detectors a Systematic Literature Review was done on 50 relevant papers …

A Novel Graph Neural Network-Based Framework For Automatic Modulation Classification In Mobile Environments, Pejman Ghasemzadeh

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Automatic modulation classification (AMC) refers to a signal processing procedure through which the modulation type and order of an observed signal are identified without any prior information about the communications setup. AMC has been recognized as one of the essential measures in various communications research fields such as intelligent modem design, spectrum sensing and management, and threat detection. The research literature in AMC is limited to accounting only for the noise that affects the received signal, which makes their models applicable for stationary environments. However, a more practical and real-world application of AMC can be found in mobile environments where …

Single-Frame Deep-Learning Super-Resolution Microscopy For Intracellular Dynamics Imaging, Rong Chen, Xiao Tang, Yuxuan Zhao, Zeyu Shen, Meng Zhang, Yusheng Shen, Tiantian Li, Casper Ho Yin Chung, Lijuan Zhang, Ji Wang, Binbin Cui, Peng Fei, Yusong Guo, Shengwang Du, Shuhuai Yao

Faculty, Staff and Student Publications

Single-molecule localization microscopy (SMLM) can be used to resolve subcellular structures and achieve a tenfold improvement in spatial resolution compared to that obtained by conventional fluorescence microscopy. However, the separation of single-molecule fluorescence events that requires thousands of frames dramatically increases the image acquisition time and phototoxicity, impeding the observation of instantaneous intracellular dynamics. Here we develop a deep-learning based single-frame super-resolution microscopy (SFSRM) method which utilizes a subpixel edge map and a multicomponent optimization strategy to guide the neural network to reconstruct a super-resolution image from a single frame of a diffraction-limited image. Under a tolerable signal density and …

A Quality Assurance Pipeline For Deep Learning Segmentation Models For Radiotherapy Applications, Xiyao Jin

McKelvey School of Engineering Graduate Student Theses & Dissertations

The applications of deep learning (DL) in medical imaging have been extensively developed and investigated to tackle a wide variety of problems, with many of them able to achieve state-of-the-art performances in different tasks. In the field of radiation therapy (RT), the workflow is a complex process consisting of multiple time and effort-consuming steps such as organ-at-risk (OAR) contouring that could impact treatment quality and patient outcomes. Due to the rapid growth in patient data and the advanced DL techniques, increased attention has been paid to the clinical application of machine learning (ML) and DL1,2 and commercial software has been …

Techniques For Tree Species Classification With Hyperspectral Imagery At Neon Science Sites, Anthony T. Albanese

Theses and Dissertations

Studies three sets of techniques for hyperspectral tree species classification at NEON science sites, aiming to work towards producing a general classification model.

Enhancing Health Tweet Classification: An Evaluation Of Transformer-Based Models For Comprehensive Analysis, Foram Pankajbhai Patel

Computer Science and Engineering Theses - Archive

The task of health tweet classification entails identifying whether a given tweet is health-related or not. While existing research in this area has made significant progress in classifying tweets into specific sub-domains of health, such as mental health, COVID-19, or specific diseases, there is a need for a more comprehensive approach that considers a broader range of health-related topics. This thesis addresses this need by proposing a diverse and comprehensive dataset that includes various existing health-related datasets, data collected through a keyword-based approach, and manually annotated data. However, the use of health-related keywords in a figurative or non-health context poses …

Locating Low Head Dams Using A Deep Learning Model In Arcgis Pro With Aerial Imagery, Caitlin R. Arnold

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Low Head Dams are man-made structures that span the width of a river and allow water to flow over them. Although these structures vary in age and original purpose, some pose a life-threatening danger when recreationalists are entrapped in the reverse current at the toe. Despite these dangerous structures causing many drowning deaths in the USA each year, most low head dams do not have safety regulations and remain unknown to those charged with dam and public safety. Thus, to improve public safety at these structures, the first step is to fully inventory low head dams, so that subsequent efforts …

Adversarial Deep Learning And Security With A Hardware Perspective, Joseph Clements

All Dissertations

Adversarial deep learning is the field of study which analyzes deep learning in the presence of adversarial entities. This entails understanding the capabilities, objectives, and attack scenarios available to the adversary to develop defensive mechanisms and avenues of robustness available to the benign parties. Understanding this facet of deep learning helps us improve the safety of the deep learning systems against external threats from adversaries. However, of equal importance, this perspective also helps the industry understand and respond to critical failures in the technology. The expectation of future success has driven significant interest in developing this technology broadly. Adversarial deep …

Non-Rigid Registration With Deep Learning And Conformal Harmonic Maps, Daniel Billmann

Electronic Dissertations and Theses, 2010-current

We present a novel fully-automated approach to non-rigid registration for high-resolution facial scans using conformal harmonic maps. The novelty of this paper is its use of applied deep learning models to prepare data for geometric algorithms to compute non-rigid registration. We use facial detection to both constrain the boundary of the face and provide a mechanism to manipulate the input mesh. We use conformal harmonic maps[7] to map a dense 3D point cloud to the closed unit disc D1(0) and optimize the weights of each edge. Our experiments show the effectiveness of this approach.

Digital Twin Modeling And Optimal Control Of Soft-Bodied Robotics Using Reservoir Computing, Jovan Cain

All Theses

Soft-bodied robots have become increasingly popular due to their ability to per- form tasks that are difficult or impossible for traditional rigid robots. However, accurately modeling and controlling the movement and behavior of soft robots are very challenging due to their complex and dynamic nature. In recent years, Reservoir Computing has emerged as a promising approach to modeling and controlling soft robots. In this thesis, reservoir computing was used to create a digital twin of soft-bodied robots. Specifically, a digital twin of a spring-mass system was created using echo state network, a popular reservoir computing model. Furthermore, an optimal controller …